Tag Content
SG ID
SG00018196 
UniProt Accession
Theoretical PI
8.79  
Molecular Weight
17254 Da  
Genbank Nucleotide ID
Genbank Protein ID
Gene Name
Cklf 
Gene Synonyms/Alias
 
Protein Name
Chemokine-like factor 
Protein Synonyms/Alias
 
Organism
Mus musculus (Mouse) 
NCBI Taxonomy ID
10090 
Chromosome Location
chr:8;106774803-106788836;1
View in Ensembl genome browser  
Function in Stage
Uncertain 
Function in Cell Type
Uncertain 
Probability (GAS) of Function in Spermatogenesis
0.723730759 
The probability was calculated by GAS algorithm, ranging from 0 to 1. The closer it is to 1, the more possibly it functions in spermatogenesis.
Description
Temporarily unavailable 
Abstract of related literatures
1. This study describes comprehensive polling of transcription start and termination sites and analysis of previously unidentified full-length complementary DNAs derived from the mouse genome. We identify the 5' and 3' boundaries of 181,047 transcripts with extensive variation in transcripts arising from alternative promoter usage, splicing, and polyadenylation. There are 16,247 new mouse protein-coding transcripts, including 5154 encoding previously unidentified proteins. Genomic mapping of the transcriptome reveals transcriptional forests, with overlapping transcription on both strands, separated by deserts in which few transcripts are observed. The data provide a comprehensive platform for the comparative analysis of mammalian transcriptional regulation in differentiation and development. PMID: [16141072] 

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Function
May play an important role in inflammation andregeneration of skeletal muscle (By similarity). 
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Subcellular Location
Membrane; Multi-pass membrane protein(Potential). 
Tissue Specificity
 
Gene Ontology
GO IDGO termEvidence
GO:0005615 C:extracellular space IEA:UniProtKB-KW.
GO:0016021 C:integral to membrane IEA:UniProtKB-KW.
GO:0008283 P:cell proliferation IEA:Compara.
GO:0048247 P:lymphocyte chemotaxis IEA:Compara.
GO:0048246 P:macrophage chemotaxis IEA:Compara.
GO:0030593 P:neutrophil chemotaxis IEA:Compara.
GO:0032940 P:secretion by cell IEA:Compara.
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Interpro
IPR008253;    Marvel.
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Pfam
SMART
PROSITE
PS51225;    MARVEL;    1.
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PRINTS
Created Date
18-Oct-2012 
Record Type
GAS predicted 
Sequence Annotation
CHAIN         1    152       Chemokine-like factor.
                             /FTId=PRO_0000186095.
TRANSMEM     19     39       Helical; (Potential).
TRANSMEM     46     66       Helical; (Potential).
TRANSMEM     81    101       Helical; (Potential).
TRANSMEM    108    128       Helical; (Potential).
DOMAIN       13    133       MARVEL.
VAR_SEQ      80    111       Missing (in isoform CKLF4).
                             /FTId=VSP_050599.
VAR_SEQ      80     96       DVINSMVTALCMLIVSV -> ISFPCECRLVSCQLDPS
                             (in isoform CKLF3).
                             /FTId=VSP_050600.
VAR_SEQ      97    152       Missing (in isoform CKLF3).
                             /FTId=VSP_050602.
VAR_SEQ     112    152       VFGFLTVTCTIADCALMCQKLRFRPRQPYQKKSTNDIDDRE
                             -> QGPHRTDLALP (in isoform CKLF5).
                             /FTId=VSP_050603.
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Nucleotide Sequence
Length: 623 bp   Go to nucleotide: FASTA
Protein Sequence
Length: 152 bp   Go to amino acid: FASTA
The verified Protein-Protein interaction information
UniProt
Gene Symbol Ref Databases
Other Protein-Protein interaction resources
String database  
View Microarray data
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