Tag Content
SG ID
SG00001954 
UniProt Accession
Theoretical PI
6.09  
Molecular Weight
50462 Da  
Genbank Nucleotide ID
 
Genbank Protein ID
 
Gene Name
Casp9 
Gene Synonyms/Alias
 
Protein Name
Caspase 
Protein Synonyms/Alias
 
Organism
Rattus norvegicus (Rat) 
NCBI Taxonomy ID
10116 
Chromosome Location
chr:5;160704225-160721800;1
View in Ensembl genome browser  
Function in Stage
Function in Cell Type
Description
Temporarily unavailable 
The information of related literatures
1. R. D. Moreno, C. Lizama, N. Urzua, S. P. Vergara and J. G. Reyes (2006) Caspase activation throughout the first wave of spermatogenesis in the rat. Cell Tissue Res 325(3): 533-40. 

Abstract
Early in postnatal life, the first wave of spermatogenesis is accompanied by an initial wave of germ cell apoptosis. This may reflect an adjustment in the number of germ cells that can be adequately maintained by Sertoli cells. Two major pathways (intrinsic and extrinsic) are involved in the process of caspase activation and apoptosis in mammalian cells. The extrinsic pathway is characterized by the oligomerization of death receptors such as FAS or tumor necrosis factor, followed by the activation of caspase-8 and caspase-3. The intrinsic pathway involves the activation of procaspase-9, which in turn activates caspase-3. Extensive information is available concerning apoptotic inducers and their possible mechanisms in the adult rat. However, no data exist regarding the molecular and cellular mechanisms governing physiological cell death during puberty in the male rat. We have studied caspase activation throughout the first wave of spermatogenesis in the rat under physiological conditions, by combining the TUNEL procedure with the localization of active caspases in germ cells. We observed TUNEL-positive germ cells in rats of 5-40 days of age, the highest number being found in 25-day-old rats. TUNEL-positive and caspase-3-positive germ cells appeared as long chains of interconnected germ cells in 25-day-old rats. Caspase activation was assayed by either immunohistochemistry with antibodies against active caspase-3, -8, and -9, or by determining enzymatic activity in seminiferous tubules extracts. Both techniques showed activation of caspase-3, -8, and -9 in 25-day-old rats and low enzymatic activity at other ages. Confocal scanning laser microscopy indicated that active caspase-3, -8, and -9 co-localized with TUNEL-positive cells. Thus, caspase-3, -8, and -9 are active in apoptotic germ cells during the first wave of rat spermatogenesis. The extrinsic pathway of apoptosis may therefore play an important role in germ cell apoptosis during puberty in the rat. PMID: [16598500] 

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Figures for illustrating the function of this protein/gene
Function
 
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Subcellular Location
 
Tissue Specificity
 
Gene Ontology
GO IDGO termEvidence
GO:0043293 C:apoptosome IEA:Compara.
GO:0005634 C:nucleus IEA:Compara.
GO:0005625 C:soluble fraction IEA:Compara.
GO:0004197 F:cysteine-type endopeptidase activity IEA:InterPro.
GO:0006919 P:activation of cysteine-type endopeptidase activity involved in apoptotic process IEA:Compara.
GO:0071549 P:cellular response to dexamethasone stimulus IEA:Compara.
GO:0043525 P:positive regulation of neuron apoptotic process IEA:Compara.
GO:0006508 P:proteolysis IEA:UniProtKB-KW.
GO:0006974 P:response to DNA damage stimulus IEA:Compara.
GO:0009411 P:response to UV IEA:Compara.
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Interpro
IPR001315;    CARD.
IPR017350;    Caspase_IL-1_beta.
IPR011029;    DEATH-like.
IPR011600;    Pept_C14_cat.
IPR001309;    Pept_C14_ICE_p20.
IPR016129;    Pept_C14_ICE_p20_AS.
IPR002138;    Pept_C14_p10.
IPR002398;    Pept_C14_p45.
IPR015917;    Pept_C14_p45_core.
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Pfam
PF00619;    CARD;    1.
PF00656;    Peptidase_C14;    1.
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SMART
SM00114;    CARD;    1.
SM00115;    CASc;    1.
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PROSITE
PS50209;    CARD;    1.
PS01122;    CASPASE_CYS;    1.
PS01121;    CASPASE_HIS;    1.
PS50207;    CASPASE_P10;    1.
PS50208;    CASPASE_P20;    1.
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PRINTS
PR00376;    IL1BCENZYME.;   
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Created Date
18-Oct-2012 
Record Type
Experiment identified 
Protein sequence Annotation
ACT_SITE    275    275       By similarity.
ACT_SITE    325    325       By similarity.
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Nucleotide Sequence
Length: bp   Go to nucleotide: FASTA
Protein Sequence
Length: 454 bp   Go to amino acid: FASTA
The verified Protein-Protein interaction information
UniProt
Gene Symbol Ref Databases
Other Protein-Protein interaction resources
String database  
View Microarray data
Temporarily unavailable 
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