SpermatogenesisOnline


Annotation of Genes/Proteins involved in Spermatogenesis



Prediction:

Greedy AUC Stepwise (GAS) is a novel algorithm, which maximize the AUC for given model. For a K-sparse problem, we assume the numbers of non-zero features should be less than K. Some authors proposed statistic learning to solve such problem such as LASSO, LARS, Compressive Sensing and so on. GAS is different from such regularity methods. When the model is given, such as SVM and logistic regression, GAS will find the best features using a special way of greedy searching.

The probability was calculated by GAS algorithm, ranging from 0 to 1. The closer it is to 1, the more possibly it functions in spermatogenesis. Without enough prior information to optimize the critical point, we suggest to use 0.5 as the cut-off. At that point, both the FPR and FNR are relative low according to our simulation study.

       
SG ID
 
 
Ensembl Gene ID Specie Gene Names
Chromosome
 
 
Start Site End Site Strand
Probability
 
 
SG00022359ENSMUSG00000079710Mus_musculusGm3448171510115315115621-10.999999999
SG00002826ENSMUSG00000004032Mus_musculusGstm5310769873910770160410.99992465
SG00011008ENSMUSG00000031518Mus_musculusSpata48556861345569545110.999923603
SG00020327ENSMUSG00000067702Mus_musculusTuba3a6125228292125236060-10.999748855
SG00020282ENSMUSG00000067338Mus_musculusTuba3b614556427714556999910.999748855
SG00009708ENSMUSG00000029235Mus_musculusPdcl257674114076760181-10.999431506
SG00006555ENSMUSG00000023930Mus_musculusCrisp2174090168340943952-10.999191859
SG00002494ENSMUSG00000001948Mus_musculusSpa1793741088637421199-10.998749788
SG00022841ENSMUSG00000092074Mus_musculusDynlt1a1763105476317474-10.998618056
SG00002239ENSMUSG00000000579Mus_musculusDynlt1c1766469596655064-10.998618056
SG00005865ENSMUSG00000022236Mus_musculusRopn1l153137096531383444-10.998169872
SG00017678ENSMUSG00000051736Mus_musculusFam229b103883861038853720-10.997201182
SG00013727ENSMUSG00000038057Mus_musculusDbil511760311107603216810.997025393
SG00013043ENSMUSG00000036438Mus_musculusCalm2178783275287846275-10.995469954
SG00021479ENSMUSG00000074435Mus_musculusSmcp39238781492392896-10.995344694
SG00014286ENSMUSG00000039209Mus_musculusRpl39l16101703191017500410.995036613
SG00007733ENSMUSG00000026049Mus_musculusTex3014414345844159286-10.993293774
SG00008228ENSMUSG00000026822Mus_musculusLcn223224015332243317-10.992502125
SG00005448ENSMUSG00000021552Mus_musculusGkap1135833471258375549-10.992075295
SG00019618ENSMUSG00000061923Mus_musculusOdf115381489583815649010.988770737
SG00016929ENSMUSG00000048478Mus_musculusSpata33812573675812574594510.987190279
SG00017405ENSMUSG00000050553Mus_musculusGk259788418097886027-10.986063399
SG00010120ENSMUSG00000029883Mus_musculus1700074P13Rik64087043640890556-10.98478129
SG00016750ENSMUSG00000047720Mus_musculus4922502D21Rik6129272183129281814-10.984557611
SG00017766ENSMUSG00000052293Mus_musculusTaf91310142129810142601410.983735368
SG00009823ENSMUSG00000029430Mus_musculusRan512952594412953019810.983327397
SG00012837ENSMUSG00000035785Mus_musculusCmtm2b810684613710685465610.983077238
SG00021113ENSMUSG00000072878Mus_musculus1700123L14Rik69611449796116199-10.98080977
SG00020289ENSMUSG00000067367Mus_musculusLyar5386117093862554510.979461085
SG00013154ENSMUSG00000036752Mus_musculusTubb4b22507768025080222-10.977463178
SG00003360ENSMUSG00000008683Mus_musculusRps15a7125247892125259700-10.976943639
SG00008059ENSMUSG00000026568Mus_musculusMpc2116739116816741134510.976198459
SG00002496ENSMUSG00000001964Mus_musculusEmdX715000267150688710.973743348
SG00004776ENSMUSG00000020462Mus_musculusCfap36112912153229147409-10.973655802
SG00005652ENSMUSG00000021902Mus_musculusPhf7143205088232064404-10.97335475
SG00017693ENSMUSG00000051811Mus_musculusCox6b2747033964704696-10.972523718
SG00019241ENSMUSG00000059695Mus_musculus1700019M22Rik129728483197285432-10.971792844
SG00019213ENSMUSG00000059518Mus_musculusZnhit15137458034137463891-10.97141418
SG00011295ENSMUSG00000031991Mus_musculusSpata199272044062720929510.970499889
SG00012126ENSMUSG00000033826Mus_musculusDnah817307612993101220910.966996212
SG00019449ENSMUSG00000060860Mus_musculusUbe2s747596164763942-10.966703634
SG00021960ENSMUSG00000078812Mus_musculusEif5a116973021669735460-10.966285114
SG00021379ENSMUSG00000074127Mus_musculusCmtm2a8106803853106817078-10.964088658
SG00010406ENSMUSG00000030417Mus_musculusPdcd573642700136432540-10.962644523
SG00013639ENSMUSG00000037910Mus_musculus1700018B24Rik34840965448413023-10.961361725
SG00017425ENSMUSG00000050623Mus_musculusCatsperz1969969166999870-10.959586253
SG00020381ENSMUSG00000068039Mus_musculusTcp117131085671311793310.95811523
SG00020626ENSMUSG00000069805Mus_musculusFbp1136296611362989642-10.956603468
SG00011913ENSMUSG00000033213Mus_musculusAA467197212246272212246692710.956457185
SG00011808ENSMUSG00000032959Mus_musculusPebp15117732660117737634-10.952066569
SG00006504ENSMUSG00000023577Mus_musculusIqcf39106445720106463956-10.951913275
SG00015422ENSMUSG00000042293Mus_musculusGm56179483034504830406910.950699303
SG00008657ENSMUSG00000027564Mus_musculusCypt123178484441784895210.949721235
SG00011035ENSMUSG00000031554Mus_musculusAdam582583756525934841-10.949246601
SG00014147ENSMUSG00000038932Mus_musculusTcfl52180356661180377413-10.948199342
SG00022413ENSMUSG00000084063Mus_musculusGm5934X2405143424077886-10.947103811
SG00022401ENSMUSG00000081218Mus_musculusGm4297X2412937624152021-10.947103811
SG00021191ENSMUSG00000073267Mus_musculusGm1993X2433006624498517-10.947103811
SG00022342ENSMUSG00000079655Mus_musculusGm5168X2545534025478167-10.947103811
SG00022407ENSMUSG00000082639Mus_musculusGm2012X2562780425658481-10.947103811
SG00022411ENSMUSG00000083628Mus_musculusGm2030X2571410325737170-10.947103811
SG00020988ENSMUSG00000071788Mus_musculusGm14525X2609990326129764-10.947103811
SG00022395ENSMUSG00000080725Mus_musculusGm6121X2616206926362823-10.947103811
SG00021189ENSMUSG00000073257Mus_musculusGm10488X291305532915340110.947103811
SG00021188ENSMUSG00000073255Mus_musculusGm14632X294840112950688410.947103811
SG00021186ENSMUSG00000073247Mus_musculusGm10486X326073793263031110.947103811
SG00021185ENSMUSG00000073245Mus_musculusGm14819X329441783296708810.947103811
SG00018634ENSMUSG00000056509Mus_musculusGm99997542389885424316210.94575651
SG00010273ENSMUSG00000030206Mus_musculusGsg16135187347135204354-10.938485492
SG00004784ENSMUSG00000020475Mus_musculusPgam21157016435703736-10.936959206
SG00006822ENSMUSG00000024387Mus_musculusCsnk2b173525314135258998-10.934501694
SG00015198ENSMUSG00000041697Mus_musculusCox6a15115795651115798990-10.933664457
SG00007878ENSMUSG00000026255Mus_musculusEfhd11891609388920741410.926999649
SG00005782ENSMUSG00000022110Mus_musculusSucla214739251267399594910.92525645
SG00006512ENSMUSG00000023806Mus_musculusRsph3b1771090307153070-10.92182358
SG00021230ENSMUSG00000073471Mus_musculusRsph3a178138518817268910.92182358
SG00005896ENSMUSG00000022283Mus_musculusPabpc1153652541636538728-10.921777511
SG00002379ENSMUSG00000001289Mus_musculusPfdn51510215654710216230410.920646669
SG00017289ENSMUSG00000050058Mus_musculusPrm3161079060010791006-10.920037646
SG00004167ENSMUSG00000018509Mus_musculusCenpv116233844862352763-10.918780494
SG00012758ENSMUSG00000035530Mus_musculusEif11110018119910018341010.918466861
SG00003669ENSMUSG00000014075Mus_musculusTctex1d216324197883242918510.913521491
SG00015327ENSMUSG00000042043Mus_musculusTbca13955588989561285410.912960273
SG00003683ENSMUSG00000014301Mus_musculusPam161646164644624988-10.91253394
SG00013049ENSMUSG00000036463Mus_musculus4930544G11Rik6659025656590400610.912199225
SG00004951ENSMUSG00000020719Mus_musculusDdx511106641669106650499-10.909156707
SG00005138ENSMUSG00000021024Mus_musculusPsma612564852095651944110.907329085
SG00005739ENSMUSG00000022037Mus_musculusClu14665873206660038510.906744384
SG00020724ENSMUSG00000070493Mus_musculusChchd25130357027130363340-10.906378048
SG00002688ENSMUSG00000003153Mus_musculusSlc2a36122677827122751658-10.905950648
SG00006496ENSMUSG00000023467Mus_musculusTulp27527416325277900210.905706184
SG00002363ENSMUSG00000001175Mus_musculusCalm11210143764510144801610.905253095
SG00011218ENSMUSG00000031876Mus_musculusGm457118106805247106834222-10.90509304
SG00008281ENSMUSG00000026894Mus_musculusMorn52359049783593523810.903939277
SG00002155ENSMUSG00000000088Mus_musculusCox5a9573690395738023110.899832812
SG00010831ENSMUSG00000031233Mus_musculusPgk2174034396340345554-10.899671413
SG00018807ENSMUSG00000057246Mus_musculusBC05114217345357653459767910.896895536
SG00010017ENSMUSG00000029703Mus_musculusLrwd15136598642136611944-10.896089638
SG00018499ENSMUSG00000055839Mus_musculusElob172396170723965958-10.89386643
SG00015750ENSMUSG00000043445Mus_musculusPgp17246074182460853610.890189732
 

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