Tag Content
SG ID
SG00020499 
UniProt Accession
Theoretical PI
5.97  
Molecular Weight
88791 Da  
Genbank Nucleotide ID
Genbank Protein ID
Gene Name
Csde1 
Gene Synonyms/Alias
D3Jfr1 
Protein Name
Cold shock domain-containing protein E1 
Protein Synonyms/Alias
 
Organism
Mus musculus (Mouse) 
NCBI Taxonomy ID
10090 
Chromosome Location
chr:3;102824469-102862112;1
View in Ensembl genome browser  
Function in Stage
Uncertain 
Function in Cell Type
Uncertain 
Probability (GAS) of Function in Spermatogenesis
0.621470184 
The probability was calculated by GAS algorithm, ranging from 0 to 1. The closer it is to 1, the more possibly it functions in spermatogenesis.
Description
Temporarily unavailable 
Abstract of related literatures
1. The National Institutes of Health's Mammalian Gene Collection (MGC) project was designed to generate and sequence a publicly accessible cDNA resource containing a complete open reading frame (ORF) for every human and mouse gene. The project initially used a random strategy to select clones from a large number of cDNA libraries from diverse tissues. Candidate clones were chosen based on 5'-EST sequences, and then fully sequenced to high accuracy and analyzed by algorithms developed for this project. Currently, more than 11,000 human and 10,000 mouse genes are represented in MGC by at least one clone with a full ORF. The random selection approach is now reaching a saturation point, and a transition to protocols targeted at the missing transcripts is now required to complete the mouse and human collections. Comparison of the sequence of the MGC clones to reference genome sequences reveals that most cDNA clones are of very high sequence quality, although it is likely that some cDNAs may carry missense variants as a consequence of experimental artifact, such as PCR, cloning, or reverse transcriptase errors. Recently, a rat cDNA component was added to the project, and ongoing frog (Xenopus) and zebrafish (Danio) cDNA projects were expanded to take advantage of the high-throughput MGC pipeline. PMID: [15489334] 

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Function
RNA-binding protein. May be involved in translationallycoupled mRNA turnover. Implicated with other RNA-binding proteinsin the cytoplasmic deadenylation/translational and decay interplayof the FOS mRNA mediated by the major coding-region determinant ofinstability (mCRD) domain (By similarity). 
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Subcellular Location
Cytoplasm (By similarity). 
Tissue Specificity
 
Gene Ontology
GO IDGO termEvidence
GO:0005743 C:mitochondrial inner membrane IDA:MGI.
GO:0003677 F:DNA binding IEA:InterPro.
GO:0003723 F:RNA binding IEA:UniProtKB-KW.
GO:0006355 P:regulation of transcription, DNA-dependent IEA:InterPro.
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Interpro
IPR019844;    Cold-shock_CS.
IPR011129;    Cold_shock_prot.
IPR002059;    CSP_DNA-bd.
IPR012340;    NA-bd_OB-fold.
IPR016027;    NA-bd_OB-fold-like.
IPR024642;    SUZ-C.
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Pfam
PF00313;    CSD;    5.
PF12901;    SUZ-C;    1.
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SMART
SM00357;    CSP;    5.
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PROSITE
PS00352;    COLD_SHOCK;    4.
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PRINTS
Created Date
18-Oct-2012 
Record Type
GAS predicted 
Sequence Annotation
CHAIN         1    798       Cold shock domain-containing protein E1.
                             /FTId=PRO_0000100349.
DOMAIN       26     87       CSD 1.
DOMAIN      136    179       CSD 2; truncated.
DOMAIN      186    245       CSD 3.
DOMAIN      297    337       CSD 4; truncated.
DOMAIN      349    410       CSD 5.
DOMAIN      447    507       CSD 6.
DOMAIN      519    579       CSD 7.
DOMAIN      610    670       CSD 8.
DOMAIN      674    735       CSD 9.
MOD_RES      81     81       N6-acetyllysine (By similarity).
MOD_RES     116    116       Phosphoserine (By similarity).
MOD_RES     123    123       Phosphoserine (By similarity).
MOD_RES     444    444       Phosphothreonine (By similarity).
MOD_RES     445    445       Phosphoserine (By similarity).
MOD_RES     481    481       Phosphothreonine (By similarity).
MOD_RES     514    514       Phosphoserine (By similarity).
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Nucleotide Sequence
Length: 3050 bp   Go to nucleotide: FASTA
Protein Sequence
Length: 798 bp   Go to amino acid: FASTA
The verified Protein-Protein interaction information
UniProt
Gene Symbol Ref Databases
Hoxd3BioGRID 
Nfe2BioGRID 
Hoxd3BioGRID 
Other Protein-Protein interaction resources
String database  
View Microarray data
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