Tag Content
SG ID
SG00001833 
UniProt Accession
Theoretical PI
10.4  
Molecular Weight
31288 Da  
Genbank Nucleotide ID
 
Genbank Protein ID
 
Gene Name
Csda 
Gene Synonyms/Alias
 
Protein Name
 
Protein Synonyms/Alias
SubName: DNA-binding protein A 
Organism
Rattus norvegicus (Rat) 
NCBI Taxonomy ID
10116 
Chromosome Location
chr:4;169076514-169099854;-1
View in Ensembl genome browser  
Function in Stage
Function in Cell Type
Description
Temporarily unavailable 
The information of related literatures
1. Y. Iuchi, T. Kobayashi, T. Kaneko, M. Takahara, T. Ogino and J. Fujii (2001) Expression of a Y-box protein, YB2/RYB-a, precedes protamine 2 expression during spermatogenesis in rodents. Mol Hum Reprod 7(11): 1023-31. 

Abstract
Y-box binding proteins, a large family of proteins, are involved in a variety of functions. The present study describes the expression of YB2, a rat Y-box binding protein, and/or RYB-a, an alternatively spliced product of the YB2 gene during spermatogenesis. YB2/RYB-a is thought to be the rat orthologue of mouse Y-box protein 3 (MSY3). An antibody which recognizes YB2/RYB-a was developed and applied in an immunochemical study of rat and mouse testes. We also carried out an in-situ hybridization study and Northern blot analysis of YB2/RYB-a and protamine 2 mRNA expression. Both YB2/RYB-a mRNA and the proteins appeared in prepubertal mouse testes, prior to the expression of the mouse protamine 2 mRNA. The mRNA and protein were present at high levels in spermatocytes, decreased in round to elongated spermatids, and were absent in spermatozoa. Since the protamine 2 mRNA was present at high levels in round and elongating spermatids, the proposed function of the YB2/RYB-a protein as a translational repressor of the mRNA was supported in mouse. The level and localization of YB2/RYB-a mRNA and protein expression in the rat testis was comparable to that in mouse testis, although rat testis is known to express a very low level of protamine 2, but is also likely to affect the expression of other proteins (including protamine 1) during spermatogenesis. PMID: [11675468] 

Back to Top
Figures for illustrating the function of this protein/gene
Function
 
Back to Top
Subcellular Location
 
Tissue Specificity
 
Gene Ontology
GO IDGO termEvidence
GO:0003677 F:DNA binding IEA:InterPro.
GO:0006355 P:regulation of transcription, DNA-dependent IEA:InterPro.
Back to Top
Interpro
IPR019844;    Cold-shock_CS.
IPR011129;    Cold_shock_prot.
IPR002059;    CSP_DNA-bd.
IPR012340;    NA-bd_OB-fold.
IPR016027;    NA-bd_OB-fold-like.
Back to Top
Pfam
PF00313;    CSD;    1.
Back to Top
SMART
SM00357;    CSP;    1.
Back to Top
PROSITE
PS00352;    COLD_SHOCK;    1.
Back to Top
PRINTS
PR00050;    COLDSHOCK.;   
Back to Top
Created Date
18-Oct-2012 
Record Type
Experiment identified 
Protein sequence Annotation
Nucleotide Sequence
Length: bp   Go to nucleotide: FASTA
Protein Sequence
Length: 291 bp   Go to amino acid: FASTA
The verified Protein-Protein interaction information
UniProt
Gene Symbol Ref Databases
Other Protein-Protein interaction resources
String database  
View Microarray data
Temporarily unavailable 
Comments