SpermatogenesisOnline


Annotation of Genes/Proteins involved in Spermatogenesis



Prediction:

Greedy AUC Stepwise (GAS) is a novel algorithm, which maximize the AUC for given model. For a K-sparse problem, we assume the numbers of non-zero features should be less than K. Some authors proposed statistic learning to solve such problem such as LASSO, LARS, Compressive Sensing and so on. GAS is different from such regularity methods. When the model is given, such as SVM and logistic regression, GAS will find the best features using a special way of greedy searching.

The probability was calculated by GAS algorithm, ranging from 0 to 1. The closer it is to 1, the more possibly it functions in spermatogenesis. Without enough prior information to optimize the critical point, we suggest to use 0.5 as the cut-off. At that point, both the FPR and FNR are relative low according to our simulation study.

       
SG ID
 
 
Ensembl Gene ID Specie Gene Names
Chromosome
 
 
Start Site End Site Strand
Probability
 
 
SG00013605ENSMUSG00000037805Mus_musculusRpl10a17284654162846797710.000468911
SG00019272ENSMUSG00000059835Mus_musculusRpl13-ps314595123435951296610.000439629
SG00002264ENSMUSG00000000740Mus_musculusRpl13812562625012562914410.000439629
SG00019458ENSMUSG00000060938Mus_musculusRpl2611687150856872049110.000267637
SG00019713ENSMUSG00000062456Mus_musculusRpl9-ps6193254037532541047-10.000200781
SG00011536ENSMUSG00000032399Mus_musculusRpl49640211946402636910.000160557
SG00022387ENSMUSG00000080054Mus_musculusRpl12-ps113701473837015362-10.000100533
SG00022338ENSMUSG00000079641Mus_musculusRpl39X3462251534625397-10.0000977
SG00018821ENSMUSG00000057322Mus_musculusRpl381111452983811453364510.0000816
SG00019314ENSMUSG00000060036Mus_musculusRpl3157990821179913836-10.0000579
SG00020413ENSMUSG00000068262Mus_musculusGm587968771493087716225-10.0000579
SG00019716ENSMUSG00000062472Mus_musculusGm4945174717953347179988-10.0000542
SG00016742ENSMUSG00000047676Mus_musculusRpsa-ps103149735554149736584-10.0000501
SG00010413ENSMUSG00000030432Mus_musculusRpl2874744476474616410.0000451
SG00010869ENSMUSG00000031320Mus_musculusRps4xX9938028099384733-10.0000429
SG00013581ENSMUSG00000037742Mus_musculusEef1a197832625678336958-10.0000083
SG00008944ENSMUSG00000028081Mus_musculusRps3a138594186285946624-10.00000731
SG00019744ENSMUSG00000062611Mus_musculusRps3a2148852282188523615-10.00000731
SG00019251ENSMUSG00000059751Mus_musculusRps3a31310946077310946163410.00000731
SG00021354ENSMUSG00000073940Mus_musculusHbb-bt7110961038110962510-10.00000394
SG00017772ENSMUSG00000052305Mus_musculusHbb-bs7110975048110976610-10.00000394
SG00020645ENSMUSG00000069919Mus_musculusHba-a111321835113218446510.000000012
SG00020643ENSMUSG00000069917Mus_musculusHba-a211321964893219730110.000000012
 

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