SpermatogenesisOnline 1.0

Tag Content
SG ID
SG00012104 
UniProt Accession
Theoretical PI
4.78  
Molecular Weight
16767 Da  
Genbank Nucleotide ID
Genbank Protein ID
Gene Name
Calm4 
Gene Synonyms/Alias
Dd112 
Protein Name
Calmodulin-4 
Protein Synonyms/Alias
Calcium-binding protein Dd112; 
Organism
Mus musculus (Mouse) 
NCBI Taxonomy ID
10090 
Chromosome Location
chr:13;3837003-3837917;1
View in Ensembl genome browser  
Function in Stage
Uncertain 
Function in Cell Type
Uncertain 
Probability (GAS) of Function in Spermatogenesis
0.13012588 
The probability was calculated by GAS algorithm, ranging from 0 to 1. The closer it is to 1, the more possibly it functions in spermatogenesis.
Description
Temporarily unavailable 
Abstract of related literatures
1. This study describes comprehensive polling of transcription start and termination sites and analysis of previously unidentified full-length complementary DNAs derived from the mouse genome. We identify the 5' and 3' boundaries of 181,047 transcripts with extensive variation in transcripts arising from alternative promoter usage, splicing, and polyadenylation. There are 16,247 new mouse protein-coding transcripts, including 5154 encoding previously unidentified proteins. Genomic mapping of the transcriptome reveals transcriptional forests, with overlapping transcription on both strands, separated by deserts in which few transcripts are observed. The data provide a comprehensive platform for the comparative analysis of mammalian transcriptional regulation in differentiation and development. PMID: [16141072] 

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Function
Implicated in the early stage of ectopic ossification. 
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Subcellular Location
 
Tissue Specificity
 
Gene Ontology
GO IDGO termEvidence
GO:0005509 F:calcium ion binding IDA:MGI.
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Interpro
IPR011992;    EF-hand-like_dom.
IPR018247;    EF_Hand_1_Ca_BS.
IPR018249;    EF_HAND_2.
IPR002048;    EF_hand_Ca-bd.
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Pfam
SMART
SM00054;    EFh;    4.
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PROSITE
PS00018;    EF_HAND_1;    3.
PS50222;    EF_HAND_2;    4.
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PRINTS
Created Date
18-Oct-2012 
Record Type
GAS predicted 
Sequence Annotation
CHAIN         1    148       Calmodulin-4.
                             /FTId=PRO_0000073856.
DOMAIN        8     43       EF-hand 1.
DOMAIN       44     79       EF-hand 2.
DOMAIN       80    115       EF-hand 3.
DOMAIN      116    148       EF-hand 4.
CA_BIND      21     32       1 (Potential).
CA_BIND      57     68       2 (Potential).
CA_BIND      93    104       3 (Potential).
CONFLICT      9      9       E -> V (in Ref. 2; BAB22914).
CONFLICT    124    124       M -> V (in Ref. 2; BAB22914).
CONFLICT    146    148       VEN -> I (in Ref. 1; BAA95412).
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Nucleotide Sequence
Length: 899 bp   Go to nucleotide: FASTA
Protein Sequence
Length: 148 bp   Go to amino acid: FASTA
The verified Protein-Protein interaction information
UniProt
 Gene Symbol Ref Databases
Other Protein-Protein interaction resources
String database  
View Microarray data
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