Tag Content
SG ID
SG00000589 
UniProt Accession
Theoretical PI
7.57  
Molecular Weight
33304 Da  
Genbank Nucleotide ID
Genbank Protein ID
Gene Name
CDK5 
Gene Synonyms/Alias
CDKN5 
Protein Name
Cyclin-dependent kinase 5 
Protein Synonyms/Alias
EC=2.7.11.22 Cell division protein kinase 5; Serine/threonine-protein kinase PSSALRE; Tau protein kinase II catalytic subunit;TPKII catalytic subunit 
Organism
Homo sapiens (Human) 
NCBI Taxonomy ID
9606 
Chromosome Location
chr:7;150750899-150755617;-1
View in Ensembl genome browser  
Function in Stage
Function in Cell Type
Description
The cyclin-dependent kinases are known regulators of the cell cycle; however, Cdk5 expression previously has been described in terminally differentiated cells of the brain. The present evidence of an association between Cdk5 and microfilaments of Sertoli cells and meiotic metaphase germ cells suggests a role of Cdk5 in both seminiferous tubule function and meiosis. 
The information of related literatures
1. D. R. Session, M. P. Fautsch, R. Avula, W. R. Jones, A. Nehra and E. D. Wieben (2001) Cyclin-dependent kinase 5 is expressed in both Sertoli cells and metaphase spermatocytes. Fertil Steril 75(4): 669-73. 

Abstract
OBJECTIVE PMID: [11287016] 

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Figures for illustrating the function of this protein/gene
Function
Proline-directed serine/threonine-protein kinaseessential for neuronal cell cycle arrest and differentiation andmay be involved in apoptotic cell death in neuronal diseases bytriggering abortive cell cycle re-entry. Interacts with D1 and D3-type G1 cyclins. Phosphorylates SRC, NOS3, VIM/vimentin,p35/CDK5R1, MEF2A, SIPA1L1, SH3GLB1, PXN, PAK1, MCAM/MUC18, SEPT5,SYN1, DNM1, AMPH, SYNJ1, CDK16, RAC1, RHOA, CDC42, TONEBP/NFAT5,MAPT/TAU, MAP1B, histone H1, p53/TP53, HDAC1, APEX1, PTK2/FAK1,huntingtin/HTT, ATM, MAP2, NEFH and NEFM. Regulates severalneuronal development and physiological processes includingneuronal survival, migration and differentiation, axonal andneurite growth, synaptogenesis, oligodendrocytes differentiation,synaptic plasticity and neurotransmission, by phosphorylating keyproteins. Activated by interaction with CDK5R1 (p35) and ATP6V0D1(p39), especially in post-mitotic neurons, and promotes CDK5R1(p35) expression in an autostimulation loop. Phosphorylates manydownstream substrates such as Rho and Ras family small GTPases(e.g. PAK1, RAC1, RHOA, CDC42) or microtubule-binding proteins(e.g. MAPT/TAU, MAP2, MAP1B), and modulates actin dynamics toregulate neurite growth and/or spine morphogenesis. Phosphorylatesalso exocytosis associated proteins such as MCAM/MUC18, SEPT5,SYN1, and PCTAIRE 1/CDK16 as well as endocytosis associatedproteins such as DNM1, AMPH and SYNJ1 at synaptic terminals. Inthe mature central nervous system (CNS), regulatesneurotransmitter movements by phosphorylating substratesassociated with neurotransmitter release and synapse plasticity;synaptic vesicle exocytosis, vesicles fusion with the presynapticmembrane, and endocytosis. Promotes cell survival by activatinganti-apoptotic proteins BCL2 and STAT3, and negatively regulatingof JNK3/MAPK10 activity. Phosphorylation of p53/TP53 in responseto genotoxic and oxidative stresses enhances its stabilization bypreventing ubiquitin ligase-mediated proteasomal degradation, andinduces transactivation of p53/TP53 target genes, thus regulatingapoptosis. Phosphorylation of p35/CDK5R1 enhances itsstabilization by preventing calpain-mediated proteolysis producingp25/CDK5R1 and avoiding ubiquitin ligase-mediated proteasomaldegradation. During aberrant cell-cycle activity and DNA damage,p25/CDK5 activity elicites cell-cycle activity and double-strandDNA breaks that precedes neuronal death by deregulating HDAC1. DNAdamage triggered phosphorylation of huntingtin/HTT in nuclei ofneurons protects neurons against polyglutamine expansion as wellas DNA damage mediated toxicity. Phosphorylation of PXN reducesits interaction with PTK2/FAK1 in matrix-cell focal adhesions(MCFA) during oligodendrocytes (OLs) differentiation. Negativeregulator of Wnt/beta-catenin signaling pathway. Activator of theGAIT (IFN-gamma-activated inhibitor of translation) pathway, whichsuppresses expression of a post-transcriptional regulon ofproinflammatory genes in myeloid cells; phosphorylates the linkerdomain of glutamyl-prolyl tRNA synthetase (EPRS) in a IFN-gamma-dependent manner, the initial event in assembly of the GAITcomplex. Phosphorylation of SH3GLB1 is required for autophagyinduction in starved neurons. Phosphorylation of TONEBP/NFAT5 inresponse to osmotic stress mediates its rapid nuclearlocalization. MEF2 is inactivated by phosphorylation in nucleus inresponse to neurotoxin, thus leading to neuronal apoptosis. APEX1AP-endodeoxyribonuclease is repressed by phosphorylation,resulting in accumulation of DNA damage and contributing toneuronal death. NOS3 phosphorylation down regulates NOS3-derivednitrite (NO) levels. SRC phosphorylation mediates its ubiquitin-dependent degradation and thus leads to cytoskeletalreorganization. May regulate endothelial cell migration andangiogenesis via the modulation of lamellipodia formation.Involved in dendritic spine morphogenesis by mediating the EFNA1-EPHA4 signaling. 
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Subcellular Location
Isoform 2: Nucleus. 
Tissue Specificity
Isoform 1 is ubiquitously expressed.Accumulates in cortical neurons (at protein level). Isoform 2 hasonly been detected in testis, skeletal muscle, colon, bone marrowand ovary. 
Gene Ontology
GO IDGO termEvidence
GO:0030424 C:axon ISS:UniProtKB.
GO:0030054 C:cell junction IEA:UniProtKB-KW.
GO:0016533 C:cyclin-dependent protein kinase 5 holoenzyme complex IEA:Compara.
GO:0005829 C:cytosol TAS:Reactome.
GO:0030175 C:filopodium IEA:Compara.
GO:0030426 C:growth cone ISS:UniProtKB.
GO:0030027 C:lamellipodium IEA:UniProtKB-SubCell.
GO:0016020 C:membrane ISS:UniProtKB.
GO:0031594 C:neuromuscular junction ISS:UniProtKB.
GO:0043025 C:neuronal cell body ISS:UniProtKB.
GO:0005634 C:nucleus ISS:UniProtKB.
GO:0043204 C:perikaryon IEA:UniProtKB-SubCell.
GO:0005886 C:plasma membrane IEA:UniProtKB-SubCell.
GO:0014069 C:postsynaptic density ISS:UniProtKB.
GO:0045211 C:postsynaptic membrane IEA:UniProtKB-KW.
GO:0030549 F:acetylcholine receptor activator activity ISS:UniProtKB.
GO:0005524 F:ATP binding IEA:UniProtKB-KW.
GO:0004693 F:cyclin-dependent protein kinase activity ISS:UniProtKB.
GO:0050321 F:tau-protein kinase activity ISS:UniProtKB.
GO:0008633 P:activation of pro-apoptotic gene products IDA:UniProtKB.
GO:0048675 P:axon extension TAS:UniProtKB.
GO:0007411 P:axon guidance TAS:Reactome.
GO:0048148 P:behavioral response to cocaine IEA:Compara.
GO:0007596 P:blood coagulation TAS:Reactome.
GO:0070509 P:calcium ion import IEA:Compara.
GO:0051301 P:cell division IEA:UniProtKB-KW.
GO:0008283 P:cell proliferation TAS:ProtInc.
GO:0007160 P:cell-matrix adhesion IEA:Compara.
GO:0021954 P:central nervous system neuron development IEA:Compara.
GO:0021697 P:cerebellar cortex formation IEA:Compara.
GO:0022038 P:corpus callosum development IEA:Compara.
GO:0030866 P:cortical actin cytoskeleton organization IEA:Compara.
GO:0048813 P:dendrite morphogenesis IEA:Compara.
GO:0009790 P:embryo development ISS:UniProtKB.
GO:0021766 P:hippocampus development IEA:Compara.
GO:0006886 P:intracellular protein transport IEA:Compara.
GO:0021819 P:layer formation in cerebral cortex IEA:Compara.
GO:0008045 P:motor axon guidance IEA:Compara.
GO:0045786 P:negative regulation of cell cycle IEA:Compara.
GO:0046826 P:negative regulation of protein export from nucleus IEA:Compara.
GO:0031397 P:negative regulation of protein ubiquitination IEA:Compara.
GO:0031914 P:negative regulation of synaptic plasticity IEA:Compara.
GO:0045892 P:negative regulation of transcription, DNA-dependent IMP:DFLAT.
GO:0051402 P:neuron apoptotic process TAS:UniProtKB.
GO:0001764 P:neuron migration TAS:UniProtKB.
GO:0006913 P:nucleocytoplasmic transport IEA:Compara.
GO:0048709 P:oligodendrocyte differentiation IDA:UniProtKB.
GO:0018105 P:peptidyl-serine phosphorylation IDA:UniProtKB.
GO:0018107 P:peptidyl-threonine phosphorylation IEA:Compara.
GO:2000251 P:positive regulation of actin cytoskeleton reorganization TAS:UniProtKB.
GO:0045956 P:positive regulation of calcium ion-dependent exocytosis IEA:Compara.
GO:0043525 P:positive regulation of neuron apoptotic process ISS:UniProtKB.
GO:0032092 P:positive regulation of protein binding IEA:Compara.
GO:0045860 P:positive regulation of protein kinase activity IEA:Compara.
GO:0090314 P:positive regulation of protein targeting to membrane IEA:Compara.
GO:0046777 P:protein autophosphorylation IEA:Compara.
GO:0035418 P:protein localization to synapse IEA:Compara.
GO:0032801 P:receptor catabolic process IEA:Compara.
GO:0043113 P:receptor clustering IEA:Compara.
GO:0045055 P:regulated secretory pathway IEA:Compara.
GO:0071156 P:regulation of cell cycle arrest TAS:UniProtKB.
GO:0030334 P:regulation of cell migration IEA:Compara.
GO:0061001 P:regulation of dendritic spine morphogenesis ISS:UniProtKB.
GO:0060079 P:regulation of excitatory postsynaptic membrane potential IEA:Compara.
GO:0048167 P:regulation of synaptic plasticity ISS:UniProtKB.
GO:0014044 P:Schwann cell development IEA:Compara.
GO:0019233 P:sensory perception of pain IEA:Compara.
GO:0033136 P:serine phosphorylation of STAT3 protein IEA:Compara.
GO:0007519 P:skeletal muscle tissue development IEA:Compara.
GO:0007416 P:synapse assembly TAS:UniProtKB.
GO:0001963 P:synaptic transmission, dopaminergic IEA:Compara.
GO:0035249 P:synaptic transmission, glutamatergic IEA:Compara.
GO:0048488 P:synaptic vesicle endocytosis TAS:UniProtKB.
GO:0016079 P:synaptic vesicle exocytosis TAS:UniProtKB.
GO:0008542 P:visual learning IEA:Compara.
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Interpro
IPR011009;    Kinase-like_dom.
IPR000719;    Prot_kinase_cat_dom.
IPR017441;    Protein_kinase_ATP_BS.
IPR002290;    Ser/Thr_dual-sp_kinase_dom.
IPR008271;    Ser/Thr_kinase_AS.
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Pfam
PF00069;    Pkinase;    1.
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SMART
SM00220;    S_TKc;    1.
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PROSITE
PS00107;    PROTEIN_KINASE_ATP;    1.
PS50011;    PROTEIN_KINASE_DOM;    1.
PS00108;    PROTEIN_KINASE_ST;    1.
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PRINTS
Created Date
18-Oct-2012 
Record Type
Experiment identified 
Protein sequence Annotation
CHAIN         1    292       Cyclin-dependent kinase 5.
                             /FTId=PRO_0000085784.
DOMAIN        4    286       Protein kinase.
NP_BIND      10     18       ATP (By similarity).
ACT_SITE    126    126       Proton acceptor (By similarity).
BINDING      33     33       ATP (By similarity).
MOD_RES      14     14       Phosphothreonine.
MOD_RES      15     15       Phosphotyrosine; by ABL1, EPHA4 and FYN.
MOD_RES      17     17       Phosphothreonine.
MOD_RES      46     46       Phosphoserine.
MOD_RES      56     56       N6-acetyllysine.
MOD_RES      72     72       Phosphoserine.
MOD_RES     159    159       Phosphoserine (By similarity).
MOD_RES     239    239       Phosphotyrosine.
VAR_SEQ     105    136       Missing (in isoform 2).
                             /FTId=VSP_041948.
VARIANT     225    225       E -> D (in dbSNP:rs35186917).
                             /FTId=VAR_041977.
MUTAGEN     159    159       S->A: No phenotype.
MUTAGEN     159    159       S->T: Impaired p35/p25 (CDK5R1) binding.
STRAND        3     12
STRAND       14     23
TURN         24     26
STRAND       29     38
STRAND       40     42
HELIX        44     55
STRAND       66     72
STRAND       75     81
STRAND       84     86
HELIX        87     93
TURN         94     96
HELIX       100    119
HELIX       129    131
STRAND      132    134
STRAND      140    142
HELIX       145    147
HELIX       165    167
HELIX       170    173
HELIX       182    195
TURN        196    198
HELIX       208    219
TURN        224    226
HELIX       230    232
TURN        249    251
HELIX       257    266
HELIX       271    273
HELIX       277    281
HELIX       284    286
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Nucleotide Sequence
Length: 983 bp   Go to nucleotide: FASTA
Protein Sequence
Length: 292 bp   Go to amino acid: FASTA
The verified Protein-Protein interaction information
UniProt
Gene Symbol Ref Databases
NDEL1BioGRID 
CABL1HPRD 
ABL1HPRD 
ADIPOQString 
_BioGRID 
BRCA1BioGRID 
CABLES1HPRD 
CABLES2HPRD 
CCND2HPRD 
CCNG1HPRD 
CDK5R1HPRD 
CDK5R2HPRD 
CDC37HPRD 
Cdk1IntAct 
MAP2K1HPRD 
APPHPRD 
NDEL1BioGRID 
ADIPOQString 
AMPHHPRD 
PPP1R1BHPRD 
_BioGRID 
_HPRD 
CCND2BioGRID 
CDK5R1BioGRID 
CDK16HPRD 
CDK5HPRD 
CDK5HPRD 
CDKN1BIntAct 
C1orf61HPRD 
DAB1HPRD 
DCXHPRD 
DNM1HPRD 
ERBB3HPRD 
EZRHPRD 
PPP1R2HPRD 
LMTK2BioGRID 
MAST1IntAct 
MEF2AHPRD 
MAPK10HPRD 
MAP2K1HPRD 
NDEL1HPRD 
NESHPRD 
GRIN2AHPRD 
TP53HPRD 
PAK1HPRD 
POLDIP3String 
PIP5K1CHPRD 
PPP1R1BHPRD 
PARK2BioGRID 
PSEN1HPRD 
PTPN2HPRD 
_IntAct 
ACTN1HPRD 
_HPRD 
NR2AHPRD 
_HPRD 
PARK2BioGRID 
PARK2BioGRID 
PPP1R2HPRD 
_IntAct 
CDK5R1BioGRID 
PCTK1BioGRID 
_HPRD 
Suds3BioGRID 
SRCHPRD 
SYN1HPRD 
Synj1MINT 
MAPTMINT 
MaptMINT 
WASF1HPRD 
CDKN1AIntAct 
CDKN1BHPRD 
CHN1HPRD 
CDK5RAP1HPRD 
CDK5RAP2BioGRID 
BRCA1BioGRID 
FSD1HPRD 
FYNHPRD 
GAKHPRD 
GSK3BHPRD 
HDAC4BioGRID 
CSNK1DHPRD 
NDEL1BioGRID 
NESBioGRID 
TP53BioGRID 
PCNAHPRD 
POLDIP3String 
PARK2BioGRID 
PSEN1IntAct 
PURAHPRD 
SYNJ1HPRD 
CDK5RAP2BioGRID 
BRCA1BioGRID 
BRCA1BioGRID 
_BioGRID 
_HPRD 
PARK2BioGRID 
PARK2BioGRID 
SETHPRD 
CDK5R2HPRD 
stxbp1BioGRID 
CDKN1BHPRD 
BRCA1BioGRID 
AATKIntAct 
STX1AHPRD 
HDAC4BioGRID 
CDK5R1HPRD 
_BioGRID 
RNF32IntAct 
SETHPRD 
STX1AHPRD 
STXBP1HPRD 
SYNJ1HPRD 
Other Protein-Protein interaction resources
String database  
View Microarray data
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