Tag Content
SG ID
SG00000403 
UniProt Accession
Theoretical PI
10.95  
Molecular Weight
38518 Da  
Genbank Nucleotide ID
Genbank Protein ID
Gene Name
YBX2 
Gene Synonyms/Alias
CSDA3, MSY2 
Protein Name
Y-box-binding protein 2 
Protein Synonyms/Alias
Contrin; DNA-binding protein C;Dbpc Germ cell-specific Y-box-binding protein; MSY2 homolog; 
Organism
Homo sapiens (Human) 
NCBI Taxonomy ID
9606 
Chromosome Location
chr:17;7191571-7197876;-1
View in Ensembl genome browser  
Function in Stage
Function in Cell Type
Description
MSY2 has been identified as a central component in the regulation of spermatogenesis in mice, but the potential role of its human orthologue, YBX2 or "Contrin," in human infertility is not known 
The information of related literatures
1. Y. Deng, W. Zhang, D. Su, Y. Yang, Y. Ma, H. Zhang and S. Zhang (2008) Some single nucleotide polymorphisms of MSY2 gene might contribute to susceptibility to spermatogenic impairment in idiopathic infertile men. Urology 71(5): 878-82. 

Abstract
OBJECTIVES PMID: [18372033] 

2. S. Hammoud, B. R. Emery, D. Dunn, R. B. Weiss and D. T. Carrell (2009) Sequence alterations in the YBX2 gene are associated with male factor infertility. Fertil Steril 91(4): 1090-5. 

Abstract
OBJECTIVE PMID: [18339382] 

3. S. Tekur, A. Pawlak, G. Guellaen and N. B. Hecht (1999) Contrin, the human homologue of a germ-cell Y-box-binding protein. J Androl 20(1): 135-44. 

Abstract
Inactivation of germ-cell-specific molecules essential for the production of functional spermatozoa could lead to attractive new means for male contraception. The mouse protein MSY2 is the mammalian homologue of a class of Xenopus DNA/RNA-binding proteins needed for the transcription of testis-specific genes and for translational repression (masking) of paternal mRNAs. In this report, we describe the human homologue for MSY2, Contrin. Sequence analysis of Contrin cDNAs predicts a protein highly similar to its mouse and Xenopus germ-cell Y-box protein homologues with a cold shock domain and four basic/aromatic islands. Contrin is highly basic and is rich in the amino acids arginine and proline. It contains seven putative casein kinase 2 phosphorylation sites and three putative protein kinase C phosphorylation sites, suggesting that Contrin could be highly phosphorylated in vivo. The predicted protein sequence contains two nuclear localization signals, consistent with its predicted role of shuttling between nucleus and cytoplasm. Contrin maps to human chromosome 17p11.2-13.1. By the criteria of northern and western blotting, Contrin appears to be testis specific and distinct from other mammalian Y-box-binding proteins. We predict that inactivation of Contrin function in mammalian germ cells would prevent the formation of functional male gametes. PMID: [10100484] 

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Figures for illustrating the function of this protein/gene
Function
Major constituent of messenger ribonucleoproteinparticles (mRNPs). Involved in the regulation of the stabilityand/or translation of germ cell mRNAs. Binds to Y-box consensuspromoter element. Binds to full length mRNA with high affinity ina sequence-independent manner. Binds to short RNA sequencescontaining the consensus site 5'-UCCAUCA-3' with low affinity andlimited sequence specificity. Its binding with maternal mRNAs isnecessary for its cytoplasmic retention. May mark specific mRNAs(those transcribed from Y-box promoters) in the nucleus forcytoplasmic storage, thereby linking transcription and mRNAstorage/translational delay (By similarity). 
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Subcellular Location
Cytoplasm. Nucleus. 
Tissue Specificity
Expressed in oocytes and testicular germ cellsin the stage of spermatogonia to spermatocyte. Also observedplacental trophoblasts, as well as in vascular smooth muscle cellsin the pulmonary artery, myocardium, and skeletal muscle.Undetectable in epithelial cells in respiratory, gastrointestinal,and urogenital tracts. Up-regulated in various carcinomas and germcell tumors (at protein level). 
Gene Ontology
GO IDGO termEvidence
GO:0005737 C:cytoplasm TAS:ProtInc.
GO:0005634 C:nucleus TAS:ProtInc.
GO:0005844 C:polysome IEA:Compara.
GO:0003682 F:chromatin binding IEA:Compara.
GO:0003677 F:DNA binding IEA:UniProtKB-KW.
GO:0008289 F:lipid binding IEA:Compara.
GO:0003730 F:mRNA 3'-UTR binding IEA:Compara.
GO:0043021 F:ribonucleoprotein complex binding IEA:Compara.
GO:0045182 F:translation regulator activity IEA:Compara.
GO:0048255 P:mRNA stabilization IEA:Compara.
GO:0051100 P:negative regulation of binding IEA:Compara.
GO:0017148 P:negative regulation of translation IEA:Compara.
GO:0048599 P:oocyte development IEA:Compara.
GO:0006355 P:regulation of transcription, DNA-dependent IEA:InterPro.
GO:0007286 P:spermatid development IEA:Compara.
GO:0007283 P:spermatogenesis TAS:ProtInc.
GO:0006366 P:transcription from RNA polymerase II promoter TAS:ProtInc.
GO:0009386 P:translational attenuation TAS:ProtInc.
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Interpro
IPR019844;    Cold-shock_CS.
IPR011129;    Cold_shock_prot.
IPR002059;    CSP_DNA-bd.
IPR012340;    NA-bd_OB-fold.
IPR016027;    NA-bd_OB-fold-like.
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Pfam
PF00313;    CSD;    1.
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SMART
SM00357;    CSP;    1.
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PROSITE
PS00352;    COLD_SHOCK;    1.
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PRINTS
PR00050;    COLDSHOCK.;   
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Created Date
18-Oct-2012 
Record Type
Experiment identified 
Protein sequence Annotation
CHAIN         1    364       Y-box-binding protein 2.
                             /FTId=PRO_0000100225.
DOMAIN       93    163       CSD.
REGION       87    169       Required for cytoplasmic retention (By
                             similarity).
REGION      217    364       Required for mRNA-binding.
COMPBIAS     35     67       Gly-rich.
COMPBIAS    185    352       Pro-rich.
MOD_RES     116    116       N6-acetyllysine.
VARIANT       9      9       G -> V (in dbSNP:rs222859).
                             /FTId=VAR_027916.
VARIANT      63     63       S -> P (in dbSNP:rs8069533).
                             /FTId=VAR_027917.
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Nucleotide Sequence
Length: 1587 bp   Go to nucleotide: FASTA
Protein Sequence
Length: 364 bp   Go to amino acid: FASTA
The verified Protein-Protein interaction information
UniProt
Gene Symbol Ref Databases
Other Protein-Protein interaction resources
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