Tag Content
SG ID
SG00000039 
UniProt Accession
Theoretical PI
5.2  
Molecular Weight
89785 Da  
Genbank Nucleotide ID
Genbank Protein ID
Gene Name
cdc-48.1 
Gene Synonyms/Alias
ORFNames=C06A1.1 
Protein Name
Transitional endoplasmic reticulum ATPase homolog 1 
Protein Synonyms/Alias
Cell division cycle-related protein 48.1; p97/CDC48 homolog 1; 
Organism
Caenorhabditis elegans 
NCBI Taxonomy ID
6239 
Chromosome Location
chr:II;10559958-10563349;-1
View in Ensembl genome browser  
Function in Stage
Function in Cell Type
Description
Temporarily unavailable 
The information of related literatures
1. Y. Sasagawa, K. Yamanaka, Y. Saito-Sasagawa and T. Ogura (2010) Caenorhabditis elegans UBX cofactors for CDC-48/p97 control spermatogenesis. Genes Cells 15(12): 1201-15. 

Abstract
UBX (ubiquitin regulatory X) domain-containing proteins act as cofactors for CDC-48/p97. CDC-48/p97 is essential for various cellular processes including retro-translocation in endoplasmic reticulum-associated degradation, homotypic membrane fusion, nuclear envelope assembly, degradation of ubiquitylated proteins, and cell cycle progression. CDC-48/p97-dependent processes are determined by differential binding of cofactors including UBX proteins, but the cellular functions of UBX proteins have not yet been elucidated, especially in multicellular organisms. Therefore, we investigated the functions of UBX family members using Caenorhabditis elegans, which expresses six UBX proteins, UBXN-1 to UBXN-6. All six UBXN proteins directly interacted with CDC-48.1 and CDC-48.2, and simultaneous knockdown of the expression of three genes, ubxn-1, ubxn-2 and ubxn-3, induced embryonic lethal and sterile phenotypes, but knockdown of either one or two did not. The sterile worms had a feminized germ-line phenotype, producing oocytes but no sperm. UBXN-1, UBXN-2 and UBXN-3 colocalized with CDC-48 in spermatocytes but not mature sperm. TRA-1A, which is a key factor in the sex determination pathway and inhibits spermatogenesis, accumulated in worms in which UBXN-1, UBXN-2 and UBXN-3 had been simultaneously knocked down. Taken together, these results suggest that UBXN-1, UBXN-2 and UBXN-3 are redundant cofactors for CDC-48/p97 and control spermatogenesis via the degradation of TRA-1A. PMID: [20977550] 

2. Y. Sasagawa, M. Otani, N. Higashitani, A. Higashitani, K. Sato, T. Ogura and K. Yamanaka (2009) Caenorhabditis elegans p97 controls germline-specific sex determination by controlling the TRA-1 level in a CUL-2-dependent manner. J Cell Sci 122(Pt 20): 3663-72. 

Abstract
p97 (CDC-48 in Caenorhabditis elegans) is a ubiquitin-selective AAA (ATPases associated with diverse cellular activities) chaperone and its key function is to disassemble protein complexes. p97 functions in diverse cellular processes including endoplasmic reticulum (ER)-associated degradation, membrane fusion, and meiotic and mitotic progression. However, its cellular functions in development have not yet been clarified. Here, we present data that p97 is involved in the switch from spermatogenesis to oogenesis in the germline of the C. elegans hermaphrodite. We found that the cdc-48.1 deletion mutant produced less sperm than the wild type and thus showed a decreased brood size. The cdc-48.1 mutation suppressed the sperm-overproducing phenotypes of fbf-1 and fem-3(gf) mutants. In addition, the p97/CDC-48-UFD-1-NPL-4 complex interacted with the E3 ubiquitin ligase CUL-2 complex via NPL-4 binding to Elongin C. Furthermore, TRA-1A, which is the terminal effector of the sex determination pathway and is regulated by CUL-2-mediated proteolysis, accumulated in the cdc-48.1 mutant. Proteasome activity was also required for the brood size determination and sperm-oocyte switch. Our results demonstrate that the C. elegans p97/CDC-48-UFD-1-NPL-4 complex controls the sperm-oocyte switch by regulating CUL-2-mediated TRA-1A proteasome degradation. PMID: [19773360] 

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Figures for illustrating the function of this protein/gene
Function
 
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Subcellular Location
 
Tissue Specificity
 
Gene Ontology
GO IDGO termEvidence
GO:0034098 C:Cdc48p-Npl4p-Ufd1p AAA ATPase complex IPI:WormBase.
GO:0005634 C:nucleus IDA:WormBase.
GO:0005524 F:ATP binding IEA:UniProtKB-KW.
GO:0016887 F:ATPase activity IDA:WormBase.
GO:0040002 P:collagen and cuticulin-based cuticle development IMP:WormBase.
GO:0000910 P:cytokinesis IMP:WormBase.
GO:0009792 P:embryo development ending in birth or egg hatching IMP:WormBase.
GO:0071712 P:ER-associated misfolded protein catabolic process IGI:WormBase.
GO:0040011 P:locomotion IMP:WormBase.
GO:0002119 P:nematode larval development IMP:WormBase.
GO:0040018 P:positive regulation of multicellular organism growth IMP:WormBase.
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Interpro
IPR003593;    AAA+_ATPase.
IPR009010;    Asp_de-COase-like_fold.
IPR005938;    ATPase_AAA_CDC48.
IPR003959;    ATPase_AAA_core.
IPR003960;    ATPase_AAA_CS.
IPR004201;    Cdc48_dom2.
IPR003338;    CDC4_N-term_subdom.
IPR015415;    Vps4_C.
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Pfam
PF00004;    AAA;    2.
PF02933;    CDC48_2;    1.
PF02359;    CDC48_N;    1.
PF09336;    Vps4_C;    1.
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SMART
SM00382;    AAA;    2.
SM01072;    CDC48_2;    1.
SM01073;    CDC48_N;    1.
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PROSITE
PS00674;    AAA;    2.
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PRINTS
Created Date
18-Oct-2012 
Record Type
Experiment identified 
Protein sequence Annotation
CHAIN         1    809       Transitional endoplasmic reticulum ATPase
                             homolog 1.
                             /FTId=PRO_0000084577.
NP_BIND     253    259       ATP (By similarity).
BINDING     354    354       ATP (By similarity).
BINDING     390    390       ATP (By similarity).
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Nucleotide Sequence
Length: 20752 bp   Go to nucleotide: FASTA
Protein Sequence
Length: 809 bp   Go to amino acid: FASTA
The verified Protein-Protein interaction information
UniProt
Gene Symbol Ref Databases
ima-1IntAct 
B0024.10IntAct 
T19B10.6IntAct 
ubxn-1BioGRID 
mrt-2BioGRID 
atx-3IntAct 
ima-1MINT 
plp-1IntAct 
ubxn-1IntAct 
mrt-2IntAct 
cdc-48.1IntAct 
cdc-48.1IntAct 
cdc-48.2IntAct 
cdc-48.2IntAct 
Other Protein-Protein interaction resources
String database  
View Microarray data
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