Tag Content
SG ID
SG00002064 
UniProt Accession
Theoretical PI
5.23  
Molecular Weight
105633 Da  
Genbank Nucleotide ID
 
Genbank Protein ID
 
Gene Name
Nfkb1 
Gene Synonyms/Alias
 
Protein Name
 
Protein Synonyms/Alias
SubName: Nuclear factor NF-kappa-B p50 subunit 
Organism
Rattus norvegicus (Rat) 
NCBI Taxonomy ID
10116 
Chromosome Location
chr:2;233091020-233187501;-1
View in Ensembl genome browser  
Function in Stage
Function in Cell Type
Description
Temporarily unavailable 
The information of related literatures
1. L. Zhang, M. Charron, W. W. Wright, B. Chatterjee, C. S. Song, A. K. Roy and T. R. Brown (2004) Nuclear factor-kappaB activates transcription of the androgen receptor gene in Sertoli cells isolated from testes of adult rats. Endocrinology 145(2): 781-9. 

Abstract
The androgen receptor (AR) in Sertoli cells mediates the actions of testosterone on spermatogenesis. However, the transcription factors responsible for AR gene regulation in Sertoli cells remain unknown. In this study, we determined that nuclear factor-kappaB (NF-kappaB) regulates transcription of AR in primary cultures of Sertoli cells isolated from testes of adult rats. Electrophoretic mobility shift and antibody supershift assays with nuclear extracts prepared from Sertoli cells identified two binding sites, termed kappaB1 at -491/-482 bp and kappaB2 at -574/-565 bp, upstream of the transcription start site of the AR gene that bind the NF-kappaB subunits, p50 and p65. DNAse I footprint analyses showed that binding of the p50 NF-kappaB subunit protected the same regions on the rat AR promoter. Analyses of AR promoter-luciferase reporter gene activity after transfection of primary cultures of Sertoli cells demonstrated that mutation of the kappaB2 site or combined mutation of the kappaB1 and kappaB2 sites reduced activity by 40%. Preferential binding of the transcriptionally active p65/p50 heterodimer to the kappaB2 site rather than to the kappaB1 site supported these observations. Overexpression of the NF-kappaB p65 and p50 subunits in Sertoli cells increased activity from the wild-type AR promoter and the promoter with mutation of the kappaB1 site, but not the kappaB2 site. Activity was further stimulated by CBP (CREB binding protein), a coactivator of p65 transcriptional activity. Taken together, our data show that NF-kappaB is an activator of AR gene transcription in Sertoli cells and may be an important determinant of androgen activity during spermatogenesis. PMID: [14576180] 

2. K. Mizuno, Y. Hayashi, Y. Kojima, A. Nakane, K. Tozawa and K. Kohri (2009) Activation of NF-kappaB associated with germ cell apoptosis in testes of experimentally induced cryptorchid rat model. Urology 73(2): 389-93. 

Abstract
OBJECTIVES PMID: [19036417] 

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Figures for illustrating the function of this protein/gene
Function
 
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Subcellular Location
 
Tissue Specificity
 
Gene Ontology
GO IDGO termEvidence
GO:0005829 C:cytosol IEA:Compara.
GO:0005739 C:mitochondrion IEA:Compara.
GO:0005634 C:nucleus IEA:UniProtKB-KW.
GO:0003700 F:sequence-specific DNA binding transcription factor activity IEA:InterPro.
GO:0000976 F:transcription regulatory region sequence-specific DNA binding IEA:Compara.
GO:0071347 P:cellular response to interleukin-1 IEA:Compara.
GO:0071260 P:cellular response to mechanical stimulus IEA:Compara.
GO:0010956 P:negative regulation of calcidiol 1-monooxygenase activity IEA:Compara.
GO:0001818 P:negative regulation of cytokine production IEA:Compara.
GO:0045083 P:negative regulation of interleukin-12 biosynthetic process IEA:Compara.
GO:0045892 P:negative regulation of transcription, DNA-dependent IEA:Compara.
GO:0090263 P:positive regulation of canonical Wnt receptor signaling pathway IEA:Compara.
GO:1900127 P:positive regulation of hyaluronan biosynthetic process IEA:Compara.
GO:0045944 P:positive regulation of transcription from RNA polymerase II promoter IEA:Compara.
GO:0007165 P:signal transduction IEA:InterPro.
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Interpro
IPR002110;    Ankyrin_rpt.
IPR020683;    Ankyrin_rpt-contain_dom.
IPR000488;    Death.
IPR011029;    DEATH-like.
IPR013783;    Ig-like_fold.
IPR014756;    Ig_E-set.
IPR002909;    IPT_TIG_rcpt.
IPR000451;    NF_Rel_dor.
IPR008967;    p53-like_TF_DNA-bd.
IPR011539;    RHD.
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Pfam
PF12796;    Ank_2;    2.
PF00531;    Death;    1.
PF00554;    RHD;    1.
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SMART
SM00248;    ANK;    6.
SM00005;    DEATH;    1.
SM00429;    IPT;    1.
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PROSITE
PS50297;    ANK_REP_REGION;    1.
PS50088;    ANK_REPEAT;    4.
PS01204;    REL_1;    1.
PS50254;    REL_2;    1.
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PRINTS
PR01415;    ANKYRIN.;   
PR00057;    NFKBTNSCPFCT.;   
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Created Date
18-Oct-2012 
Record Type
Experiment identified 
Protein sequence Annotation
Nucleotide Sequence
Length: bp   Go to nucleotide: FASTA
Protein Sequence
Length: 972 bp   Go to amino acid: FASTA
The verified Protein-Protein interaction information
UniProt
Gene Symbol Ref Databases
Other Protein-Protein interaction resources
String database  
View Microarray data
Temporarily unavailable 
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