Tag Content
SG ID
SG00001897 
UniProt Accession
Theoretical PI
7.92  
Molecular Weight
51194 Da  
Genbank Nucleotide ID
Genbank Protein ID
Gene Name
Rxra 
Gene Synonyms/Alias
ORFNames=rCG_45555 
Protein Name
 
Protein Synonyms/Alias
SubName: Retinoic acid receptor RXR-alphaSubName: Retinoid X receptor alphaSubName: Retinoid X receptor alpha, isoform CRA_a 
Organism
Rattus norvegicus (Rat) 
NCBI Taxonomy ID
10116 
Chromosome Location
chr:3;6605755-6689778;1
View in Ensembl genome browser  
Function in Stage
Function in Cell Type
Description
Temporarily unavailable 
The information of related literatures
1. K. Thomas, D. Y. Sung, X. Chen, W. Thompson, Y. E. Chen, J. McCarrey, W. Walker and M. Griswold (2011) Developmental patterns of PPAR and RXR gene expression during spermatogenesis. Front Biosci (Elite Ed) 3(): 1209-20. 

Abstract
Members of the family of nuclear receptors that include peroxisome proliferator-activated receptors (PPARs) and retinoid X receptors (RXRs) are important mediators of selective gene activation during development and cellular differentiation. In this study, developmentally-specific PPAR and RXR patterns of expression that occur in somatic and germ cell populations in the testis were determined using quantative real-time PCR (qRT-PCR) studies on RNAs that were isolated from StaPut purified mouse germ cells and primary rat Sertoli cells. These qRT-PCR studies indicate that transcripts encoding the PPAR-Alpha (alpha), -Beta (beta), and -Gamma (gamma) and RXR -Alpha (alpha), -Beta (beta), and -Gamma (gamma) are developmentally expressed in both differentiating germ and Sertoli cells. In further experiments aimed at deciphering the physiological role that PPAR-Gamma (gamma) plays in Sertoli cells, 15-day primary rat Sertoli cells were infected with recombinant adenoviral vectors containing PPAR-Gamma (gamma) cDNA and PPAR-Gamma (gamma) RNAi constructs. Affymetrix microarray analysis and qRT-PCR validation studies using total RNA isolated from these transfected cells indicated that PPAR-Gamma regulates the pattern of expression of key lipid metabolic genes in Sertoli cells. PMID: [21622127] 

Back to Top
Figures for illustrating the function of this protein/gene
Function
 
Back to Top
Subcellular Location
 
Tissue Specificity
 
Gene Ontology
GO IDGO termEvidence
GO:0000790 C:nuclear chromatin IEA:Compara.
GO:0004886 F:9-cis retinoic acid receptor activity IEA:Compara.
GO:0031490 F:chromatin DNA binding IEA:Compara.
GO:0044323 F:retinoic acid-responsive element binding IEA:Compara.
GO:0043565 F:sequence-specific DNA binding IEA:Compara.
GO:0003707 F:steroid hormone receptor activity IEA:InterPro.
GO:0070644 F:vitamin D response element binding IEA:Compara.
GO:0008270 F:zinc ion binding IEA:InterPro.
GO:0060038 P:cardiac muscle cell proliferation IEA:Compara.
GO:0000122 P:negative regulation of transcription from RNA polymerase II promoter IEA:Compara.
GO:0035357 P:peroxisome proliferator activated receptor signaling pathway IEA:Compara.
GO:0045944 P:positive regulation of transcription from RNA polymerase II promoter IEA:Compara.
GO:0060687 P:regulation of branching involved in prostate gland morphogenesis IEA:Compara.
GO:0060528 P:secretory columnal luminar epithelial cell differentiation involved in prostate glandular acinus development IEA:Compara.
GO:0055012 P:ventricular cardiac muscle cell differentiation IEA:Compara.
GO:0055010 P:ventricular cardiac muscle tissue morphogenesis IEA:Compara.
GO:0019048 P:virus-host interaction IEA:Compara.
Back to Top
Interpro
IPR021780;    DUF3345.
IPR008946;    Nucl_hormone_rcpt_ligand-bd.
IPR000536;    Nucl_hrmn_rcpt_lig-bd_core.
IPR000003;    Retinoid-X_rcpt/HNF4.
IPR001723;    Str_hrmn_rcpt.
IPR001628;    Znf_hrmn_rcpt.
IPR013088;    Znf_NHR/GATA.
Back to Top
Pfam
PF00104;    Hormone_recep;    1.
PF11825;    Nuc_recep-AF1;    1.
PF00105;    zf-C4;    1.
Back to Top
SMART
SM00430;    HOLI;    1.
SM00399;    ZnF_C4;    1.
Back to Top
PROSITE
PS00031;    NUCLEAR_REC_DBD_1;    1.
PS51030;    NUCLEAR_REC_DBD_2;    1.
Back to Top
PRINTS
PR00545;    RETINOIDXR.;   
PR00398;    STRDHORMONER.;   
PR00047;    STROIDFINGER.;   
Back to Top
Created Date
18-Oct-2012 
Record Type
Experiment identified 
Protein sequence Annotation
Nucleotide Sequence
Length: bp   Go to nucleotide: FASTA
Protein Sequence
Length: 467 bp   Go to amino acid: FASTA
The verified Protein-Protein interaction information
UniProt
Gene Symbol Ref Databases
Other Protein-Protein interaction resources
String database  
View Microarray data
Temporarily unavailable 
Comments