Tag Content
SG ID
SG00000100 
UniProt Accession
Theoretical PI
5.69  
Molecular Weight
74193 Da  
Genbank Nucleotide ID
Genbank Protein ID
Gene Name
 
Gene Synonyms/Alias
 
Protein Name
 
Protein Synonyms/Alias
SubName: Vasa 
Organism
catfish) 
NCBI Taxonomy ID
13013 
Chromosome Location
chr:-;---;-
View in Ensembl genome browser  
Function in Stage
Function in Cell Type
Description
Temporarily unavailable 
The information of related literatures
1. K. Raghuveer and B. Senthilkumaran (2010) Cloning and differential expression pattern of vasa in the developing and recrudescing gonads of catfish, Clarias gariepinus. Comp Biochem Physiol A Mol Integr Physiol 157(1): 79-85. 

Abstract
Vasa gene codes for a DEAD box family protein, which plays a crucial role in primordial germ cell proliferation. In this study, we report cloning of vasa from gonads of air-breathing catfish, Clarias gariepinus, a seasonally reproducing teleost fish. We studied the expression pattern of vasa during gametogenesis using real-time PCR. We also examined the hormonal regulation on vasa in gonads of catfish. RT-PCR analysis revealed that vasa was detectable only in the gonads. Further, real-time PCR results showed that expression of vasa was seen throughout the development from embryonic stage to adult. However, the expression was more in ovary than in testis during gonadal development. In adult testis, the vasa transcripts were significantly high during spermatogenesis and it declined during spermiation. On the other hand, during ovarian recrudescence, vasa transcripts were high in immature oocytes (stages I and II oocytes) when compared to mature oocytes (stages III and IV oocytes). Human chorionic gonadotropin treatment in recrudescing ovary (in vivo) as well as in testicular slices (in vitro) resulted in up regulation of vasa mRNA in a time-dependent manner. These results together suggest that vasa gene has got an important role to play in spermatogenesis and oogenesis during recrudescence in addition to development. PMID: [20462517] 

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Figures for illustrating the function of this protein/gene
Function
 
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Subcellular Location
 
Tissue Specificity
 
Gene Ontology
GO IDGO termEvidence
GO:0005524 F:ATP binding IEA:UniProtKB-KW.
GO:0008026 F:ATP-dependent helicase activity IEA:InterPro.
GO:0003676 F:nucleic acid binding IEA:InterPro.
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Interpro
IPR011545;    DNA/RNA_helicase_DEAD/DEAH_N.
IPR014001;    Helicase_ATP-bd.
IPR001650;    Helicase_C.
IPR000629;    RNA-helicase_DEAD-box_CS.
IPR014014;    RNA_helicase_DEAD_Q_motif.
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Pfam
PF00270;    DEAD;    1.
PF00271;    Helicase_C;    1.
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SMART
SM00487;    DEXDc;    1.
SM00490;    HELICc;    1.
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PROSITE
PS00039;    DEAD_ATP_HELICASE;    1.
PS51192;    HELICASE_ATP_BIND_1;    1.
PS51194;    HELICASE_CTER;    1.
PS51195;    Q_MOTIF;    1.
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PRINTS
Created Date
18-Oct-2012 
Record Type
Experiment identified 
Protein sequence Annotation
Nucleotide Sequence
Length: bp   Go to nucleotide: FASTA
Protein Sequence
Length: 681 bp   Go to amino acid: FASTA
The verified Protein-Protein interaction information
UniProt
Gene Symbol Ref Databases
Other Protein-Protein interaction resources
String database  
View Microarray data
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