SpermatogenesisOnline


Annotation of Genes/Proteins involved in Spermatogenesis



Prediction:

Greedy AUC Stepwise (GAS) is a novel algorithm, which maximize the AUC for given model. For a K-sparse problem, we assume the numbers of non-zero features should be less than K. Some authors proposed statistic learning to solve such problem such as LASSO, LARS, Compressive Sensing and so on. GAS is different from such regularity methods. When the model is given, such as SVM and logistic regression, GAS will find the best features using a special way of greedy searching.

The probability was calculated by GAS algorithm, ranging from 0 to 1. The closer it is to 1, the more possibly it functions in spermatogenesis. Without enough prior information to optimize the critical point, we suggest to use 0.5 as the cut-off. At that point, both the FPR and FNR are relative low according to our simulation study.

       
SG ID
 
 
Ensembl Gene ID Specie Gene Names
Chromosome
 
 
Start Site End Site Strand
Probability
 
 
SG00018031ENSMUSG00000053453Mus_musculusThoc7141478152814793739-10.681558215
SG00010491ENSMUSG00000030591Mus_musculusPsmd872995920729965692-10.676429294
SG00009402ENSMUSG00000028773Mus_musculusFabp3412998583912999270710.676285207
SG00014929ENSMUSG00000040794Mus_musculusC1qtnf42907259439073068310.676054579
SG00006275ENSMUSG00000022890Mus_musculusAtp5j168482811184835870-10.6743726
SG00019225ENSMUSG00000059585Mus_musculusUbe2nl76869412968694587-10.673291852
SG00020440ENSMUSG00000068391Mus_musculusChrac115729208227292798410.673237597
SG00018701ENSMUSG00000056851Mus_musculusPcbp21510230106310233049010.672916165
SG00010116ENSMUSG00000029867Mus_musculus1700034O15Rik6416344304163571610.672280496
SG00005553ENSMUSG00000021737Mus_musculusPsmd6141494469814953498-10.672011612
SG00007049ENSMUSG00000024805Mus_musculusPcgf519364535573653068210.671902941
SG00015247ENSMUSG00000041809Mus_musculusEfhc11209417072098091910.671793485
SG00009313ENSMUSG00000028648Mus_musculusNdufs54123389953123395445-10.671238544
SG00014150ENSMUSG00000038936Mus_musculusSccpdh118159834118161732010.670136071
SG00003056ENSMUSG00000005779Mus_musculusPsmb439468801594690883-10.668947715
SG00009970ENSMUSG00000029642Mus_musculusPolr1d514788862614792293710.668788123
SG00016356ENSMUSG00000045996Mus_musculusPolr2k15361037723610676710.668436088
SG00009050ENSMUSG00000028264Mus_musculusSpaca143411184934137166-10.668379963
SG00016157ENSMUSG00000045107Mus_musculusSaysd1142089486820902394-10.667593651
SG00013298ENSMUSG00000037101Mus_musculusTtc298807371968091822510.666675574
SG00002847ENSMUSG00000004285Mus_musculusAtp6v1f6294177182942051210.665593839
SG00008581ENSMUSG00000027442Mus_musculusCst8214862452114863133110.664968425
SG00006865ENSMUSG00000024474Mus_musculusIk18369043103691729310.662289509
SG00019162ENSMUSG00000059278Mus_musculusNaa3811692089896921018210.660395671
SG00003308ENSMUSG00000007867Mus_musculusIft4312874235138750340810.659597312
SG00014433ENSMUSG00000039630Mus_musculusHnrnpu1180253205180267928-10.658919752
SG00011253ENSMUSG00000031927Mus_musculus1700012B09Rik91456264414575474-10.65871848
SG00013072ENSMUSG00000036533Mus_musculusCdc42ep3177973336579754431-10.658345907
SG00004534ENSMUSG00000020069Mus_musculusHnrnph3106247741262486965-10.657832064
SG00003394ENSMUSG00000009093Mus_musculusGstt4107527768875285288-10.657725019
SG00003340ENSMUSG00000008348Mus_musculusUbc5125866335125870572-10.655763448
SG00011182ENSMUSG00000031818Mus_musculusCox4i1812319219012319810910.655723698
SG00003715ENSMUSG00000014529Mus_musculusTmbim753657004368032510.654787396
SG00006457ENSMUSG00000023257Mus_musculusCypt1X160999951610081510.654686069
SG00017431ENSMUSG00000050645Mus_musculusDefb192152401822152406048-10.653716584
SG00003943ENSMUSG00000016626Mus_musculusNlrp14711431050411434161610.652622337
SG00006397ENSMUSG00000023047Mus_musculusAmhr21510227579810228506110.650565061
SG00011207ENSMUSG00000031848Mus_musculusLsm48731971477320265110.650465399
SG00006691ENSMUSG00000024158Mus_musculusHagh17249770882500139510.65044668
SG00004751ENSMUSG00000020415Mus_musculusPttg1114323375243239753-10.649525346
SG00013353ENSMUSG00000037236Mus_musculusMatr318357218123575169910.648608552
SG00009095ENSMUSG00000028345Mus_musculusTex1044844373048486331-10.648048737
SG00014177ENSMUSG00000039016Mus_musculusTimm8b9504120065041342510.646501857
SG00011175ENSMUSG00000031805Mus_musculusJak38742001957421447410.64647269
SG00018205ENSMUSG00000054428Mus_musculusAtpif14132086470132089574-10.645000572
SG00007135ENSMUSG00000024943Mus_musculusSmc5192328322423348367-10.644765672
SG00004296ENSMUSG00000019139Mus_musculusIsyna18731183807312118710.644159569
SG00013009ENSMUSG00000036309Mus_musculusSkp1a11520454975206036010.642524105
SG00002237ENSMUSG00000000563Mus_musculusAtp5f13105745616105763017-10.640125169
SG00022645ENSMUSG00000090862Mus_musculusRps137123475021123477704-10.638976087
SG00005500ENSMUSG00000021660Mus_musculusBtf3139907985199086961-10.638931911
SG00008965ENSMUSG00000028124Mus_musculusGclm312194847512197290210.638148085
SG00005480ENSMUSG00000021610Mus_musculusClptm1l13737415547375805110.63769545
SG00022581ENSMUSG00000090457Mus_musculus4930571K23Rik713251237513251452710.637695411
SG00021261ENSMUSG00000073616Mus_musculusCops919453372294538562-10.637640985
SG00016735ENSMUSG00000047654Mus_musculusTssk68724260837242741510.637579051
SG00005299ENSMUSG00000021273Mus_musculusFdft1146376399063796630-10.637528081
SG00004481ENSMUSG00000019945Mus_musculus1700040L02Rik106789370168004644-10.637033413
SG00010175ENSMUSG00000030062Mus_musculusRpn16880344678805529810.636244447
SG00012519ENSMUSG00000034842Mus_musculusArt35927608539284365410.635966112
SG00017942ENSMUSG00000052926Mus_musculusRnaseh2a88748050987493666-10.634714336
SG00016592ENSMUSG00000047025Mus_musculusCcer110971556939715756010.63448548
SG00005965ENSMUSG00000022388Mus_musculusTtll8158872106388784848-10.634417628
SG00013164ENSMUSG00000036781Mus_musculusRps27l9667938936679732310.631431036
SG00004559ENSMUSG00000020102Mus_musculusSlc16a710124663520124766019-10.629809463
SG00008300ENSMUSG00000026931Mus_musculus1700019N19Rik195886029358868951-10.629603683
SG00012722ENSMUSG00000035399Mus_musculusOser12163231558163250433-10.628884122
SG00013633ENSMUSG00000037894Mus_musculusH2afz313752745113752988610.625858341
SG00020905ENSMUSG00000071414Mus_musculusGm6736121346146513462815-10.625801995
SG00002435ENSMUSG00000001642Mus_musculusAkr1b363425393434267497-10.625801995
SG00011847ENSMUSG00000033053Mus_musculus1700028P14Rik192363325023727302-10.625336907
SG00011417ENSMUSG00000032218Mus_musculusCcnb297025549670269361-10.625292658
SG00018767ENSMUSG00000057132Mus_musculusRpgrip114527305785278098210.624588048
SG00012376ENSMUSG00000034467Mus_musculusDynlrb2811902891511903979610.62426096
SG00005442ENSMUSG00000021545Mus_musculus1700067P10Rik17482265824822787010.623949107
SG00002891ENSMUSG00000004633Mus_musculusChn26539895485425180410.623882988
SG00013369ENSMUSG00000037278Mus_musculusTmem97117835531978364279-10.623370135
SG00009304ENSMUSG00000028639Mus_musculusYbx14118950586118967209-10.623084659
SG00005590ENSMUSG00000021785Mus_musculusNgly114170817941714444010.62306871
SG00002281ENSMUSG00000000811Mus_musculusTxnrd36895939828962552310.622965391
SG00019782ENSMUSG00000062859Mus_musculusTcp11172820369228217584-10.6218564
SG00004391ENSMUSG00000019795Mus_musculusPcmt11073491717400934-10.621856392
SG00005496ENSMUSG00000021643Mus_musculusSerf11310087795210088452610.62161483
SG00020499ENSMUSG00000068823Mus_musculusCsde1310282446910286211210.621470184
SG00019483ENSMUSG00000061104Mus_musculusSap18b8983492549835003310.619143632
SG00005474ENSMUSG00000021598Mus_musculusMed1013699487606995497210.619129934
SG00003896ENSMUSG00000015980Mus_musculusLrrc27714639888714642887810.618473108
SG00012168ENSMUSG00000033949Mus_musculusTrim36184632495646372261-10.615969613
SG00008842ENSMUSG00000027905Mus_musculusDdx203105481178105490492-10.615295765
SG00003924ENSMUSG00000016427Mus_musculusNdufa1X3472758334731158-10.615283613
SG00012155ENSMUSG00000033904Mus_musculusCcp110712585606612588053810.61394931
SG00002266ENSMUSG00000000751Mus_musculusRpa1117511166875161826-10.613359076
SG00008022ENSMUSG00000026495Mus_musculusEfcab2118033601218041337810.612670298
SG00013623ENSMUSG00000037852Mus_musculusCpe86707135567171837-10.61230791
SG00020675ENSMUSG00000070319Mus_musculusEif3g92069879620703044-10.612141678
SG00003258ENSMUSG00000007050Mus_musculusLsm217351188073512283610.611989042
SG00006486ENSMUSG00000023403Mus_musculusStk316493456034941950010.610694986
SG00015584ENSMUSG00000042726Mus_musculusTrafd15121821734121835641-10.609314438
SG00013256ENSMUSG00000036992Mus_musculusNxt1214849833714850176310.608328541
SG00008828ENSMUSG00000027886Mus_musculus1700013F07Rik310833706810834764110.608122392
 

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