Tag Content
SG ID
SG00001948 
UniProt Accession
Theoretical PI
8.89  
Molecular Weight
36877 Da  
Genbank Nucleotide ID
 
Genbank Protein ID
 
Gene Name
Nfya 
Gene Synonyms/Alias
 
Protein Name
 
Protein Synonyms/Alias
SubName: Nuclear transcription factor Y subunit alpha 
Organism
Rattus norvegicus (Rat) 
NCBI Taxonomy ID
10116 
Chromosome Location
chr:9;7970048-7994375;1
View in Ensembl genome browser  
Function in Stage
Function in Cell Type
Description
Temporarily unavailable 
The information of related literatures
1. J. M. VanWert, S. A. Wolfe and S. R. Grimes (2008) Binding of RFX2 and NF-Y to the testis-specific histone H1t promoter may be required for transcriptional activation in primary spermatocytes. J Cell Biochem 104(3): 1087-101. 

Abstract
The testis-specific linker histone H1t is transcribed exclusively in pachytene spermatocytes during spermatogenesis. The H1t promoter contains two imperfect inverted repeats which together comprise the X-box motif that is known to bind the transcription factor regulatory factor X (RFX). Out of all the histone H1 family promoters this motif appears only in the H1t promoter and may contribute to H1t tissue-specific expression. We show by Western blotting, EMSA, ChIP analysis, and real-time RT-PCR that the rat H1t X-box is bound by RFX2 in vivo in spermatocytes. We demonstrate that transcription factor NF-Y binds to the CCAAT-box motif that is located downstream and adjacent to the X-box and that testis NF-Y interacts either directly or indirectly with RFX2. Furthermore, we show that both the X-box and CCAAT-box are required for promoter activity and that co-expression of RFX2 greatly enhances testis histone H1t promoter activity in the GC-1spg germinal cell line. PMID: [18247329] 

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Figures for illustrating the function of this protein/gene
Function
 
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Subcellular Location
 
Tissue Specificity
 
Gene Ontology
GO IDGO termEvidence
GO:0016602 C:CCAAT-binding factor complex IEA:InterPro.
GO:0003677 F:DNA binding IEA:InterPro.
GO:0003700 F:sequence-specific DNA binding transcription factor activity IEA:InterPro.
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Interpro
IPR018362;    CCAAT-binding_factor_CS.
IPR001289;    TF_CBFB.
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Pfam
PF02045;    CBFB_NFYA;    1.
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SMART
SM00521;    CBF;    1.
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PROSITE
PS00686;    NFYA_HAP2_1;    1.
PS51152;    NFYA_HAP2_2;    1.
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PRINTS
PR00616;    CCAATSUBUNTB.;   
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Created Date
18-Oct-2012 
Record Type
Experiment identified 
Protein sequence Annotation
Nucleotide Sequence
Length: bp   Go to nucleotide: FASTA
Protein Sequence
Length: 347 bp   Go to amino acid: FASTA
The verified Protein-Protein interaction information
UniProt
Gene Symbol Ref Databases
Other Protein-Protein interaction resources
String database  
View Microarray data
Temporarily unavailable 
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