SpermatogenesisOnline


Annotation of Genes/Proteins involved in Spermatogenesis



Prediction:

Greedy AUC Stepwise (GAS) is a novel algorithm, which maximize the AUC for given model. For a K-sparse problem, we assume the numbers of non-zero features should be less than K. Some authors proposed statistic learning to solve such problem such as LASSO, LARS, Compressive Sensing and so on. GAS is different from such regularity methods. When the model is given, such as SVM and logistic regression, GAS will find the best features using a special way of greedy searching.

The probability was calculated by GAS algorithm, ranging from 0 to 1. The closer it is to 1, the more possibly it functions in spermatogenesis. Without enough prior information to optimize the critical point, we suggest to use 0.5 as the cut-off. At that point, both the FPR and FNR are relative low according to our simulation study.

       
SG ID
 
 
Ensembl Gene ID Specie Gene Names
Chromosome
 
 
Start Site End Site Strand
Probability
 
 
SG00007761ENSMUSG00000026095Mus_musculusAsnsd115338235153409596-10.887061145
SG00013450ENSMUSG00000037437Mus_musculusAdam3282594661226059276-10.886380747
SG00003314ENSMUSG00000007907Mus_musculusCabs15884084768841056810.884649449
SG00005575ENSMUSG00000021771Mus_musculusVdac214226504912266510110.883655509
SG00013673ENSMUSG00000037971Mus_musculus1110032A03Rik95057093350576257-10.881617838
SG00011201ENSMUSG00000031839Mus_musculusHsbp1812186843812187282710.880519379
SG00016918ENSMUSG00000048416Mus_musculusMlf13671780196720392510.875194122
SG00020890ENSMUSG00000071322Mus_musculusTcp10a177528995755032310.874758793
SG00018455ENSMUSG00000055602Mus_musculusTcp10b17132539701327534710.874758793
SG00017824ENSMUSG00000052469Mus_musculusTcp10c17135474381357008910.874758793
SG00005723ENSMUSG00000022013Mus_musculusDnajc15147822602478274724-10.870135096
SG00008574ENSMUSG00000027431Mus_musculusScp2d1214464940214465015110.869130926
SG00009029ENSMUSG00000028234Mus_musculusRps20437584813762812-10.86578576
SG00004210ENSMUSG00000018677Mus_musculusSlc25a3911102264299102269260-10.86425866
SG00004522ENSMUSG00000020048Mus_musculusHsp90b1108615295486168254-10.860609654
SG00003307ENSMUSG00000007850Mus_musculusHnrnph111501904925020003010.85874773
SG00022321ENSMUSG00000079608Mus_musculusStard618706321087066072010.85843946
SG00014267ENSMUSG00000039198Mus_musculusPtchd31112169153212170520510.856951124
SG00008876ENSMUSG00000027968Mus_musculusLarp73127239872127256266-10.856721644
SG00010526ENSMUSG00000030654Mus_musculusArl6ip17125262405125273139-10.853389271
SG00006963ENSMUSG00000024654Mus_musculusAsrgl11991843589210126-10.853145483
SG00013291ENSMUSG00000037075Mus_musculusRnf13915587207845873394510.849270075
SG00005661ENSMUSG00000021917Mus_musculusSpcs1143181301231814858-10.848375061
SG00008683ENSMUSG00000027606Mus_musculusDnajc5b3194085951951086210.847717879
SG00005759ENSMUSG00000022085Mus_musculusPebp414702402277045969310.84749162
SG00010632ENSMUSG00000030815Mus_musculusPhkg2713471685413472681910.844285142
SG00011028ENSMUSG00000031553Mus_musculusAdam382578769725836324-10.843497991
SG00010062ENSMUSG00000029769Mus_musculusCcdc1366293463092937695510.843182383
SG00022866ENSMUSG00000092232Mus_musculusGm2052114555022785551697410.84310896
SG00005829ENSMUSG00000022194Mus_musculusPabpn114555113375551700610.838463479
SG00004793ENSMUSG00000020483Mus_musculusDynll2118779302787801035-10.838372022
SG00005783ENSMUSG00000022111Mus_musculusUchl31410205318410209534110.834133492
SG00005740ENSMUSG00000022039Mus_musculusAdam2146664616666696570-10.833011524
SG00019433ENSMUSG00000060715Mus_musculus1700019A02Rik15321542153244461-10.832485569
SG00018057ENSMUSG00000053624Mus_musculusGykl118528533335285532210.832103264
SG00017520ENSMUSG00000050996Mus_musculusCetn11896155229619476-10.831141753
SG00011784ENSMUSG00000032892Mus_musculusRangrf116878598668788687-10.831073249
SG00021016ENSMUSG00000072381Mus_musculusGm103553101110484101111002-10.831073249
SG00022670ENSMUSG00000091083Mus_musculusGm4535714859253614859309310.831073249
SG00003366ENSMUSG00000008822Mus_musculusAcyp1128661334886629388-10.827708535
SG00009008ENSMUSG00000028188Mus_musculusSpata13146120167146162717-10.827419115
SG00015579ENSMUSG00000042708Mus_musculusShcbp1l115527229215529970410.826849984
SG00014939ENSMUSG00000040824Mus_musculusSnrpd27197350711973808410.825763818
SG00008755ENSMUSG00000027719Mus_musculusAdad13369624493702084610.824582699
SG00004902ENSMUSG00000020650Mus_musculusBcap29123228021932319462-10.823168278
SG00005026ENSMUSG00000020849Mus_musculusYwhae11755463717557934710.822825273
SG00009506ENSMUSG00000028938Mus_musculusGalntl55246872782472611510.819341458
SG00003940ENSMUSG00000016559Mus_musculusH3f3b11115883226115889276-10.819029566
SG00003682ENSMUSG00000014294Mus_musculusNdufa2183690202036904202-10.816576254
SG00016183ENSMUSG00000045257Mus_musculusMorn217806895528069681310.811094157
SG00016133ENSMUSG00000045031Mus_musculusCetn433720667137211630-10.810904176
SG00019143ENSMUSG00000059179Mus_musculusGm899151623581116236892-10.806868824
SG00020457ENSMUSG00000068480Mus_musculusGm75517729300277293081810.806868824
SG00022842ENSMUSG00000092086Mus_musculusGm67938114537333114538936-10.806868824
SG00011647ENSMUSG00000032575Mus_musculusManf9106740643106794310-10.806222235
SG00002537ENSMUSG00000002102Mus_musculusPsmc32908941669090652610.805074315
SG00017230ENSMUSG00000049751Mus_musculusRpl36al127028371870285070-10.804911788
SG00020770ENSMUSG00000070708Mus_musculusGtsf1l2162912767162913590-10.804135551
SG00011549ENSMUSG00000032412Mus_musculusAtp1b399623309996264766-10.802937921
SG00006097ENSMUSG00000022603Mus_musculusMroh4157443645974466691-10.80248336
SG00003653ENSMUSG00000013822Mus_musculusElof192191743321921592-10.801319909
SG00012206ENSMUSG00000034024Mus_musculusCct210116488054116500870-10.800549304
SG00015722ENSMUSG00000043319Mus_musculusCox8c1210413751610413874410.800211211
SG00006908ENSMUSG00000024532Mus_musculus1700034E13Rik18528058635282338710.799577486
SG00019688ENSMUSG00000062270Mus_musculusMorf4l198998650990009658-10.799506904
SG00018816ENSMUSG00000057278Mus_musculusSnrpg6863215348632889610.799027138
SG00005438ENSMUSG00000021537Mus_musculusCetn313819222918193614210.797119963
SG00020978ENSMUSG00000071726Mus_musculusGm5941X897352888973602010.796961122
SG00020973ENSMUSG00000071721Mus_musculus1700010D01RikX9292792992928657-10.796961122
SG00016294ENSMUSG00000045690Mus_musculusWdr89127673251076770489-10.796298512
SG00013145ENSMUSG00000036743Mus_musculusPsma818148646601492080810.795994198
SG00011420ENSMUSG00000032221Mus_musculusMns19722863367230638110.794356062
SG00004515ENSMUSG00000020029Mus_musculusNudt4109500964195026801-10.794228435
SG00003421ENSMUSG00000009549Mus_musculusSrp142118301586118305447-10.793591917
SG00006689ENSMUSG00000024154Mus_musculusGtf2a1l17890680008911449210.79306021
SG00015388ENSMUSG00000042200Mus_musculusCdrt411627646956280659710.791565679
SG00022405ENSMUSG00000081984Mus_musculusDnajb319010130790102323-10.791360973
SG00004068ENSMUSG00000017832Mus_musculusHspb91110057516410057588910.785802481
SG00006528ENSMUSG00000023873Mus_musculus1700010I14Rik179181198920118410.785003287
SG00010190ENSMUSG00000030086Mus_musculusChchd668933314089545646-10.782533186
SG00007194ENSMUSG00000025035Mus_musculusArl3194660559946647575-10.782520253
SG00017265ENSMUSG00000049916Mus_musculus2610318N02Rik161711349217125199-10.781454019
SG00022819ENSMUSG00000091933Mus_musculusGm88575109477301095259010.78063535
SG00022813ENSMUSG00000091903Mus_musculusGm64605108660721104494810.78063535
SG00020351ENSMUSG00000067848Mus_musculus4933402N22Rik5115949561159978410.78063535
SG00022725ENSMUSG00000091422Mus_musculusGm64555118467101192282110.78063535
SG00012331ENSMUSG00000034349Mus_musculusSmc43688086606883854510.780375341
SG00016382ENSMUSG00000046173Mus_musculusPabpc61798593629862569-10.775919875
SG00018620ENSMUSG00000056436Mus_musculusCyct27619199976198507-10.77545705
SG00004102ENSMUSG00000018286Mus_musculusPsmb611703388697034136010.772715887
SG00017306ENSMUSG00000050107Mus_musculusHaspin117294898772951796-10.770717212
SG00003685ENSMUSG00000014313Mus_musculusCox6c153585564135868001-10.7676323
SG00022606ENSMUSG00000090634Mus_musculusGm812614439371824394533210.767299245
SG00022736ENSMUSG00000091477Mus_musculusGm579914441212414412887810.767299245
SG00011490ENSMUSG00000032330Mus_musculusCox7a297960304879607660-10.767134335
SG00020064ENSMUSG00000064307Mus_musculusLrrc517109061498109082409-10.76577628
SG00020841ENSMUSG00000071072Mus_musculusPtges31012749601012751432810.765768683
SG00015257ENSMUSG00000041840Mus_musculusHaus1187799630678006519-10.76541252
SG00009065ENSMUSG00000028287Mus_musculus1700009N14Rik4393973283939880910.765004496
SG00011566ENSMUSG00000032437Mus_musculusStt3b9115151725115219539-10.76495486
 

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