SpermatogenesisOnline


Annotation of Genes/Proteins involved in Spermatogenesis



Prediction:

Greedy AUC Stepwise (GAS) is a novel algorithm, which maximize the AUC for given model. For a K-sparse problem, we assume the numbers of non-zero features should be less than K. Some authors proposed statistic learning to solve such problem such as LASSO, LARS, Compressive Sensing and so on. GAS is different from such regularity methods. When the model is given, such as SVM and logistic regression, GAS will find the best features using a special way of greedy searching.

The probability was calculated by GAS algorithm, ranging from 0 to 1. The closer it is to 1, the more possibly it functions in spermatogenesis. Without enough prior information to optimize the critical point, we suggest to use 0.5 as the cut-off. At that point, both the FPR and FNR are relative low according to our simulation study.

       
SG ID
 
 
Ensembl Gene ID Specie Gene Names
Chromosome
 
 
Start Site End Site Strand
Probability
 
 
SG00020906ENSMUSG00000071415Mus_musculusRpl23119763884197643751-10.034400375
SG00019337ENSMUSG00000060198Mus_musculusGm1135313265844182658508610.033092984
SG00012575ENSMUSG00000034994Mus_musculusEef210806393768064525210.031405724
SG00002745ENSMUSG00000003429Mus_musculusRps1175237775752379766-10.029366566
SG00019870ENSMUSG00000063328Mus_musculusGm9396312977133012977189610.028803338
SG00022627ENSMUSG00000090733Mus_musculusRps2739001659390017573-10.02844071
SG00017424ENSMUSG00000050621Mus_musculusRps27rt9114891515114891858-10.02844071
SG00011423ENSMUSG00000032231Mus_musculusAnxa29693014276933960210.02785479
SG00017699ENSMUSG00000051855Mus_musculusMest6306735473069845710.026567603
SG00014292ENSMUSG00000039221Mus_musculusRpl22l13287043582870627410.025977355
SG00017671ENSMUSG00000051723Mus_musculusRpl31-ps131310118551410118592910.023713922
SG00020924ENSMUSG00000071532Mus_musculusGm1033510142428841424335410.021148317
SG00021746ENSMUSG00000078126Mus_musculusRpl23a-ps314349838413498431110.021148317
SG00019905ENSMUSG00000063556Mus_musculusGm10132147765160877652135-10.021148317
SG00019045ENSMUSG00000058546Mus_musculusRpl23a117799443477997086-10.021148317
SG00004003ENSMUSG00000017404Mus_musculusRpl1911978880249789180610.02028709
SG00019636ENSMUSG00000062038Mus_musculusGm1010851312130713121782-10.020189936
SG00019110ENSMUSG00000058927Mus_musculusGm1005319249502272495070210.020189936
SG00019890ENSMUSG00000063457Mus_musculusRps1510797551767975685910.019538955
SG00019522ENSMUSG00000061390Mus_musculusGm786697202239272022787-10.019457665
SG00019538ENSMUSG00000061477Mus_musculusRps7122931571229320818-10.018061622
SG00021505ENSMUSG00000074516Mus_musculusGm1070997751725775220710.015122554
SG00022775ENSMUSG00000091695Mus_musculusGm1766918677220416772250510.015122554
SG00017002ENSMUSG00000048758Mus_musculusRpl29910633178510633389910.015122554
SG00020811ENSMUSG00000070896Mus_musculusRpl23a-ps11460383934603886010.013231588
SG00019123ENSMUSG00000059040Mus_musculusEno1b18482049894820803210.01313815
SG00019896ENSMUSG00000063524Mus_musculusEno1414961083014962298810.01313815
SG00004188ENSMUSG00000018593Mus_musculusSparc115520800255233582-10.013046434
SG00003603ENSMUSG00000012848Mus_musculusRps57135076391351203510.012029793
SG00015981ENSMUSG00000044424Mus_musculusGm949319236942322369481010.011042708
SG00021009ENSMUSG00000072235Mus_musculusTuba1a159878027298783982-10.010813802
SG00021073ENSMUSG00000072714Mus_musculusRpl21-ps414120600661206050610.010656035
SG00003313ENSMUSG00000007892Mus_musculusRplp196176109161762345-10.010141972
SG00019312ENSMUSG00000060019Mus_musculusGm100738109096906109097250-10.010141972
SG00019955ENSMUSG00000063875Mus_musculusRps6-ps115761680387616883510.010120618
SG00016741ENSMUSG00000047675Mus_musculusRps84116826432116828848-10.00940156
SG00019661ENSMUSG00000062152Mus_musculusRpl21-ps1484861169486165110.009028203
SG00018700ENSMUSG00000056849Mus_musculusGm1641518426006734260116110.009028203
SG00019297ENSMUSG00000059912Mus_musculusRpl21-ps6175605482656055293-10.009028203
SG00020443ENSMUSG00000068397Mus_musculusGm1024015681413816814186310.009028203
SG00020651ENSMUSG00000069986Mus_musculusGm805488139330081393767-10.009028203
SG00018828ENSMUSG00000057370Mus_musculusGm872469079497290795454-10.009028203
SG00020128ENSMUSG00000066180Mus_musculusGm101557133442916133443456-10.009028203
SG00006948ENSMUSG00000024608Mus_musculusRps1418609341646093820010.007807539
SG00021012ENSMUSG00000072255Mus_musculusRpl31-ps17125580228355802698-10.007375303
SG00020358ENSMUSG00000067870Mus_musculusRpl31-ps8159059467790595092-10.007375303
SG00019503ENSMUSG00000061242Mus_musculusGm910417836878868368836810.007314751
SG00018693ENSMUSG00000056777Mus_musculusRpl21-ps13714690529814690578010.007314751
SG00022689ENSMUSG00000091198Mus_musculusGm5218158132951481329978-10.007010773
SG00019811ENSMUSG00000062997Mus_musculusRpl3523885710038861144-10.006930828
SG00021763ENSMUSG00000078193Mus_musculusGm2000115829616915829661310.006930828
SG00020995ENSMUSG00000071866Mus_musculusPpia116315446631982010.006188763
SG00019800ENSMUSG00000062933Mus_musculusGm101239967960339679675410.006188763
SG00018937ENSMUSG00000058050Mus_musculusGm92347128158470128159191-10.006188763
SG00022730ENSMUSG00000091449Mus_musculusGm10269182084106020841504-10.006185762
SG00018911ENSMUSG00000057841Mus_musculusRpl326115755523115758765-10.00549578
SG00004774ENSMUSG00000020460Mus_musculusRps27a112944584629448109-10.005253672
SG00019093ENSMUSG00000058838Mus_musculusRps27a-ps29833032458330377010.005253672
SG00019031ENSMUSG00000058443Mus_musculusRpl10-ps395015234550153072-10.005027001
SG00003359ENSMUSG00000008682Mus_musculusRpl10X715161517151847410.005027001
SG00019698ENSMUSG00000062365Mus_musculusGm4968612718377412718463710.004995023
SG00020115ENSMUSG00000066116Mus_musculusGm1015448315105183151458-10.004180524
SG00019628ENSMUSG00000062006Mus_musculusRpl343130429749130433316-10.004180524
SG00022257ENSMUSG00000079435Mus_musculusRpl36aX13112019313112260110.003916076
SG00015809ENSMUSG00000043716Mus_musculusRpl711609137616094743-10.00382803
SG00017235ENSMUSG00000049775Mus_musculusTmsb4xX163645025163647247-10.00372042
SG00016161ENSMUSG00000045128Mus_musculusRpl18a87341862173421342-10.003593966
SG00020471ENSMUSG00000068604Mus_musculusGm822517266797052668066010.003357805
SG00013512ENSMUSG00000037563Mus_musculusRps167291356712913771510.00329036
SG00007658ENSMUSG00000025922Mus_musculusGm504515590424585904333810.002740569
SG00016014ENSMUSG00000044533Mus_musculusRps217248550612485887410.002166115
SG00021365ENSMUSG00000074034Mus_musculusGm59219115346818115347699-10.002166115
SG00018806ENSMUSG00000057244Mus_musculusGm61395130128827130129760-10.002166115
SG00021526ENSMUSG00000074580Mus_musculus4931440P22Rik36531117965333301-10.002154615
SG00020783ENSMUSG00000070778Mus_musculusRpl7a-ps87205391202053993210.001961979
SG00019748ENSMUSG00000062647Mus_musculusRpl7a2267662842676883810.001961979
SG00022555ENSMUSG00000090305Mus_musculusGm5459143188982131890633-10.001961979
SG00020465ENSMUSG00000068579Mus_musculusRpl7a-ps3153623785736238722-10.001961979
SG00020837ENSMUSG00000071052Mus_musculusRpl7a-ps5175797785057978656-10.001961979
SG00019790ENSMUSG00000062874Mus_musculusGm497896929803969298854-10.001961979
SG00019768ENSMUSG00000062758Mus_musculusGm164777138757660138758511-10.001961979
SG00022598ENSMUSG00000090544Mus_musculusGm657615269550562695601010.001905217
SG00022822ENSMUSG00000091957Mus_musculusRps2-ps108108109177108110127-10.001905217
SG00019581ENSMUSG00000061669Mus_musculusRpl34-ps21311694397311694438010.001598987
SG00020406ENSMUSG00000068240Mus_musculusGm11808439002393900742-10.001446815
SG00022519ENSMUSG00000090137Mus_musculusUba5287303216273034700-10.001446815
SG00021814ENSMUSG00000078377Mus_musculusGm429412120298311203051310.001361241
SG00018814ENSMUSG00000057262Mus_musculusGm10020155230916952309783-10.001361241
SG00018885ENSMUSG00000057657Mus_musculusRps18-ps3139853004298530587-10.001278745
SG00012539ENSMUSG00000034892Mus_musculusRps29127025870970260173-10.00125907
SG00018875ENSMUSG00000057605Mus_musculusGm6807194552479845525685-10.001092287
SG00022671ENSMUSG00000091086Mus_musculusRpl6l1011056290711056379410.001092287
SG00009951ENSMUSG00000029614Mus_musculusRpl6512165449012165925010.001092287
SG00006354ENSMUSG00000023004Mus_musculusTuba1b159876185698764996-10.000861209
SG00020847ENSMUSG00000071102Mus_musculusGm1031384734003147341032-10.000855813
SG00020553ENSMUSG00000069236Mus_musculusGm7251134990031349901320-10.000855813
SG00020577ENSMUSG00000069376Mus_musculusGm550718541439755414498210.000855813
SG00021813ENSMUSG00000078370Mus_musculusGm6316127102145971022478-10.000855813
SG00020223ENSMUSG00000066809Mus_musculusGm1018092490584824905925-10.000755974
SG00019254ENSMUSG00000059776Mus_musculusRpl13-ps63587910925891368910.000715504
 

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