Tag Content
SG ID
SG00001997 
UniProt Accession
Theoretical PI
5.05  
Molecular Weight
53701 Da  
Genbank Nucleotide ID
Genbank Protein ID
Gene Name
Vim 
Gene Synonyms/Alias
ORFNames=rCG_55877 
Protein Name
 
Protein Synonyms/Alias
SubName: Uncharacterized proteinSubName: Vimentin, isoform CRA_b 
Organism
Rattus norvegicus (Rat) 
NCBI Taxonomy ID
10116 
Chromosome Location
chr:17;87847240-87855757;1
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Function in Stage
Function in Cell Type
Description
Temporarily unavailable 
The information of related literatures
1. M. Kopecky, V. Semecky and P. Nachtigal (2005) Vimentin expression during altered spermatogenesis in rats. Acta Histochem 107(4): 279-89. 

Abstract
The collapse of vimentin caused by some xenobiotics correlates with the loss of structural integrity of the seminiferous epithelium. In this study, we investigated the effect of busulphan (an anticancer drug with toxic effects on dividing germ cells) on vimentin filament distribution in rat seminiferous epithelium and compared it with changes found in testes of unilaterally cryptorchid rats. In the seminiferous epithelium, the vimentin labelling was observed only in the Sertoli cells, showing a stage-specific arrangement of the filaments. Both busulphan treatment and cryptorchism caused altered distribution of vimentin filaments in the Sertoli cells. In both models, the apical vimentin filaments collapsed towards the nuclei and were disorganized in the basal region of the Sertoli cells while the germ cells were diminished in the epithelium. After the busulphan effect subsided (4 weeks after administration), spermatogenesis began to restore and vimentin filaments began to organize in basal and perinuclear regions of Sertoli cells among the spermatogonia and spermatocytes. Vimentin labelling of the sloughed material in the lumen of cryptorchid testes (but not in busulphan treated animals) was observed. We conclude that the Sertoli cell vimentin filaments play an important role in the maintenance of spermatogenesis, their damage is associated with the seminiferous epithelium disintegration and their restoration with a recovery of spermatogenesis after the unfavourable conditions subside. PMID: [16139876] 

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Figures for illustrating the function of this protein/gene
Function
 
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Subcellular Location
 
Tissue Specificity
 
Gene Ontology
GO IDGO termEvidence
GO:0005882 C:intermediate filament IEA:UniProtKB-KW.
GO:0005198 F:structural molecule activity IEA:InterPro.
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Interpro
IPR016044;    F.
IPR001664;    IF.
IPR006821;    Intermed_filament_DNA-bd.
IPR018039;    Intermediate_filament_CS.
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Pfam
PF00038;    Filament;    1.
PF04732;    Filament_head;    1.
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SMART
PROSITE
PS00226;    IF;    1.
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PRINTS
Created Date
18-Oct-2012 
Record Type
Experiment identified 
Protein sequence Annotation
Nucleotide Sequence
Length: bp   Go to nucleotide: FASTA
Protein Sequence
Length: 466 bp   Go to amino acid: FASTA
The verified Protein-Protein interaction information
UniProt
Gene Symbol Ref Databases
Other Protein-Protein interaction resources
String database  
View Microarray data
Temporarily unavailable 
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