SNVfilter web server

Neutral Damaging

Chromosome	Start	End	Ref	Alt	rsID	SNVfilter Prediction	Damaging Probability	1000Genome Frequency	SIFT Prediction	Polyphen HDIV Prediction	Polyphen HVAR Prediction	FATHMM Prediction	Function	Gene Symbol	Transcript ID	Exon Number	mRNA Pos	Codon Num	Residue Change	OMIM	MGI	Cell Lines	Tissue
chr1	1017170	1017170	C	G	rs3766193	N	2.00732529265e-07	0.575479					downstream	C1orf159								HEK-293	testis
chr1	1103690	1103704	TCCCCCACCCAACCT	TCACCCCCACCCAACCT		N	0.00434041535482						upstream,downstream	MIR429;MIR200A
chr1	11072579	11072579	T	C	rs968545	N	0.0391050130129	0.970048					upstream	TARDBP						FRONTOTEMPORAL DEMENTIA WITH TDP43 INCLUSIONS, TARDBP-RELATED	TAR DNA binding protein	HeLa	lymph node
chr1	11086097	11086099	ATG	ATTG		N	0.393596440554						downstream	MASP2 TARDBP
chr1	11107439	11107439	G	T	rs7548659	N	4.87445986352e-11	0.574281					upstream	MASP2						MASP2 DEFICIENCY	mannan-binding lectin serine peptidase 2	Hep-G2	liver
chr1	11126569	11126569	C	A	rs2791659	N	8.98268410765e-08	0.60603					downstream	EXOSC10							exosome component 10	HEK-293	skin
chr1	1115210	1115213	GGTG	AGTT		N	1.95823145077e-06						5-UTR	TTLL10	NM_153254						tubulin tyrosine ligase-like family, member 10	SCLC-21H	testis
chr1	115881055	115881055	G	A	rs11102930	N	1.54829080112e-10	0.468051					upstream	NGF							nerve growth factor	U-2197	ovary
chr1	116916645	116916647	CTC	CC		N	0.100130960345						5-UTR	ATP1A1	NM_001160233						ATPase, Na+/K+ transporting, alpha 1 polypeptide	SK-MEL-30	kidney
chr1	11900437	11900437	T	C	rs198412	N	0.00165945873596	0.120008					ncRNA	NPPA-AS1
chr1	11906068	11906068	A	G	rs5065	N	0.486632794142	0.179113					stoploss	NPPA	NM_006172	3	454	152	X=>R			SCLC-21H	heart muscle
chr1	11918927	11918949	TCTGCTGCTGCTGCTGCTGCTGC	TCTGCTGCTGCTGCTGCTGCTGCTGC		N	0.191035091877						5-UTR	NPPB	NM_002521						natriuretic peptide type B	CACO-2	heart muscle
chr1	11940483	11940483	C	T	rs4846068	N	5.36796128381e-12	0.652955					intergenic
chr1	120088934	120088934	G	A	rs1983726	N	4.35930530784e-07	0.835064					intergenic
chr1	12079257	12079257	T	C	rs4846087	N	0.0116150584072	1					upstream	MIIP							migration and invasion inhibitory protein	HDLM-2	bone marrow
chr1	12786417	12786420	AGGC	GGGT		N	0.000153514076374						3-UTR	AADACL3	NM_001103170						arylacetamide deacetylase-like 3	BEWO	placenta
chr1	13736780	13736780	G	C	rs80222828	N	0.00111686997116						upstream	PRAMEF20								SCLC-21H	testis
chr1	145510376	145510376	A	G	rs1058534	N	0.000744427554309	0.797125					ncRNA	GNRHR2
chr1	146892465	146892465	A	G	rs2353970	N	9.2265679541e-09	0.970847					ncRNA	LINC00624
chr1	148756432	148756432	C	A	rs75058536	N	0.449501574039						ncRNA	NBPF25P
chr1	149224410	149224410	C	A	rs7551713	N	0.486632794142	0.464657					intergenic
chr1	152189055	152189055	G	C	rs4845749	N	1.01979001632e-10		N	N	N	N	nonsynonymous SNV	HRNR	NM_001009931	3	5050	1684	R=>G		hornerin	NTERA-2	skin
chr1	152193544	152193547	ATGG	ATGA		N	0.00095346767921						nonframeshift substitution	HRNR	NM_001009931	3	558				hornerin	NTERA-2	skin
chr1	152193544	152193547	ATGG	GTGA		N	0.00095346767921						nonframeshift substitution	HRNR	NM_001009931	3	558				hornerin	NTERA-2	skin
chr1	153589205	153589222	GTCTCTCTCTCTCTCTCA	GTCTCTCTCTCTCTCTCTCTCA		N	0.406692832708						upstream	S100A14								SK-BR-3	esophagus
chr1	1551927	1551927	T	C	rs7418389	N	0.00154270371422	0.477037	N	N	N	N	nonsynonymous SNV	MIB2	NM_001170687 NM_080875 NM_001170686 NM_001170688	2,2,2,2	214,214,214,214	72,72,72,72	F=>L,F=>L,F=>L,F=>L		mindbomb homolog 2 (Drosophila)	HeLa	spleen
chr1	15573758	15573758	G	A	rs1780597	N	0.486632794142	0.199081					upstream	FHAD1							forkhead-associated (FHA) phosphopeptide binding domain 1	HMC-1	testis
chr1	155947875	155947875	A	G	rs928596	N	0.00150335382205	0.448882					5-UTR	ARHGEF2	NM_004723						rho/rac guanine nucleotide exchange factor (GEF) 2	SK-MEL-30	lung
chr1	15616139	15616139	G	A	rs486557	N	7.25154586689e-06	0.208067	N	N	N	N	nonsynonymous SNV	FHAD1	NM_052929	4	545	182	R=>H		forkhead-associated (FHA) phosphopeptide binding domain 1	HMC-1	testis
chr1	1566068	1566068	A	G	rs28730454	N	7.91151760495e-05						downstream	MIB2							mindbomb homolog 2 (Drosophila)	HeLa	spleen
chr1	15852704	15852704	T	C	rs4263990	N	0.000125806662254	0.584465					upstream	DNAJC16							DnaJ (Hsp40) homolog, subfamily C, member 16	K-562	kidney
chr1	15909895	15909895	A	G	rs6429758	N	1.78232753001e-07	0.612819					intronic	AGMAT								Hep-G2	kidney
chr1	159842088	159842088	T	A	rs2494518	N	3.95285830734e-08	0.798522					downstream	CFAP45
chr1	1608229	1608229	C	T	rs61776790	N	0.000815179548226	0.264577					5-UTR	SLC35E2B	NM_001110781 NM_001290264							SCLC-21H	ovary
chr1	16259813	16259813	A	G	rs848210	N	3.81332192489e-08	0.648962	N	N	N	N	nonsynonymous SNV	SPEN	NM_015001	11	7078	2360	N=>D		SPEN homolog, transcriptional regulator (Drosophila)	HEK-293	ovary
chr1	16389026	16389026	T	C	rs2863458	N	1.63605345733e-05	0.298323	D	P	P	N	nonsynonymous SNV	FAM131C	NM_182623	3	142	48	K=>E		family with sequence similarity 131, member C	A-549	kidney
chr1	16464673	16464673	G	A	rs2230597	N	2.80542855613e-09	0.349441					nonsynonymous SNV	EPHA2	NM_004431	5	987	329	Q=>H		Eph receptor A2	PC-3	esophagus
chr1	16475123	16475126	CAGC	TAGT		N	0.00070842099376						nonframeshift substitution	EPHA2	NM_004431	3	570				Eph receptor A2	PC-3	esophagus
chr1	16776743	16776804	GTTTTTTTTTGTTTTGTTTTGTTTTTTGTTTTGTTTTGTTGTTTTTTTTTTTTAGGCATTTC	GTTTTTTTTTTGTTTTGTTTTGTTTTTTGTTTTGTTTTGTTGTTTTTTTTTTTTAGGCATTTT		N	0.486632794142						intronic	NECAP2							NECAP endocytosis associated 2	Karpas-707	lymph node
chr1	168180219	168180219	G	T	rs10737540	N	4.24588542955e-05	0.494609					intergenic
chr1	169072936	169072936	C	G	rs932393	N	4.87139401314e-18	0.88119					upstream	LOC101928596
chr1	17054546	17054546	T	C	rs2773193	N	0.486632794142						intergenic
chr1	17097722	17097722	T	C	rs28469336	N	0.000340020022122						intergenic
chr1	17392980	17392980	T	C	rs12134582	N	4.20492979174e-05	0.453075					downstream	PADI2							peptidyl arginine deiminase, type II	SK-BR-3	colon
chr1	179783922	179783922	T	A	rs2236589	N	0.170027598739	0.511981					3-UTR	FAM163A	NM_173509						family with sequence similarity 163, member A	SH-SY5Y	testis
chr1	18023997	18023999	GCA	GCCA		D	0.900117456913						3-UTR	ARHGEF10L	NM_018125 NM_001011722 NM_001319837 NM_001328124 NM_001319838						Rho guanine nucleotide exchange factor (GEF) 10-like	Hep-G2	skin
chr1	181151556	181151556	T	C	rs7538429	N	1.20009667626e-06	0.273363					downstream	LOC101928973
chr1	1853615	1853617	TCT	TCTGACT		N	0.107629150152						3-UTR	CFAP74	NM_001304360
chr1	197876533	197876533	C	A	rs1546244	N	7.62153431424e-05	0.973442					downstream	C1orf53								SCLC-21H	liver
chr1	203322451	203322462	TAAAAAAACACT	TAAAAAAAACACT		N	0.453100085258						intergenic
chr1	2065339	2065343	AGGGG	GGGGC		N	1.11052067542e-09						intronic	PRKCZ							protein kinase C, zeta	Hep-G2	cerebral cortex
chr1	20915172	20915172	C	T	rs532545	N	3.22052619595e-05	0.186102					upstream	CDA							cytidine deaminase	SiHa	bone marrow
chr1	20915589	20915595	TCCCGCT	TCCGCT		N	0.486632794142						5-UTR	CDA	NM_001785						cytidine deaminase	SiHa	bone marrow
chr1	20945252	20945259	GCCCCCTG	GCCCCCCTG		D	0.985510826111						3-UTR	CDA	NM_001785						cytidine deaminase	SiHa	bone marrow
chr1	209848432	209848432	G	A	rs932374	N	0.00264228601009	0.602835					ncRNA	LOC101930114
chr1	2130820	2130820	G	A		N	0.486632794142	0.00139776					5-UTR	FAAP20	NM_001282670
chr1	21904206	21904206	C	T	rs1697405	N	1.72366668494e-07	0.336661					3-UTR	ALPL	NM_000478 NM_001127501 NM_001177520					ODONTOHYPOPHOSPHATASIA	alkaline phosphatase, liver/bone/kidney	SCLC-21H	kidney
chr1	21921990	21921990	C	G	rs829393	N	1.6195947361e-11	0.746006					downstream	RAP1GAP							Rap1 GTPase-activating protein	A-549	thyroid gland
chr1	21929456	21929468	GCCCCCCCCACAT	GCCCCCCCACAT		D	0.722365140915						intronic	RAP1GAP							Rap1 GTPase-activating protein	A-549	thyroid gland
chr1	225653090	225653090	T	C	rs4653641	N	7.91893762653e-05	0.970447					intergenic
chr1	225991176	225991176	T	G	rs4653685	N	1.85773126304e-06	0.51877					intergenic
chr1	225997029	225997029	T	C	rs10737419	N	3.45252182399e-08	0.690895					upstream	EPHX1							epoxide hydrolase 1, microsomal	SiHa	liver
chr1	225997741	225997741	C	A	rs12741681	N	0.486632794142	0.620208					upstream	EPHX1							epoxide hydrolase 1, microsomal	SiHa	liver
chr1	226123389	226123389	G	T	rs1223234	N	7.02398361696e-09	0.977037					downstream	LEFTY2								RPMI-8226	uterus
chr1	226818414	226818414	A	G	rs1288465	N	0.00053900340572	0.539736					downstream	ITPKB							inositol 1,4,5-trisphosphate 3-kinase B	SK-MEL-30	adipose tissue
chr1	227622364	227622364	T	C	rs10916145	N	1.30013711441e-06	0.452875					intergenic
chr1	22832743	22832743	A	T	rs209732	N	5.7322395719e-09	0.799121					intronic	ZBTB40							zinc finger and BTB domain containing 40	K-562	lymph node
chr1	22835677	22835677	A	G	rs209729	N	8.34492652757e-09	0.822484	N	N	N	N	nonsynonymous SNV	ZBTB40	NM_001083621 NM_014870	10,9	1784,1784	595,595	Y=>C,Y=>C		zinc finger and BTB domain containing 40	K-562	lymph node
chr1	228366526	228366526	A	G	rs6667424	N	0.00646077143028	0.946885					3-UTR	IBA57	NM_001010867 NM_001310327						IBA57, iron-sulfur cluster assembly homolog (S. cerevisiae)	SK-BR-3	testis
chr1	22915753	22915753	T	C	rs606002	N	1.72690892697e-08	0.481829	N	N	N	N	nonsynonymous SNV	EPHA8	NM_001006943	5	1369	457	S=>P		Eph receptor A8	SCLC-21H	adrenal gland
chr1	22915978	22915978	A	T	rs521570	N	2.7287796911e-08	0.479832					3-UTR	EPHA8	NM_001006943						Eph receptor A8	SCLC-21H	adrenal gland
chr1	22928265	22928265	A	G	rs209700	N	1.08590150205e-08	0.626997					3-UTR	EPHA8	NM_020526						Eph receptor A8	SCLC-21H	adrenal gland
chr1	2439599	2439599	C	A	rs2494621	N	7.29462268367e-10	0.804712					downstream	PANK4							pantothenate kinase 4	SCLC-21H	spleen
chr1	24434595	24434595	T	C	rs11249170	N	7.8093751199e-07	0.702676					intronic	MYOM3							myomesin family, member 3	Hep-G2	heart muscle
chr1	245318385	245318385	G	C	rs4658708	N	0.0607436336577	0.938698					5-UTR	KIF26B	NM_018012						kinesin family member 26B	SH-SY5Y	placenta
chr1	246971018	246971018	C	G	rs7517757	N	2.1761297625e-11	0.974042					intergenic
chr1	247615887	247615887	T	C	rs6665526	N	1.25912791304e-07	0.757987					upstream	OR2B11								THP-1	bone marrow
chr1	2477844	2477844	C	G		N	0.316145092249	0.00299521					intergenic
chr1	247836494	247836494	T	A	rs28607552	N	8.19372780825e-06	0.329473					upstream	OR13G1								HMC-1	testis
chr1	248437247	248437254	GCCCTAAC	GC		N	0.0285982750356						upstream	OR2T33								PC-3	bone marrow
chr1	248458676	248458676	T	C	rs6678138	N	5.61910237593e-05		N	N	N	N	nonsynonymous SNV	OR2T12	NM_001004692	1	205	69	M=>V			THP-1	adipose tissue
chr1	25570081	25570081	T	C	rs1043879	N	0.000547468836885	0.107827	D	N	N	N	exonic	RSRP1
chr1	26846804	26846804	T	C	rs1975799	N	9.49256218519e-07	0.9377					intergenic
chr1	28261658	28261660	TGA	TGGA		N	0.19896300137						5-UTR	SMPDL3B	NM_001009568 NM_001304579 NM_014474						sphingomyelin phosphodiesterase, acid-like 3B	BEWO	colon
chr1	29474134	29474134	A	C	rs2452782	N	3.15733528732e-12	0.720647					downstream	SRSF4								HEL	bone marrow
chr1	29562070	29562070	A	G	rs2503006	N	2.40984491029e-07	0.717851					upstream	PTPRU							protein tyrosine phosphatase, receptor type, U	BEWO	placenta
chr1	31345747	31345747	C	T	rs3820088	N	0.000274082820397	0.229633					3-UTR	SDC3	NM_014654						syndecan 3	WM-115	cerebral cortex
chr1	31732390	31732390	G	A	rs6425725	N	6.70420099644e-12	0.98742					downstream	SNRNP40							small nuclear ribonucleoprotein 40 (U5)	NTERA-2	lymph node
chr1	32083193	32083193	G	C	rs11807225	N	2.97923984744e-13	0.484824					upstream	HCRTR1							hypocretin (orexin) receptor 1	TIME	adrenal gland
chr1	32083273	32083273	G	C	rs12740754	N	4.0748044587e-16	0.35643					upstream	HCRTR1							hypocretin (orexin) receptor 1	TIME	adrenal gland
chr1	32084904	32084904	C	T	rs1056526	N	3.07621768059e-08	0.352835					synonymous SNV	HCRTR1	NM_001525	3	111	37	R=>R		hypocretin (orexin) receptor 1	TIME	adrenal gland
chr1	32092525	32092525	A	G	rs2271933	N	2.1960584462e-09	0.439696	N	N	N	N	nonsynonymous SNV	HCRTR1	NM_001525	9	1222	408	I=>V		hypocretin (orexin) receptor 1	TIME	adrenal gland
chr1	32092918	32092920	TTA	TTCCTA		N	1.51383085267e-06						3-UTR	HCRTR1	NM_001525						hypocretin (orexin) receptor 1	TIME	adrenal gland
chr1	32100551	32100559	GAAAAAGAC	GAAAAGAC		D	0.809151649475						intronic	PEF1								HEK-293	thyroid gland
chr1	32165495	32165495	G	T	rs2228552	N	1.2376537295e-10	0.427316	N	D	P	N	nonsynonymous SNV	COL16A1	NM_001856	4	185	62	T=>K		collagen, type XVI, alpha 1	U-2197	ovary
chr1	3352503	3352503	G	C	rs1537404	N	9.81046577309e-10	0.88738					3-UTR	PRDM16	NM_199454 NM_022114						PR domain containing 16	HEK-293	stomach
chr1	33721556	33721556	G	T	rs12130266	N	1.52186263591e-08	0.951877					upstream	ZNF362								SH-SY5Y	adipose tissue
chr1	3385250	3385250	C	A	rs1417897	N	3.14934879952e-07	0.515375					intronic	ARHGEF16							Rho guanine nucleotide exchange factor (GEF) 16	CAPAN-2	duodenum
chr1	35260929	35260929	G	A	rs3543	N	5.90913806775e-09	0.655551					3-UTR	GJA4	NM_002060						gap junction protein, alpha 4	EFO-21	placenta
chr1	3527944	3527944	C	G	rs10797402	N	2.97182769929e-13	0.936701					5-UTR	MEGF6	NM_001409						multiple EGF-like-domains 6	U-2197	skin
chr1	3528841	3528841	T	C	rs2794326	N	2.99431195171e-14	0.9375					upstream	MEGF6							multiple EGF-like-domains 6	U-2197	skin
chr1	35319681	35319681	T	C	rs6697614	N	0.00193813024089	0.23722					3-UTR	SMIM12	NM_001164824 NM_001164825 NM_001320261 NM_138428							HL-60	adrenal gland
chr1	3539082	3539082	A	G	rs10909989	N	6.9593202312e-09	0.78135					intergenic
chr1	36615669	36615669	G	A	rs2231304	N	0.0935528576374	0.996006					intronic	TRAPPC3								HEK-293	thyroid gland
chr1	37959450	37959450	T	C	rs215210	N	8.52548623698e-07	0.730431					3-UTR	MEAF6	NM_001270875 NM_022756							SCLC-21H	prostate
chr1	38006359	38006359	A	G	rs2174769	N	2.2111078124e-06	0.722045					intronic	SNIP1							Smad nuclear interacting protein 1	NTERA-2	bone marrow
chr1	38022452	38022452	C	A	rs2273014	N	0.486632794142	0.400559					upstream	DNALI1								SH-SY5Y	testis
chr1	38030696	38030696	T	C	rs6619	N	2.78468951365e-06	0.410942					3-UTR	DNALI1	NM_003462							SH-SY5Y	testis
chr1	38049373	38049373	C	T	rs3753372	N	0.00120176083874	0.411142					intronic	GNL2							guanine nucleotide binding protein-like 2 (nucleolar)	U-698	bone marrow
chr1	38052867	38052911	CAAAAAAAAAAAAACAAAAACAAAGAAGCAAAAAAAAAAATGTAC	CAAAAAAAAAAAAAACAAAAACAAAGAAGCAAAAAAAAAAATGTAC		D	0.745311737061						intronic	GNL2							guanine nucleotide binding protein-like 2 (nucleolar)	U-698	bone marrow
chr1	38078300	38078300	A	G	rs4652964	N	1.65923438544e-06	0.46865					3-UTR	RSPO1	NM_001038633 NM_001242908 NM_001242909 NM_001242910						R-spondin homolog (Xenopus laevis)	HeLa	uterus
chr1	39734598	39734598	G	C	rs16826022	N	1.22349769205e-11	0.0974441	D			D	intronic	MACF1							microtubule-actin crosslinking factor 1	TIME	lung
chr1	43424519	43424519	T	G	rs11537640	N	0.486632794142	0.232029					5-UTR	SLC2A1	NM_006516						solute carrier family 2 (facilitated glucose transporter), member 1	CACO-2	placenta
chr1	43916642	43916642	T	C	rs6954	N	1.32428930044e-08	0.584864					3-UTR	SZT2	NM_015284						seizure threshold 2	THP-1	skin
chr1	43919413	43919413	A	G	rs6692611	N	0.0606710873544	0.595847	N	N	N	N	nonsynonymous SNV	HYI	NM_031207 NM_001243526 NM_001190880	1,1,1	52,52,52	18,18,18	S=>P,S=>P,S=>P		hydroxypyruvate isomerase homolog (E. coli)	CAPAN-2	ovary
chr1	44125962	44125970	CAAAAAGGT	CAAAAGGT		D	0.878279864788						nonframeshift substitution	KDM4A	NM_014663	4	315				lysine (K)-specific demethylase 4A	THP-1	duodenum
chr1	44584337	44584346	GTGGCTGGCT	GTGGCT		N	0.00494333729148						upstream	KLF17							Kruppel-like factor 17	U-138-MG	testis
chr1	45101478	45101478	T	C	rs2236219	N	0.000153410481289	0.376398					intronic	RNF220							ring finger protein 220	NTERA-2	cerebral cortex
chr1	45467244	45467244	G	T	rs6690606	N	1.12761405546e-07	0.983227					downstream	HECTD3							HECT domain containing 3	SK-BR-3	duodenum
chr1	46660295	46660295	T	C	rs2292487	N	5.83141400057e-07	0.333466	D				synonymous SNV	POMGNT1	NM_001290130 NM_001290129 NM_017739 NM_001243766	7,7,8,8	252,615,681,681	84,205,227,227	K=>K,K=>K,K=>K,K=>K	MUSCULAR DYSTROPHY-DYSTROGLYCANOPATHY (LIMB-GIRDLE), TYPE C, 3	protein O-linked mannose beta1,2-N-acetylglucosaminyltransferase	U-251-MG	heart muscle
chr1	47655816	47655816	A	G	rs2248907	N	3.90591720209e-13	0.865216					upstream	PDZK1IP1							PDZK1 interacting protein 1	EFO-21	kidney
chr1	47906338	47906338	G	A	rs2820966	N	2.11513966064e-11	0.989018					3-UTR	FOXD2	NM_004474							WM-115	colon
chr1	47906425	47906425	G	A	rs2622916	N	6.31198560086e-09	0.989018					downstream	FOXD2								WM-115	colon
chr1	48707838	48707838	A	G	rs705430	N	2.19195026574e-08	0.981629					intronic	SLC5A9							solute carrier family 5 (sodium/glucose cotransporter), member 9	Hep-G2	duodenum
chr1	55863932	55863932	A	C	rs2802855	N	5.90053339522e-09	0.988019					intergenic
chr1	61921185	61921205	ATTTTTTTTTTTTTAAAATAC	ATTTTTTTTTTTTTTAAAATAC		N	0.490008592606						3-UTR	NFIA	NM_001145511 NM_001145512 NM_001134673 NM_005595						nuclear factor I/A	AN3-CA	thyroid gland
chr1	61921185	61921205	ATTTTTTTTTTTTTAAAATAC	ATTTTTTTTTTTTTTAAATAC		N	0.22525857389						3-UTR	NFIA	NM_001145511 NM_001145512 NM_001134673 NM_005595						nuclear factor I/A	AN3-CA	thyroid gland
chr1	62917857	62917857	G	A	rs597078	N	2.21850385174e-07	0.438898					downstream	USP1							ubiquitin specific peptidase 1	RH-30	testis
chr1	62917865	62917865	T	A	rs597076	N	4.9594518714e-07	0.435703					downstream	USP1							ubiquitin specific peptidase 1	RH-30	testis
chr1	761957	761959	ACT	ATCT		N	0.275072574615						ncRNA	LINC00115
chr1	762589	762592	GGCC	CGCG		N	0.167329534888						ncRNA	LINC00115
chr1	76378359	76378376	ATTTTTTTTTTTTCAATG	ATATATTTTTTTTCAATG		N	0.000778348185122						intronic	MSH4							mutS homolog 4 (E. coli)	AN3-CA	testis
chr1	8087064	8087067	CTGT	CTGTGT		N	3.5262611575e-16						upstream	ERRFI1							ERBB receptor feedback inhibitor 1	Hep-G2	liver
chr1	812267	812267	A	G	rs7541694	N	1.00694497185e-09	1					upstream	FAM41C
chr1	8277315	8277322	CGGGGCGA	CGGGCGA		D	0.859944581985						intergenic
chr1	8335155	8335155	T	C	rs12753024	N	3.50964882045e-07	0.69389					intergenic
chr1	8336032	8336032	C	T	rs409822	N	8.38113578538e-09	0.942292					intergenic
chr1	852133	852133	C	T	rs7518702	N	6.35132181223e-12	0.728834					downstream	LOC100130417
chr1	895706	895706	G	A	rs13303327	N	1.56434743985e-05	0.636382					upstream	KLHL17							kelch-like 17 (Drosophila)	HeLa	skin
chr1	909309	909309	T	C	rs3829738	N	2.49297590926e-06	0.254193	N	N	N	N	nonsynonymous SNV	PLEKHN1	NM_001160184 NM_032129	13,14	1426,1531	476,511	S=>P,S=>P		pleckstrin homology domain containing, family N member 1	HaCaT	skin
chr1	91999640	91999640	A	G	rs595801	N	4.51245929511e-10	0.988219					intergenic
chr1	930567	930567	A	G	rs3121574	N	2.63261645159e-05	0.371805					intergenic
chr1	935715	935715	C	T	rs3128114	N	2.59794960584e-05	0.132188					upstream	HES4								HEK-293	adipose tissue
chr1	943687	943687	G	C	rs2465140	N	3.636312249e-05	0.296126					intergenic
chr1	94386780	94386780	G	C	rs7526920	N	6.5873081212e-08	0.785144					intergenic
chr1	949608	949608	G	A	rs1921	N	4.24215301775e-10	0.338858	N	N	N	N	nonsynonymous SNV	ISG15	NM_005101	2	248	83	S=>N		ISG15 ubiquitin-like modifier	HeLa	salivary gland
chr1	9498113	9498113	T	C	rs9660890	N	0.000226648859098	0.335663					intergenic
chr1	95557220	95557220	C	T	rs6690421	N	9.64913579082e-06	0.470647					upstream	TMEM56								RH-30	liver
chr1	98387375	98387392	CCCCCCCCCCACCCCTGT	CGCCCCCCCCCACCCCTGT		N	0.0398621074855						upstream	DPYD							dihydropyrimidine dehydrogenase	U-138-MG	gallbladder
chr1	987200	987200	C	T	rs9803031	N	6.69532118991e-06	0.788738					intronic	AGRN						MYASTHENIC SYNDROME, CONGENITAL, WITH PRE- AND POSTSYNAPTIC DEFECTS	agrin	HaCaT	kidney
chr1	99127205	99127205	A	G	rs12723363	N	0.26071035862	0.865216					upstream	SNX7								SH-SY5Y	colon
chr1	9988300	9988300	G	A	rs3013783	N	0.000571774900891	0.527556					3-UTR	LZIC	NM_001316973 NM_001316974 NM_001316976 NM_032368						leucine zipper and CTNNBIP1 domain containing	K-562	testis
chr10	101689378	101689378	G	C	rs7077718	N	3.87775713762e-07	0.486821					exonic	DNMBP							dynamin binding protein	TIME	small intestine
chr10	102587574	102587574	T	C	rs12098288	N	5.88263517898e-08	0.3748					3-UTR	PAX2	NM_001304569 NM_000278 NM_003987 NM_003988 NM_003989 NM_003990					PAPILLORENAL SYNDROME	paired box gene 2	EFO-21	kidney
chr10	102770082	102770082	T	G	rs807023	N	1.55784014161e-11	0.772963					nonsynonymous SNV	PDZD7	NM_001195263	15	2564	855	N=>T		PDZ domain containing 7	THP-1	small intestine
chr10	102901616	102901616	T	C	rs7086378	N	1.23920145256e-07	0.873403					upstream	TLX1NB								BEWO	spleen
chr10	102954338	102954338	G	C	rs792728	N	5.64467512731e-08	0.621805					downstream	LINC01514
chr10	103070725	103070725	C	A	rs676307	N	1.4312481686e-23	0.961462					intergenic
chr10	103330171	103330171	C	T	rs3127248	N	0.0101440772414	0.743411					intergenic
chr10	103536199	103536199	T	G	rs2735427	N	6.45951586193e-05	0.998003					intronic	FGF8							fibroblast growth factor 8	RH-30	cerebral cortex
chr10	104235799	104235823	GTTTTTTTTGGTTTTTTTTTTAAGG	GTTTTTTTTTGGTTTTTTTTTTAAGG		N	0.214529514313						3-UTR	MFSD13A	NM_024789
chr10	104404335	104404335	A	T	rs4146426	N	0.140240356326	0.114816					5-UTR	TRIM8	NM_030912							EFO-21	kidney
chr10	105253930	105253931	CT	TC		N	2.06556046578e-06						ncRNA	NEURL1-AS1
chr10	105726338	105726338	T	C	rs6584583	N	4.74048101751e-05	0.83107					upstream	SLK							STE20-like kinase	RT-4	esophagus
chr10	114059330	114059351	TCTCTGTTTTCCTCTGTTTTCC	TCTCTGTTTTCC		N	0.133856862783						intronic	TECTB							tectorin beta	Hep-G2	liver
chr10	114186624	114186624	G	A	rs2256368	N	2.0851713689e-09	0.963858					intronic	ACSL5							acyl-CoA synthetase long-chain family member 5	CAPAN-2	small intestine
chr10	115515120	115515120	G	A	rs3981351	N	4.77087738204e-08	0.691294					5-UTR	PLEKHS1	NM_001193434 NM_001193435							RT-4	salivary gland
chr10	115540652	115540652	C	T	rs3750900	N	0.0164934098721	0.34984					3-UTR	PLEKHS1	NM_001193434 NM_001193435 NM_024889							RT-4	salivary gland
chr10	120692835	120692835	C	T	rs10787881	N	1.68274034706e-08	0.557907					intergenic
chr10	1224096	1224098	GAT	GAAT		N	0.016975980252						3-UTR	ADARB2	NM_018702						adenosine deaminase, RNA-specific, B2	HDLM-2	cerebral cortex
chr10	124595874	124595898	GAAAAAAAAAAAAAAAAGAATGGTC	GAAAAAAAAAAAAAAAGAATGGTC		N	0.000272255856544						ncRNA	FAM24B-CUZD1
chr10	126480556	126480556	T	C	rs10901821	N	0.486632794142	0.725839					upstream	METTL10							methyltransferase like 10	A-431	testis
chr10	134020093	134020093	G	A	rs2818416	N	8.98345263067e-07	0.84345					downstream	DPYSL4 STK32C
chr10	135091981	135091981	A	G	rs1005806	N	0.000907922512852	0.903155					downstream	TUBGCP2							tubulin, gamma complex associated protein 2	U-87-MG	ovary
chr10	135150600	135150600	T	G	rs35297981	N	8.26806993096e-13	0.904353					upstream	CALY								SH-SY5Y	cerebral cortex
chr10	135469915	135469915	G	A	rs28629252	N	0.00123549206182						intergenic
chr10	15058862	15058895	GAAAAAAAAAAAAAAAAAAAAAGAATGAACAGTC	GAAAAAAAAAAAAAAAAAAAGAATGAACAGTC		N	0.00677663553506						intergenic
chr10	15256194	15256194	G	A	rs3814165	N	5.39498478247e-06	0.124201	N	P	P	N	nonsynonymous SNV	FAM171A1	NM_001010924	8	1393	465	P=>S		family with sequence similarity 171, member A1	TIME	cerebral cortex
chr10	17156151	17156151	A	G	rs1801222	N	0.486632794142	0.799321	N	N	N	D	nonsynonymous SNV	CUBN	NM_001081	8	758	253	F=>S		cubilin (intrinsic factor-cobalamin receptor)	AN3-CA	kidney
chr10	17172221	17172221	T	A	rs7923464	N	8.56838869367e-06	0.748403					upstream	CUBN							cubilin (intrinsic factor-cobalamin receptor)	AN3-CA	kidney
chr10	17645814	17645814	C	T	rs2252808	N	1.77562711201e-08	0.605232					intronic	HACD1
chr10	18834797	18834820	TAAAAAAAAAAAAACCACAGACAG	TAAAAAAAAAAAACCACAGACAG		N	0.100064478815						3-UTR	NSUN6	NM_182543						NOL1/NOP2/Sun domain family member 6	K-562	liver
chr10	18948298	18948306	TGGAGAGGC	TGAGAGGC		N	0.486632794142						upstream	ARL5B							ADP-ribosylation factor-like 5B	Hep-G2	adrenal gland
chr10	20081528	20081528	C	G	rs10764159	N	1.49581546793e-05	0.596645					intergenic
chr10	24831505	24831505	G	C	rs867040	D	0.903997540474	0.213858					intronic	KIAA1217								BEWO	adipose tissue
chr10	26868240	26868240	T	A	rs79933479	N	0.000906174129341						upstream	LOC101929117
chr10	27158081	27158081	A	C	rs2505965	N	6.05272212559e-12	0.98103					intergenic
chr10	27158125	27158132	CCTCCTAC	CC		N	4.72861538583e-05						intergenic
chr10	27158125	27158132	CCTCCTAC	CCTCCTCC		N	3.35018376063e-06						intergenic
chr10	27436295	27436295	A	C	rs3780926	N	7.16032764103e-06	0.397165					intronic	YME1L1							YME1-like 1 (S. cerevisiae)	RH-30	thyroid gland
chr10	27444303	27444303	G	A	rs3824593	N	0.00675058877096	0.397165					5-UTR	MASTL	NM_001172303 NM_001172304 NM_001320756 NM_001320757 NM_032844						microtubule associated serine/threonine kinase-like	RH-30	bone marrow
chr10	27444328	27444329	CT	AC		N	0.0681193172932						5-UTR	MASTL	NM_001172303 NM_001172304 NM_001320756 NM_001320757 NM_032844						microtubule associated serine/threonine kinase-like	RH-30	bone marrow
chr10	27536232	27536232	A	G	rs1144511	N	1.10164796752e-06	0.401558					ncRNA	LRRC37A6P
chr10	27539507	27539507	C	T	rs7896532	N	6.28571328321e-08	0.521366					ncRNA	LRRC37A6P
chr10	27541730	27541730	C	T	rs495920	N	0.0597116351128	0.980631					upstream	LRRC37A6P
chr10	27703234	27703234	A	G	rs7071851	N	1.79321844485e-07	0.460064					5-UTR	PTCHD3	NM_001034842						patched domain containing 3	A-431	testis
chr10	28378758	28378758	T	C	rs2997211	N	0.00176634953823	0.931709	N	N	N	N	synonymous SNV	MPP7	NM_173496	14	965	322	S=>S		membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	CACO-2	esophagus
chr10	28957854	28957854	T	C	rs11007191	N	0.002804097021	0.264377					intergenic
chr10	30663582	30663582	T	C	rs2251778	N	3.58942387498e-16	0.990216					intergenic
chr10	3179703	3179703	C	T	rs4881107	N	0.336802065372	0.432308					downstream	PFKP PITRM1
chr10	3180343	3180343	A	G	rs2388559	N	4.10949860452e-06	0.480831					intronic	PITRM1							pitrilysin metallepetidase 1	U-2197	testis
chr10	35104568	35104568	C	G	rs117338311	N	0.00469289021567	0.199081					upstream	PARD3 PARD3-AS1
chr10	37234575	37234576	AG	CC		N	8.4540064563e-05						intergenic
chr10	38989586	38989586	A	G		N	0.00102226261515						upstream	ACTR3BP5
chr10	42645709	42645709	A	G	rs74793214	N	2.29689539992e-05						intergenic
chr10	42774410	42774410	G	T	rs140348669	N	0.00633982848376						intergenic
chr10	43265880	43265880	G	C	rs947549	N	1.02737578445e-08	0.875799					downstream	LOC105378269
chr10	44789602	44789602	G	A	rs809601	N	7.86018894416e-09	0.899561					3-UTR	C10orf142	NM_001258000
chr10	49218553	49218553	T	C	rs77581903	N	0.027032142505						ncRNA	AGAP12P
chr10	51549221	51549224	GCTG	GCTCTG		N	0.00371494307183						intronic	TIMM23B								U-937	testis
chr10	5164265	5164267	TGC	TGCAAGC		N	0.0211813263595						intergenic
chr10	5164276	5164276	A	C	rs12775468	N	3.82994898018e-07	0.884784					intergenic
chr10	58355612	58355635	GTTTTTTTTTTTTTTTTTGGCATG	GTTTTTTTTTTTTTTTGGCATG		N	0.041888192296						intergenic
chr10	58355612	58355635	GTTTTTTTTTTTTTTTTTGGCATG	GTTTTTTTTTTTTTTTTGGCATG		N	0.041888192296						intergenic
chr10	6188338	6188338	A	G	rs7074082	N	3.90993790234e-07	0.316893					5-UTR	PFKFB3	NM_001282630						6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	A-549	adipose tissue
chr10	71027029	71027029	A	G	rs4746832	N	6.00576868237e-07	0.990615					3-UTR	HKDC1	NM_025130						hexokinase domain containing 1	CAPAN-2	duodenum
chr10	71337429	71337429	A	G	rs2812544	N	9.810498941e-11	0.948882					intergenic
chr10	72575259	72575272	TGGGGGGGGGCAGT	TGGGGGGGGCAGT		N	0.00234867888503						upstream	SGPL1							sphingosine phosphate lyase 1	RT-4	urinary bladder
chr10	88281779	88281779	T	C	rs1917161	N	0.486632794142	0.816893					upstream	WAPL
chr10	88425754	88425754	A	G	rs2736687	N	3.0907307963e-13	0.998602					3-UTR	OPN4	NM_001030015 NM_033282						opsin 4 (melanopsin)	U-138-MG	cerebral cortex
chr10	88428076	88428076	A	T	rs2675692	N	2.89149565402e-10	0.828075					upstream	LDB3						MYOPATHY, MYOFIBRILLAR, 4	LIM domain binding 3	SCLC-21H	heart muscle
chr10	88723494	88723494	A	G	rs2131395	N	9.77078769455e-13	0.997604					downstream	SNCG								CAPAN-2	adipose tissue
chr10	89623901	89623901	G	C	rs2943772	N	0.00449895858765	1					nonsynonymous SNV	PTEN	NM_001304717	2	194	65	C=>S			Karpas-707	adipose tissue
chr10	92753967	92753967	C	T	rs7917186	N	5.48375169274e-07	0.988019					intergenic
chr10	9407618	9407618	C	T	rs2783057	N	7.55532425956e-07	0.784744					intergenic
chr10	9407810	9407810	T	C	rs55826330	N	6.37510424895e-07	0.784545					intergenic
chr10	9407815	9407821	TTTCTCC	TTCC		N	0.00835019070655						intergenic
chr10	9407906	9407906	G	A	rs2783056	N	4.05009245696e-07	0.784545					intergenic
chr10	95256275	95256275	G	A	rs1880263	N	0.0174004789442	0.310503					upstream	CEP55							centrosomal protein 55	A-431	testis
chr10	96522365	96522365	T	C	rs4986894	N	0.000396010640543	0.21905					upstream	CYP2C19						MEPHENYTOIN, POOR METABOLISM OF		CACO-2	liver
chr10	98819317	98819317	A	G	rs2817676	N	1.00606438735e-08	0.605032	D	N	N	N	intronic	SLIT1							slit homolog 1 (Drosophila)	MOLT-4	cerebral cortex
chr10	99094436	99094436	G	A	rs1890966	N	1.85342546866e-10	0.318291					5-UTR	FRAT2	NM_012083							U-937	duodenum
chr10	99330813	99330813	A	G	rs10748705	N	3.19873056333e-15	0.98143					3-UTR	UBTD1	NM_024954							PC-3	testis
chr11	100814609	100814609	G	T	rs618155	N	9.1009294545e-10	0.915535					intronic	ARHGAP42							Rho GTPase activating protein 42	CAPAN-2	placenta
chr11	1027811	1027811	C	T	rs7481521	N	3.58990400855e-05	0.396965	N	D	P	N	nonsynonymous SNV	MUC6	NM_005961	16	1855	619	V=>M		mucin 6, gastric	SCLC-21H	stomach
chr11	105007547	105007547	C	T	rs1503393	N	3.81811808836e-08	0.958466					downstream	CARD18								U-2-OS	skin
chr11	1081074	1081074	T	C	rs41411848	N	1.12697504662e-08	0.36262					nonsynonymous SNV	MUC2	NM_002457	11	1370	457	V=>A		mucin 2
chr11	1081151	1081151	T	C	rs41464048	N	7.75717268198e-08	0.369808					intronic	MUC2							mucin 2
chr11	1081757	1081757	G	C	rs57737240	N	1.15544462886e-08	0.367013					nonsynonymous SNV	MUC2	NM_002457	13	1685	562	S=>T		mucin 2
chr11	11398725	11398725	T	C	rs12290003	N	0.00241367309354	0.0579073					intronic	GALNT18								HaCaT	thyroid gland
chr11	117709754	117709754	C	T	rs564989	N	4.11563334524e-08	0.636382					intronic	FXYD6 FXYD6-FXYD2
chr11	118302901	118302901	T	C	rs510997	N	0.0126286465675	0.277157					intergenic
chr11	119038913	119038913	T	G	rs10790285	N	6.46600557385e-14	1					upstream	NLRX1							NLR family member X1	EFO-21	esophagus
chr11	121233907	121233907	A	G	rs11218274	N	1.86117867997e-05	0.532748					intergenic
chr11	12301957	12301957	A	G	rs2403609	N	4.11695246783e-08	0.811502					intergenic
chr11	12315186	12315186	G	A	rs10741578	N	3.80411108836e-07	0.533746	N	N	N	N	nonsynonymous SNV	MICALCL	NM_032867	3	208	70	V=>I		MICAL C-terminal like	RT-4	skin
chr11	12534707	12534707	G	A	rs2243707	N	1.27748744916e-09	0.750799					intronic	PARVA							parvin, alpha	TIME	uterus
chr11	133670275	133670275	G	A	rs35223779	N	1.58976999955e-05	0.340056					ncRNA	LOC646522
chr11	133901854	133901854	A	G	rs608838	N	4.08961087217e-10	0.637181					upstream	LOC100128239
chr11	134117015	134117015	T	C	rs492761	N	1.10308828738e-08	0.925319					3-UTR	VPS26B	NM_052875							MOLT-4	skin
chr11	1481930	1481930	A	G	rs4963048	N	0.000321097206324		N	N	N	N	nonsynonymous SNV	BRSK2	NM_001256630 NM_001256627	20,20	2278,760,2188,730	760,730	T=>A,T=>A		BR serine/threonine kinase 2	SCLC-21H	pancreas
chr11	1491096	1491096	G	A	rs9440	N	2.63425503633e-09	0.548323					3-UTR	MOB2	NM_053005 NM_001172223						MOB kinase activator 2	CAPAN-2	skin
chr11	1508353	1508353	A	G	rs1609986	N	2.1003110362e-07	0.940296					upstream	MOB2							MOB kinase activator 2	CAPAN-2	skin
chr11	1650047	1650047	T	C	rs1021345	N	1.08014774014e-05	0.221645					upstream	KRTAP5-5								SH-SY5Y	gallbladder
chr11	17740991	17741001	ACCCCCCCAAG	ACCCCCCCCAAG		N	0.142152503133						upstream	MYOD1							myogenic differentiation 1	RH-30	prostate
chr11	17756213	17756213	G	A	rs28724581	N	0.486632794142	0.43131					intergenic
chr11	18022305	18022309	TCACA	TA		D	0.830316185951						intronic	SERGEF							secretion regulating guanine nucleotide exchange factor	Hep-G2	thyroid gland
chr11	18063977	18063977	A	T	rs623580	N	4.67582685815e-06	0.60643					intergenic
chr11	18127558	18127573	CCGGCGGCGGCGGCGA	CCGGCGGCGGCGGCGGCGA		N	0.486632794142						nonframeshift substitution	SAAL1	NM_138421	1	16					Daudi	lymph node
chr11	18231749	18231749	T	G	rs2468789	N	7.40697316814e-07	0.880391					ncRNA	LOC494141
chr11	18253176	18253176	C	T	rs2460827	N	2.23688061851e-07	0.880591	N	N	N	N	nonsynonymous SNV	SAA2-SAA4 SAA4	NM_001199744 NM_006512	6,4	500,266	167,89	C=>Y,C=>Y
chr11	1848171	1848178	GCCCCCAG	GCCCCCCAG		N	0.00117278390098						intergenic
chr11	18656062	18656062	G	C	rs7943121	N	0.486632794142	0.469449					upstream	SPTY2D1							SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	Karpas-707	bone marrow
chr11	18743180	18743180	C	G	rs10832975	N	0.000102493970189	0.360024	N	N	N	N	nonsynonymous SNV	IGSF22	NM_173588	4	280	94	A=>P			AN3-CA	kidney
chr11	18747959	18747959	T	C	rs4237729	N	1.21100178774e-08	0.76258					upstream	IGSF22								AN3-CA	kidney
chr11	1887806	1887806	T	A	rs7938342	N	4.88137118282e-07	0.624401	N	P	N	N	nonsynonymous SNV	LSP1	NM_001242932	2	102	34	H=>Q		lymphocyte specific 1	HDLM-2	spleen
chr11	19167850	19167850	A	G	rs2271001	N	1.54195231516e-06	0.607628	N	N	N	N	nonsynonymous SNV	ZDHHC13	NM_019028	3	296	99	K=>R		zinc finger, DHHC domain containing 13	HaCaT	esophagus
chr11	23541506	23541506	A	G	rs11027275	N	1.14531193418e-08	0.709665					intergenic
chr11	295006	295006	C	G	rs2242564	N	7.24198798707e-06	0.251597					3-UTR	PGGHG	NM_025092
chr11	295670	295670	G	A	rs7104019	N	9.81245875664e-08	0.650958					3-UTR	PGGHG	NM_025092
chr11	3078885	3078885	T	G	rs384490	N	0.486632794142	0.40655					upstream	CARS							cysteinyl-tRNA synthetase	Karpas-707	thyroid gland
chr11	3247260	3247260	C	G	rs7483030	N	2.88552515215e-09	0.995208					intergenic
chr11	33722483	33722485	TCG	TGCG		N	0.113582283258						upstream	C11orf91								HeLa	testis
chr11	3381369	3381369	G	C	rs62619253	N	5.55517708656e-13	0.223842	D	N	N	N	nonsynonymous SNV	ZNF195	NM_001130520 NM_001130519 NM_001256825 NM_001242843 NM_001242841 NM_007152 NM_001256824 NM_001242842	6,5,5,5,6,4,6,6	869,800,665,665,812,653,758,734	290,267,222,222,271,218,253,245	P=>R,P=>R,P=>R,P=>R,P=>R,P=>R,P=>R,P=>R			NTERA-2	lymph node
chr11	3443773	3443773	A	G	rs7124571	N	0.0865351259708	0.6252					intergenic
chr11	3444608	3444608	G	A	rs11027128	N	2.47461393883e-05	0.414337					intergenic
chr11	3444641	3444641	G	C	rs11027129	N	0.000386807776522	0.409545					intergenic
chr11	391748	391748	T	A	rs6598026	N	4.13630805269e-05	0.539736					upstream	PKP3							plakophilin 3	HaCaT	skin
chr11	406043	406043	G	A	rs7947	N	1.78726350668e-13	0.906749	N	N	N	N	synonymous SNV	SIGIRR	NM_021805 NM_001135054 NM_001135053	10,10,10	1086,1086,1086	362,362,362	V=>V,V=>V,V=>V		single immunoglobulin and toll-interleukin 1 receptor (TIR) domain	CAPAN-2	spleen
chr11	45255075	45255075	G	C	rs3740783	N	9.99842450256e-06	0.791534					3-UTR	PRDM11	NM_001256695						PR domain containing 11	U-138-MG	thyroid gland
chr11	45257823	45257823	G	C	rs7395987	N	3.30193685727e-08	1					intergenic
chr11	45931019	45931019	C	A	rs11600112	N	4.9362613606e-13	0.695887					downstream	PEX16						PEROXISOME BIOGENESIS DISORDER 8B	peroxisomal biogenesis factor 16	U-266/70	duodenum
chr11	4739784	4739784	C	T	rs4910666	N	3.16944933729e-05	0.40615					intergenic
chr11	49913374	49913374	G	A	rs10839438	N	1.58227546621e-08	0.685903					intergenic
chr11	49915335	49915339	GGGCC	CGGCT		N	0.00101311097387						intergenic
chr11	49915344	49915344	G	A	rs4881625	N	2.18956074605e-07	0.686502					intergenic
chr11	5199222	5199222	A	C	rs7924390	N	1.75491692289e-08	0.718051					intergenic
chr11	5199340	5199342	AAT	AATGCCCAT		N	0.00354923936538						intergenic
chr11	531514	531514	T	C	rs11246174	N	2.10557254832e-06	0.241414					downstream	HRAS								SCLC-21H	skin
chr11	5345128	5345128	G	A	rs10837814	N	1.84666873793e-07	0.44349	D	D	D	N	nonsynonymous SNV	OR51B2	NM_033180	1	400	134	L=>F
chr11	5444061	5444061	G	A	rs2736586	N	8.91675969172e-12	0.453674	N	N	N	N	nonsynonymous SNV	OR51Q1	NM_001004757	1	631	211	V=>M			RT-4	adipose tissue
chr11	5444353	5444353	T	C	rs2647573	N	3.35259180417e-08	0.453674	D	N	N	N	nonsynonymous SNV	OR51Q1	NM_001004757	1	923	308	F=>S			RT-4	adipose tissue
chr11	55038375	55038375	T	C	rs3213870	N	3.44199338542e-06	0.581869					3-UTR	TRIM48	NM_024114							SK-MEL-30	skin
chr11	55682111	55682111	T	G	rs2940752	N	5.76341072644e-08	0.996805					upstream	OR5W2								A-431	adipose tissue
chr11	6129837	6129837	C	T	rs1462983	N	1.30898003547e-09	0.503994	N	D	D	N	nonsynonymous SNV	OR56B4	NM_001005181	1	829	277	P=>S			U-266/84	appendix
chr11	62619000	62619000	C	G	rs524891	N	0.0536910966039	0.9998					downstream	SNHG1
chr11	6342329	6342329	T	G	rs1488864	N	0.486632794142	0.777356					upstream	PRKCDBP								WM-115	testis
chr11	64012949	64012962	TGGGGGGGGGAGCT	TGGGGGGGGAGCT		N	0.161012083292						intronic	PPP1R14B								PC-3	skin
chr11	64091782	64091782	T	C	rs604493	N	1.11261595492e-08	0.935304					intergenic
chr11	65748215	65748215	T	C	rs9666939	N	4.59005136122e-08	0.945288					downstream	SART1							squamous cell carcinoma antigen recognized by T cells 1	MCF-7	bone marrow
chr11	6662745	6662770	CCAGCAGCAGCAGCAGCAGCAGCAGC	CCAGCAGCAGCAGCAGCAGCAGCAGCAGC		N	0.000126629762235						nonframeshift substitution	DCHS1	NM_003737	2	75				dachsous 1 (Drosophila)	SH-SY5Y	uterus
chr11	67378229	67378229	T	G	rs3016861	N	5.62330892961e-09	0.957668					intronic	NDUFV1							NADH dehydrogenase (ubiquinone) flavoprotein 1	RPMI-8226	heart muscle
chr11	67380355	67380355	T	C	rs7947114	N	1.41198983061e-10	0.951877					downstream	DOC2GP NDUFV1
chr11	67383557	67383557	C	T	rs56092845	N	2.42087789815e-08	0.441693					upstream	DOC2GP
chr11	67421496	67421496	C	T	rs2514023	N	7.55415552334e-09	0.978435					intergenic
chr11	67430264	67430264	A	G	rs1551885	N	4.04434459256e-08	0.940096					3-UTR	ALDH3B2	NM_000695 NM_001031615							MCF-7	skin
chr11	68767643	68767643	T	C	rs1249581	N	2.99708369234e-10	0.932508					intergenic
chr11	69282036	69282036	C	A	rs3740643	N	5.67375444405e-08	0.558107					intergenic
chr11	69924226	69924226	C	T	rs2509134	N	7.68012942132e-09	0.840655					upstream	ANO1							anoctamin 1, calcium activated chloride channel	HaCaT	salivary gland
chr11	70217547	70217547	C	A		D	0.940528988838						intronic	PPFIA1							protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1	A-431	testis
chr11	70217547	70217547	C	G	rs10898970	D	0.940528988838						intronic	PPFIA1							protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1	A-431	testis
chr11	709401	709401	A	G	rs10902202	N	3.86121740803e-07	0.349241					5-UTR	EPS8L2	NM_022772						EPS8-like 2	SK-BR-3	small intestine
chr11	71497631	71497631	C	T	rs7112161	N	0.0373706147075	0.453474					upstream	FAM86C1								RPMI-8226	thyroid gland
chr11	71549174	71549174	G	A	rs7107929	N	5.08641414854e-06	0.576278					downstream	DEFB108B								NB-4	adipose tissue
chr11	722202	722202	G	C	rs9734804	N	5.42918066461e-14	0.302915					intronic	EPS8L2							EPS8-like 2	SK-BR-3	small intestine
chr11	7686602	7686607	GTGTTA	GTGTTTGTTA		N	0.000685683102347						frameshift substitution	CYB5R2	NM_001302826 NM_016229	9,9	829,829				cytochrome b5 reductase 2	WM-115	testis
chr11	7928108	7928108	C	T	rs4758252	N	1.47925602323e-10	0.938898					upstream	LOC283299
chr11	7961931	7961931	A	G	rs7942511	N	3.52634003775e-07	0.396765					upstream	OR10A3								A-431	skin
chr11	82959338	82959379	TACACACACACACACACACACACACACACACACACACACACT	TACACACACACACACACACACACACACACACACACACT		D	0.721347033978						3-UTR	ANKRD42	NM_001300975 NM_182603						ankyrin repeat domain 42	U-2197	testis
chr11	82996986	82996986	A	C	rs494791	N	0.486632794142	0.677716	N	N	N	N	nonsynonymous SNV	CCDC90B	NM_021825	1	30	10	F=>L		coiled-coil domain containing 90B	U-2197	testis
chr11	840319	840319	C	T	rs3059	N	0.247321531177	0.640974					3-UTR	POLR2L	NM_021128							PC-3	adipose tissue
chr11	842627	842630	TTCC	CTCT		N	0.486632794142						upstream	POLR2L TSPAN4
chr11	842682	842682	A	G	rs9704919	N	0.00142984115519	0.645966					upstream	POLR2L TSPAN4
chr11	8496516	8496516	G	A	rs2289923	N	7.02115926288e-07	0.546725					5-UTR	STK33	NM_001289061 NM_030906						serine/threonine kinase 33	HEK-293	testis
chr11	85522332	85522332	G	A	rs2044392	N	0.258192300797	0.372604					upstream	SYTL2							synaptotagmin-like 2	RH-30	stomach
chr11	8703973	8703975	GCA	GCCA		N	0.486632794142						upstream	RPL27A							ribosomal protein L27A	HEK-293	ovary
chr11	89946502	89946526	CAAAAAAAAAAAAAAAAATCACCTT	CAAAAAAAAAAAAAAATCACCTT		D	0.530489087105						intronic	CHORDC1							cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1	CACO-2	lymph node
chr11	9301445	9301445	G	A	rs7358392	N	1.07072564788e-05	0.403954					downstream	TMEM41B							transmembrane protein 41B	CAPAN-2	duodenum
chr11	9336321	9336321	G	A	rs4420270	N	0.486632794142	0.540136					upstream	TMEM41B							transmembrane protein 41B	CAPAN-2	duodenum
chr11	93861570	93861570	C	T	rs72968791	N	0.0452775023878	0.0615016					upstream	PANX1							pannexin 1	HaCaT	urinary bladder
chr12	101779964	101779964	T	C	rs4764794	N	1.34447430966e-08	0.891773					3-UTR	UTP20	NM_014503						UTP20, small subunit (SSU) processome component, homolog (yeast)	NTERA-2	testis
chr12	101801695	101801695	G	A	rs4764796	N	0.486632794142	0.484824					upstream	ARL1								RT-4	thyroid gland
chr12	101988774	101988774	G	T	rs1697477	N	4.15089213002e-10	0.163738					5-UTR	MYBPC1	NM_001254718 NM_001254719 NM_001254720 NM_001254721 NM_001254722 NM_001254723 NM_002465 NM_206819 NM_206820 NM_206821						myosin binding protein C, slow-type	RT-4	prostate
chr12	1022452	1022452	C	T	rs1051669	N	5.08640914632e-06	0.254792					3-UTR	RAD52	NM_001297421 NM_134424 NM_001297419						RAD52 homolog (S. cerevisiae)	HDLM-2	ovary
chr12	104124018	104124018	A	C	rs17034433	N	0.000690446700901	0.0672923	N	N	N	N	nonsynonymous SNV	STAB2	NM_017564	49	5207	1736	N=>T		stabilin 2	BEWO	spleen
chr12	104235023	104235023	A	C	rs11111809	N	0.486632794142	0.354633					upstream	NT5DC3							5'-nucleotidase domain containing 3	K-562	bone marrow
chr12	104237512	104237512	T	C	rs1370784	N	1.61018233484e-05	0.355831					downstream	TTC41P
chr12	104254932	104254932	G	A	rs11111817	N	0.000268388917902	0.45607					ncRNA	TTC41P
chr12	105260365	105260394	TAAAAAAAAAAAAAAAAAGAGAGACAACAT	TAAAAAAAAAAAAAAAAGAGAGACAACAT		N	0.000717563903891						intronic	SLC41A2							solute carrier family 41, member 2	HDLM-2	liver
chr12	105629865	105629865	C	G	rs1196785	N	0.486632794142	0.630192					5-UTR	APPL2	NM_001251904 NM_018171						adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	U-138-MG	colon
chr12	10704264	10704264	A	G	rs10734837	N	3.99300326137e-09	0.893371					intergenic
chr12	108297673	108297673	G	C	rs7980811	N	0.486632794142	0.260383					upstream	LOC728739
chr12	108676498	108676498	A	C	rs10746122	N	8.91401796821e-09	0.788339					intergenic
chr12	108687449	108687476	GAAAAAAAAAAAAAAAAAAGCAGCAATT	GAAAAAAAAAAAAAAAAAGCAGCAATT		N	0.105125792325						intronic	CMKLR1							chemokine-like receptor 1	RPMI-8226	spleen
chr12	108687449	108687476	GAAAAAAAAAAAAAAAAAAGCAGCAATT	GAAAAAAAAAAAAAAAAGCAGCAATT		N	0.105125792325						intronic	CMKLR1							chemokine-like receptor 1	RPMI-8226	spleen
chr12	109458559	109458578	ACCCCCCCCCACCCCCCTTG	ACCCCCCCCCCCACCCCCCTTG		N	0.486632794142						intronic	SVOP							SV2 related protein	SCLC-21H	cerebral cortex
chr12	110318261	110318261	G	C	rs71458309	N	0.486632794142	0.242812					5-UTR	GLTP	NM_016433							RT-4	skin
chr12	11201962	11201962	T	C	rs2597987	N	6.09948225261e-09	0.971446					ncRNA	PRH1-PRR4
chr12	112599061	112599063	TGC	TGCACTGGGGC		D	0.941953122616						3-UTR	HECTD4	NM_001109662							NB-4	bone marrow
chr12	11544524	11544531	TTTTTCCA	TATTTCCCA		N	0.147602662444						3-UTR	PRB2	NM_006248							CAPAN-2	salivary gland
chr12	121341849	121341849	A	G	rs2686458	N	0.0425739809871	0.960863					5-UTR	SPPL3	NM_139015						signal peptide peptidase 3	RT-4	testis
chr12	121600180	121600180	C	T	rs208293	N	6.63656749111e-07	0.469249					intronic	P2RX7							purinergic receptor P2X, ligand-gated ion channel, 7	Karpas-707	cerebral cortex
chr12	121600252	121600253	GT	AC		N	8.42917233967e-06						nonframeshift substitution	P2RX7	NM_002562	5	462				purinergic receptor P2X, ligand-gated ion channel, 7	Karpas-707	cerebral cortex
chr12	121600252	121600253	GT	GC		N	8.42917233967e-06						nonframeshift substitution	P2RX7	NM_002562	5	462				purinergic receptor P2X, ligand-gated ion channel, 7	Karpas-707	cerebral cortex
chr12	12223263	12223263	G	C	rs1990699	N	0.000464497890789	0.279353					upstream	BCL2L14							BCL2-like 14 (apoptosis facilitator)	CAPAN-2	duodenum
chr12	124102656	124102656	C	T	rs59126974	N	0.0769957825541	0.252196					intronic	DDX55							DEAD (Asp-Glu-Ala-Asp) box polypeptide 55	NB-4	lymph node
chr12	12442945	12442945	C	T	rs2417180	N	4.01977917619e-09	0.995008					intergenic
chr12	126994913	126994913	G	A	rs10847172	N	8.41377811867e-09	0.679113					intergenic
chr12	12763799	12763799	C	A	rs7133523	N	5.15105682553e-08	0.876597					upstream	CREBL2							cAMP responsive element binding protein-like 2	HDLM-2	adrenal gland
chr12	12870695	12870695	T	C	rs34330	N	0.17358507216	0.661741					5-UTR	CDKN1B	NM_004064						cyclin-dependent kinase inhibitor 1B	Karpas-707	ovary
chr12	128900005	128900005	G	A	rs1683723	N	0.000140343690873	0.510383	N	N	N	N	nonsynonymous SNV	TMEM132C	NM_001136103	2	814	272	V=>I		transmembrane protein 132C	Daudi	adipose tissue
chr12	129556884	129556885	TG	CT		N	0.00345166469924						3-UTR	TMEM132D	NM_133448						transmembrane protein 132D	MOLT-4	cerebral cortex
chr12	130635355	130635355	A	G	rs872353	N	1.00687831406e-08	0.648962					downstream	FZD10-AS1
chr12	130635422	130635436	ACCCCCCCCCCAGCT	ACCCCCACAGCT		N	0.000775733205955						downstream	FZD10-AS1
chr12	130635460	130635460	T	C	rs7134211	N	1.15230180953e-08	0.697484					downstream	FZD10-AS1
chr12	130647709	130647709	G	C	rs10848026	N	4.13405985e-07	0.320088					synonymous SNV	FZD10	NM_007197	1	222	74	L=>L		frizzled homolog 10 (Drosophila)	BEWO	esophagus
chr12	130899033	130899033	C	A	rs10773780	N	1.63179247892e-08	0.585264					intronic	RIMBP2							RIMS binding protein 2	SH-SY5Y	cerebral cortex
chr12	130991286	130991286	A	G	rs1464109	N	1.53446211293e-09	0.979633					5-UTR	RIMBP2	NM_015347						RIMS binding protein 2	SH-SY5Y	cerebral cortex
chr12	131306314	131306314	C	G	rs17564	N	5.05840716869e-07	0.604034	N	N	N	N	nonsynonymous SNV	STX2	NM_194356 NM_001980	3,3	125,125	42,42	S=>T,S=>T		syntaxin 2	U-87-MG	testis
chr12	133786506	133786506	G	C	rs148542377	N	0.116887576878	0.82528					intergenic
chr12	14402744	14402744	A	G	rs10772756	N	4.92684932851e-07	0.749401					intergenic
chr12	1609687	1609687	G	A	rs10848498	N	1.70191960933e-05	0.343251					ncRNA	LINC00942
chr12	1675847	1675847	G	A	rs73030956	N	0.486632794142	0.180511					3-UTR	FBXL14	NM_152441							Karpas-707	testis
chr12	18854540	18854591	ATCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTCCA	ATCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTCCA		N	0.107690580189						intronic	PLCZ1							phospholipase C, zeta 1	NTERA-2	testis
chr12	1906632	1906632	G	A	rs61741336	N	0.0341082625091	0.00678914	N	N	N	N	nonsynonymous SNV	CACNA2D4	NM_172364	35	3065	1022	P=>L		calcium channel, voltage-dependent, alpha 2/delta subunit 4	HMC-1	appendix
chr12	21654644	21654644	C	A	rs1860947	N	0.0317620001733	0.867812					upstream	GOLT1B RECQL
chr12	2851357	2851357	C	T	rs10774059	N	5.49387035864e-10	0.743211					intergenic
chr12	2851563	2851563	T	C	rs10774060	N	1.00991928775e-06	0.722444					intergenic
chr12	2851583	2851583	G	C	rs10848697	N	2.66687010253e-07	0.675319					intergenic
chr12	2851603	2851603	G	A	rs4635140	N	2.20419707375e-07	0.612021					intergenic
chr12	29688202	29688202	T	C	rs299453	N	6.26791066966e-12	0.497204					intronic	TMTC1							transmembrane and tetratricopeptide repeat containing 1	RH-30	spleen
chr12	30906875	30906875	C	T	rs33255	N	0.00345011474565	1					5-UTR	CAPRIN2	NM_001002259 NM_001206856 NM_001319842 NM_001319843 NM_023925 NM_032156						caprin family member 2	U-2197	testis
chr12	32259367	32259367	A	G	rs1151016	N	8.28669180919e-06	0.819888					upstream	BICD1							bicaudal D homolog 1 (Drosophila)	NTERA-2	ovary
chr12	3310335	3310335	C	T	rs740777	N	8.63380080318e-07	0.29972					intronic	TSPAN9							tetraspanin 9	RH-30	heart muscle
chr12	33138770	33138770	C	T	rs12231850	N	8.98544203665e-06	0.234425					intergenic
chr12	37937774	37937774	C	A	rs10880821	N	4.78787023894e-06	0.590256					intergenic
chr12	38556172	38556172	G	A	rs10880645	N	5.48049683857e-06	0.292732					intergenic
chr12	40786987	40786987	A	G	rs1427259	N	1.52948743448e-07	0.832468					upstream	MUC19							mucin 19
chr12	42326739	42326739	A	G	rs1234015	N	9.44439193518e-10	0.994409					intergenic
chr12	42538837	42538837	T	C	rs10880253	N	0.486632794142	0.558107					upstream	GXYLT1							glucoside xylosyltransferase 1	U-2-OS	testis
chr12	42538847	42538847	C	G	rs10880254	N	0.486632794142	0.547324					upstream	GXYLT1							glucoside xylosyltransferase 1	U-2-OS	testis
chr12	42878100	42878100	C	G	rs1669917	N	2.3032194356e-24	0.829273					intronic	PRICKLE1							prickle homolog 1 (Drosophila)	NTERA-2	spleen
chr12	46121662	46121662	T	A	rs888559	N	0.486632794142	0.986621					ncRNA	LINC00938
chr12	4735968	4735970	AGA	CAG		N	0.0032173236832						nonframeshift substitution	AKAP3	NM_001278309 NM_006422	5,5	2098,2098				A kinase (PRKA) anchor protein 3	NTERA-2	testis
chr12	4736677	4736677	G	C	rs11063266	N	1.06608109007e-08	0.911542	N	N	N	N	nonsynonymous SNV	AKAP3	NM_001278309 NM_006422	5,5	1391,1391	464,464	T=>S,T=>S		A kinase (PRKA) anchor protein 3	NTERA-2	testis
chr12	49364391	49364391	G	A	rs833843	N	4.10641576298e-10	0.387181					intronic	WNT10B							wingless related MMTV integration site 10b	U-266/84	cerebral cortex
chr12	496439	496439	A	T	rs7965303	N	3.01047020912e-05	0.649161	N			D	intronic	KDM5A							lysine (K)-specific demethylase 5A	HDLM-2	testis
chr12	50450828	50450828	C	T	rs836185	N	3.4213167055e-06	0.927516					upstream	ASIC1								SH-SY5Y	cerebral cortex
chr12	50855195	50855195	A	G	rs4351895	N	0.000199224145035	0.566893					3-UTR	LARP4	NM_001170804						La ribonucleoprotein domain family, member 4	CACO-2	liver
chr12	5152949	5152949	C	T	rs10744676	N	6.33434808606e-07	0.909545					upstream	KCNA5							potassium voltage-gated channel, shaker-related subfamily, member 5	NTERA-2	heart muscle
chr12	52840036	52840036	G	A	rs373992	N	4.13185262005e-05	0.517173					downstream	KRT6B							keratin 6B	HaCaT	esophagus
chr12	52845801	52845801	T	C	rs428894	N	0.000100860183011		N	N	N	N	nonsynonymous SNV	KRT6B	NM_005555	1	62	21	N=>S		keratin 6B	HaCaT	esophagus
chr12	53165940	53165940	C	T	rs6580904	N	3.62458081327e-07	0.600839	N	D	P	D	nonsynonymous SNV	KRT76	NM_015848	5	1075,359	359	A=>T		keratin 76	HaCaT	skin
chr12	53189983	53189983	A	G	rs1873648	N	1.61216338057e-08	0.828275					upstream	KRT3								HaCaT	esophagus
chr12	550911	550934	CTTTTTTTTTTTTTTTTTCAAACC	CTTTTTTTTTTTTTTTTCAAACC		D	0.74551230669						intronic	CCDC77							coiled-coil domain containing 77	NTERA-2	testis
chr12	55250549	55250549	T	G	rs10783685	N	0.000399395270506						intronic	MUCL1								SK-BR-3	salivary gland
chr12	55758832	55758832	T	C	rs7962135	N	1.7114318851e-08	0.850639					upstream	OR6C75								A-431	adipose tissue
chr12	55794264	55794264	A	G	rs7967395	N	5.93325832909e-10	0.780551					upstream	OR6C65								A-431	adipose tissue
chr12	55886294	55886294	G	A	rs7133698	N	1.29120550696e-07	0.623602	N	N	N	N	nonsynonymous SNV	OR6C68	NM_001005519	1	133,45	45	A=>T			A-431	adipose tissue
chr12	57445892	57445914	CAAAAAAAAAAAAAAAATTCTAG	CAAAAAAAAAAAAAAAAATTCTAG		N	0.00440984778106						intergenic
chr12	57977003	57977003	C	T	rs775249	N	0.00528560159728	0.211462					intronic	KIF5A							kinesin family member 5A	SCLC-21H	cerebral cortex
chr12	58062667	58062667	C	T	rs10876993	N	1.18386451504e-05	0.471046					intergenic
chr12	60127590	60127590	A	T	rs2706309	N	0.000127201827127	0.433906					intronic	SLC16A7							solute carrier family 16 (monocarboxylic acid transporters), member 7	RT-4	heart muscle
chr12	60169265	60169265	G	A	rs12718000	N	0.0026862740051	0.131589					intronic	SLC16A7							solute carrier family 16 (monocarboxylic acid transporters), member 7	RT-4	heart muscle
chr12	62261077	62261097	GAAAAAAAAAACAGAAAAGCT	GAAAAAAAAAAACAGAAAAGCT		N	0.0186092481017						intronic	FAM19A2								WM-115	cerebral cortex
chr12	62729222	62729222	G	C	rs2242032	N	0.003901373595	0.410343					3-UTR	USP15	NM_001252079						ubiquitin specific peptidase 15	K-562	bone marrow
chr12	6380272	6380272	G	A	rs61918196	N	0.000170327999513	0.163738					intergenic
chr12	6562753	6562753	A	G	rs2532501	N	7.43064724334e-12	0.6877	N	N	N	N	nonsynonymous SNV	TAPBPL	NM_018009	3	436	146	M=>V			CAPAN-2	duodenum
chr12	6572048	6572048	A	G	rs1045452	N	5.83103065832e-10	0.730032					3-UTR	VAMP1	NM_001297438 NM_014231 NM_199245							U-698	bone marrow
chr12	65847960	65847968	AGGGGGGCT	AGGGGGCT		N	0.179154366255						intronic	MSRB3							methionine sulfoxide reductase B3	U-937	esophagus
chr12	66358079	66358082	AAGG	AG		D	0.996825575829						3-UTR	HMGA2	NM_003483							NTERA-2	testis
chr12	69979517	69979517	C	T	rs2601006	N	0.0053444118239	0.415935					5-UTR	CCT2	NM_001198842						chaperonin containing Tcp1, subunit 2 (beta)	U-698	testis
chr12	70093206	70093206	G	C	rs775431	N	1.47006407047e-10	0.666334					upstream	BEST3							bestrophin 3	U-698	cerebral cortex
chr12	70320254	70320254	A	G	rs1152964	N	1.89727834368e-05	0.235623					intronic	MYRFL								NTERA-2	duodenum
chr12	7053362	7053362	A	G	rs915997	N	0.486632794142	0.907149					intronic	C12orf57								NTERA-2	ovary
chr12	7649484	7649484	T	C	rs4883263	N	4.39745854237e-05	0.76258	N	N	N	N	nonsynonymous SNV	CD163	NM_203416 NM_004244	5,5	1024,1024	342,342	I=>V,I=>V		CD163 antigen	CACO-2	appendix
chr12	80169497	80169549	TAAAAAAAAAAAACAAAAAACAAACCAACAACAACAAAAACACCCCAGAAAAT	TAAAAAAAAAAACAAAAAACAAACCAACAACAACAAAAACACCCCAGAAAAT		D	0.999910950661						3-UTR	PPP1R12A	NM_001143886 NM_001244992 NM_002480 NM_001143885 NM_001244990						protein phosphatase 1, regulatory (inhibitor) subunit 12A	HEL	uterus
chr12	88379566	88379566	A	G	rs10858676	N	1.59991312733e-12	0.994209					intronic	C12orf50								SK-MEL-30	testis
chr12	93896765	93896769	CGTGA	CA		D	0.999999761581						3-UTR	MRPL42	NM_014050 NM_172177						mitochondrial ribosomal protein L42	SCLC-21H	adrenal gland
chr12	93897779	93897798	CTTTTTTTTTTCTTATAATC	CTTTTTTTTTTTCTTATAATC		N	0.428226619959						downstream	MRPL42							mitochondrial ribosomal protein L42	SCLC-21H	adrenal gland
chr12	94671922	94671943	CAAAAAAAACAAAACAAAATTC	CAAAAAAACAAAACAAAATTC		N	0.0133595652878						intronic	PLXNC1							plexin C1	U-266/70	appendix
chr12	95775321	95775321	G	T	rs2727667	N	4.0801328538e-08	0.74401					intergenic
chr12	974308	974313	TCCCAT	TCCCCAT		N	0.0738068893552						frameshift substitution	WNK1	NM_213655	9	2172				WNK lysine deficient protein kinase 1	HEL	kidney
chr12	9814782	9814782	A	G	rs4439599	N	1.30517374686e-08	0.858626					intergenic
chr12	990912	990912	A	C	rs956868	N	1.55514317157e-06	0.852835	N	N	N	N	nonsynonymous SNV	WNK1	NM_014823 NM_018979 NM_213655 NM_001184985	11,13,13,13	2425,3166,3922,3946	809,1056,1308,1316	T=>P,T=>P,T=>P,T=>P		WNK lysine deficient protein kinase 1	HEL	kidney
chr12	998365	998365	G	T	rs12828016	N	4.44506840722e-05	0.417532	N	N	N	N	nonsynonymous SNV	WNK1	NM_014823 NM_018979 NM_213655 NM_001184985	19,21,21,21	4683,5424,6180,6204	1561,1808,2060,2068	M=>I,M=>I,M=>I,M=>I		WNK lysine deficient protein kinase 1	HEL	kidney
chr13	100548120	100548122	CAT	CT		D	0.87949937582						ncRNA	LOC101927437
chr13	100548125	100548125	G	T	rs112355223	N	4.11677392549e-05	0.143171					ncRNA	LOC101927437
chr13	108519247	108519270	GGAGAGAGAGAGAGAGAGAGAGAC	GGAGAGAGAGAGAGAGAGAGAC		N	0.000844558642711						5-UTR	FAM155A	NM_001080396						family with sequence similarity 155, member A	SH-SY5Y	cerebral cortex
chr13	111414418	111414418	T	C	rs328791	N	1.48891345475e-07	0.980232					intergenic
chr13	111567531	111567531	C	G	rs7331404	N	0.0121226254851	0.832867					upstream	ANKRD10							ankyrin repeat domain 10	HDLM-2	bone marrow
chr13	111588967	111588967	T	C	rs2391883	N	1.90291444824e-08	0.807508					intergenic
chr13	111747799	111747799	A	G	rs4773322	N	6.01428837288e-11	0.941693					upstream	LINC00368
chr13	111766981	111766981	A	C	rs7321389	N	0.000267971860012	0.595847					ncRNA	ARHGEF7-AS2
chr13	111767056	111767056	G	T	rs9555770	N	0.486632794142	0.337859					ncRNA	ARHGEF7-AS2
chr13	114302293	114302293	G	A	rs9577598	D	0.925638794899	0.474042					downstream	ATP4B							ATPase, H+/K+ exchanging, beta polypeptide	SCLC-21H	stomach
chr13	114302326	114302326	A	G	rs7998172	N	0.00957035832107	0.488618					downstream	ATP4B							ATPase, H+/K+ exchanging, beta polypeptide	SCLC-21H	stomach
chr13	114587161	114587161	T	G	rs7998869	N	4.61231781934e-11	0.848642					upstream	LINC00454
chr13	19319488	19319488	T	A		N	0.00522136641666						intergenic
chr13	19319494	19319495	GT	CC		N	0.00454715592787						intergenic
chr13	19319509	19319509	C	T		N	0.00244606402703						intergenic
chr13	22057796	22057796	G	A	rs2247123	N	2.8171984745e-09	0.972244					intergenic
chr13	26626121	26626138	TCGCCCCGCCCGGCGCCA	TCGCCCGGCGCCA		N	0.486632794142						upstream	SHISA2							shisa homolog 2 (Xenopus laevis)	RH-30	thyroid gland
chr13	28551357	28551357	C	G	rs7989004	N	0.00195175793488	0.204872					downstream	URAD								BEWO	colon
chr13	50159793	50159816	CGCCCCGGCCCCGGCCCCGGCCGA	CGCCCCGGCCCCGGCCCCGGCCCCGGCCGA		N	0.486632794142						upstream	RCBTB1							regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1	REH	thyroid gland
chr13	51796468	51796468	T	C	rs7320388	N	0.00272935442626	1					upstream	FAM124A							family with sequence similarity 124, member A	NTERA-2	spleen
chr13	71870076	71870076	G	A	rs2325357	N	6.65691572976e-08	0.970847					intergenic
chr13	76112312	76112312	C	T	rs7336498	N	0.486632794142	0.961661					intronic	COMMD6							COMM domain containing 6	THP-1	ovary
chr13	79999433	79999433	T	G	rs7338678	N	6.53956431051e-06	0.519569					downstream	RBM26-AS1
chr13	90015578	90015578	A	G	rs2348563	N	2.89031437672e-11	0.78754					intergenic
chr13	98795631	98795631	C	T	rs598590	N	0.000517726293765	0.614417					5-UTR	FARP1	NM_001001715 NM_005766						FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)	Hep-G2	thyroid gland
chr13	99104170	99104170	C	T	rs3742134	N	0.486632794142	0.210863					3-UTR	STK24	NM_003576 NM_001032296 NM_001286649						serine/threonine kinase 24	HDLM-2	esophagus
chr14	101377736	101377736	A	G	rs9324026	N	2.26746233238e-05	0.509984					downstream	MIR370
chr14	103010942	103010942	C	G	rs10137876	N	0.486632794142	0.900359					intergenic
chr14	103375594	103375594	T	A	rs4906271	N	1.04683241242e-11	0.976238					3-UTR	TRAF3	NM_001199427 NM_003300 NM_145725 NM_145726						TNF receptor-associated factor 3	HDLM-2	lymph node
chr14	103590772	103590772	G	A	rs3759573	N	1.46456231745e-17	0.604633					intergenic
chr14	103851089	103851089	A	C	rs10146340	N	5.29557624418e-08	0.966054					upstream	MARK3							MAP/microtubule affinity-regulating kinase 3	U-266/84	bone marrow
chr14	105642138	105642138	C	T	rs880616	N	5.85065995651e-10	0.614217					3-UTR	NUDT14	NM_001318380							HMC-1	adipose tissue
chr14	105952271	105952271	A	G	rs8012089	N	4.47290367447e-05	0.84345					upstream	CRIP1							cysteine-rich protein 1 (intestinal)	A-549	small intestine
chr14	106088023	106088023	T	C	rs6576119	N	2.23351264594e-07	0.860024					downstream	MIR8071-1 MIR8071-2
chr14	106092671	106092671	G	A	rs28495737	N	6.5149430295e-10	0.85623					intergenic
chr14	106107071	106107071	T	C	rs12898162	N	3.98252382183e-08	0.915535					downstream	MIR8071-1 MIR8071-2
chr14	106207725	106207725	T	C	rs17841089	N	0.00107931543607	0.229034					intergenic
chr14	106348131	106348131	A	G	rs3021115	N	1.0851603065e-06	0.75639					intergenic
chr14	106375463	106375463	C	G	rs2854769	N	3.39281496053e-06	1					intergenic
chr14	106375482	106375484	TAG	TG		D	0.997243881226						intergenic
chr14	106376856	106376858	CCT	TCC		N	0.136392831802						intergenic
chr14	106376868	106376868	A	G	rs112435109	N	0.116135880351						intergenic
chr14	106376878	106376880	TGG	AGT		N	0.152472496033						intergenic
chr14	106721143	106721145	ATA	ATTA		D	0.605947971344						intergenic
chr14	106721160	106721167	GTTTGTTA	GTTGTTA		D	0.727490305901						intergenic
chr14	106785554	106785556	ACT	AGCCT		N	0.278172492981						intergenic
chr14	106845002	106845002	G	T	rs10129951	N	4.70161779731e-07	1					intergenic
chr14	106845035	106845037	AAA	TAT		N	0.0854988023639						intergenic
chr14	106937467	106937469	GCA	GCCA		N	0.106639891863						upstream	LINC00221
chr14	19600398	19600398	T	G	rs3000540	N	1.82314225922e-18	0.913139					intergenic
chr14	21110026	21110026	A	G	rs12586851	N	1.58227607017e-07	0.459864					upstream	OR6S1								HDLM-2	spleen
chr14	21169411	21169411	G	A	rs7149524	N	1.08574727165e-06	0.762979					downstream	RNASE4							ribonuclease, RNase A family 4	Hep-G2	liver
chr14	22573443	22573443	C	T	rs4572291	N	8.27176481835e-05	0.228035					intergenic
chr14	22581071	22581071	G	A	rs10130061	N	1.79970080505e-10	0.936502					intergenic
chr14	22958261	22958261	T	C	rs227871	N	1.0648063542e-09	0.978834					intergenic
chr14	22975407	22975407	G	C	rs226993	N	1.40548211958e-10	0.974641					intergenic
chr14	22988748	22988748	G	A	rs227010	N	4.10683567755e-19	0.996406					intergenic
chr14	23005786	23005786	A	C	rs1154156	N	2.4763673423e-07	0.777356					intergenic
chr14	23299009	23299013	GCCGT	GCCCGT		N	0.486632794142						upstream	MRPL52							mitochondrial ribosomal protein L52	Hep-G2	duodenum
chr14	24803956	24803956	A	C	rs1124644	N	7.82183046021e-16	0.818291					5-UTR	ADCY4	NM_001198568						adenylate cyclase 4	TIME	placenta
chr14	24883887	24883887	G	A	rs8017377	N	5.12040628564e-07	0.244409	N	N	N	N	nonsynonymous SNV	NYNRIN	NM_025081	9	2932,978	978	A=>T		NYN domain and retroviral integrase containing	RT-4	ovary
chr14	25736641	25736641	G	T	rs7144269	N	7.33766091798e-06	0.476637					intergenic
chr14	25736652	25736652	C	T	rs7145534	N	5.82176244279e-06	0.476637					intergenic
chr14	28314590	28314590	C	G	rs12887474	N	0.00180865905713	0.298323					intergenic
chr14	28314915	28314915	T	C	rs8021987	N	0.000410088687204	0.265974					intergenic
chr14	28314927	28314927	G	C	rs8015916	N	0.0018084696494	0.298123					intergenic
chr14	29247047	29247066	ATTTTTTTTTTTTTTAGAAC	ATTTTTTTTTTTTTAGAAC		D	0.583061754704						ncRNA	LINC01551
chr14	35032112	35032112	C	T	rs13826	N	2.6640145645e-10	0.435903					3-UTR	SNX6	NM_021249 NM_152233						sorting nexin 6	TIME	placenta
chr14	39653005	39653005	C	T	rs67316582	N	2.29660654441e-05	0.339257					downstream	PNN							pinin	Hep-G2	bone marrow
chr14	51348281	51348306	CTTTTTTTTTTTTTTTTTAAACTTCC	CTTTTTTTTTTTTTTTTTTAAACTTCC		N	0.0121213458478						intronic	ABHD12B								BEWO	skin
chr14	51348281	51348306	CTTTTTTTTTTTTTTTTTAAACTTCC	CTTTTTTTTTTTTTTTTTTTAAACTTCC		N	0.0121213458478						intronic	ABHD12B								BEWO	skin
chr14	65346950	65346950	G	A	rs1951491	N	3.91092762584e-05	0.668131					intergenic
chr14	65346957	65346957	G	T	rs1951490	N	8.95065022632e-05	0.668131					intergenic
chr14	73080618	73080618	T	C	rs2803959	N	2.12015105992e-12	0.759385					intergenic
chr14	74399422	74399422	C	G	rs2336548	N	7.29970633984e-06	0.501597					downstream	FAM161B ZNF410
chr14	75422302	75422302	A	G	rs12885730	N	0.407353997231	0.99381					5-UTR	PGF	NM_001207012 NM_001293643 NM_002632						placental growth factor	BEWO	placenta
chr14	76638586	76638586	T	G	rs4903383	N	9.98676363828e-10	0.997804					3-UTR	GPATCH2L	NM_001322027							CAPAN-2	bone marrow
chr14	76642757	76642757	G	A	rs12437310	N	3.30743023369e-05	0.767971					intronic	GPATCH2L								CAPAN-2	bone marrow
chr14	93686568	93686593	CTTTTTTTTTTTTTTTTTTCCCTAAA	CTTTTTTTTTTTTTTTCCCTAAA		D	0.517147243023						intronic	UBR7							ubiquitin protein ligase E3 component n-recognin 7 (putative)	MOLT-4	testis
chr14	94857892	94857892	C	G	rs2071275	N	1.4520855629e-08	0.66254					upstream	SERPINA1								Hep-G2	liver
chr14	96086843	96086844	GA	AG		N	0.00207338249311						intergenic
chr14	96086855	96086857	TGT	CGG		N	0.000391972513171						intergenic
chr15	100266779	100266779	G	A	rs8034156	N	1.36849004351e-10	0.699281					downstream	LYSMD4							LysM, putative peptidoglycan-binding, domain containing 4	HaCaT	skin
chr15	100347024	100347024	A	G	rs2458579	D	0.501221299171						ncRNA	DNM1P46
chr15	100513372	100513382	ACCTTCCTTCA	ACCTTCA		N	0.131307810545						3-UTR	ADAMTS17	NM_139057						a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 17	HEK-293	testis
chr15	101113700	101113719	CTTTTTTTTTTTTTTGAAAA	CTTTTTTTTTTTTTTTGAAAA		D	0.972981214523						intronic	LINS1
chr15	102264304	102264304	G	C	rs1143138	N	0.140379667282	0.458666	N	N	N		nonsynonymous SNV	TARSL2	NM_152334	1	287,96	96	A=>G		threonyl-tRNA synthetase-like 2	HEK-293	cerebral cortex
chr15	102291955	102291955	G	A	rs397212	N	1.38164431007e-08	0.463458					intergenic
chr15	21931959	21931959	C	G	rs8038596	N	3.21868185438e-07	0.629593					downstream	LOC646214
chr15	22483328	22483328	T	C	rs550604	N	3.11409166898e-05	0.705871					intergenic
chr15	23042870	23042886	CTTTTTTTTTTTTGAGA	CTTTTTTTTTTGAGA		N	0.148495748639						downstream	NIPA1							non imprinted in Prader-Willi/Angelman syndrome 1 homolog (human)	HDLM-2	cerebral cortex
chr15	23115422	23115422	T	C	rs3816074	N	3.77785402961e-09	0.483826					upstream	LOC283683
chr15	24451302	24451302	A	G	rs11161415	N	3.2535790524e-06	0.751198					intergenic
chr15	26122618	26122618	C	T	rs34451068	N	0.0139420684427	0.136382					intergenic
chr15	29412047	29412047	C	T	rs11638181	N	2.82993198653e-07	0.648962					downstream	FAM189A1							family with sequence similarity 189, member A1	HDLM-2	cerebral cortex
chr15	33595506	33595506	A	C	rs2670949	N	1.77183025585e-07	0.822284					downstream	LOC101928134
chr15	35385434	35385434	C	T	rs12916766	N	8.26489554129e-07	0.333866					intergenic
chr15	40601056	40601073	GCTCTCCTCTCTCCTCCG	GCTCTCCTCCG		N	0.0207275692374						upstream	PLCB2							phospholipase C, beta 2	HMC-1	spleen
chr15	40643043	40643084	TCACACACACACACACACACACACACACACACACACACACAT	TCACACACACACACACACACACACACACACACACAT		N	0.000329483300447						upstream	PHGR1								SCLC-21H	colon
chr15	40650296	40650296	G	A	rs12901268	N	0.486632794142	0.00599042					upstream	DISP2							dispatched homolog 2 (Drosophila)	SCLC-21H	cerebral cortex
chr15	40845302	40845302	G	A	rs8042729	N	0.00505629042163	0.349441					3-UTR	C15orf57	NM_001080791 NM_001080792 NM_052849							HEL	lymph node
chr15	42118123	42118123	G	C	rs3179542	N	2.39311702899e-07	0.296126					3-UTR	MAPKBP1	NM_001128608 NM_001265611 NM_014994						mitogen-activated protein kinase binding protein 1	HaCaT	testis
chr15	42265396	42265396	G	T	rs72726040	N	0.00765493465587	0.125					ncRNA	PLA2G4E-AS1
chr15	44877800	44877829	TAAAAAAAAAAAAAAAAAAAAAGACCGATG	TAAAAAAAAAAAAAAAAAAAAGACCGATG		D	0.968203365803						intronic	SPG11							spastic paraplegia 11	K-562	skin
chr15	44877800	44877829	TAAAAAAAAAAAAAAAAAAAAAGACCGATG	TAAAAAAAAAAAAAAAAAAAGACCGATG		D	0.968203365803						intronic	SPG11							spastic paraplegia 11	K-562	skin
chr15	45983936	45983941	GTTCTA	GTTCTTCTA		N	0.00135528098326						downstream	SQRDL							sulfide quinone reductase-like (yeast)	U-2197	colon
chr15	49263951	49263951	G	A	rs12324356	N	3.72997078557e-07	0.544329					intergenic
chr15	52640990	52641011	TAAAAAAAAAAAAAGGTATAAT	TAAAAAAAAAAAAAAGGTATAAT		N	0.267063766718						intronic	MYO5A							myosin VA	Karpas-707	cerebral cortex
chr15	59949770	59949770	A	C	rs7163436	N	0.486632794142	0.998403					upstream	GTF2A2							general transcription factor II A, 2	U-2-OS	testis
chr15	62534495	62534497	ATG	AG		N	0.0163839645684						downstream	GOLGA2P11
chr15	62534500	62534500	T	G	rs4989098	N	1.67086545844e-05	0.491813					downstream	GOLGA2P11
chr15	63390608	63390608	C	T	rs11071725	N	2.76114825448e-10	0.726837					intergenic
chr15	69715488	69715488	C	T	rs7180624	N	3.31159144551e-09	0.987819					intronic	KIF23							kinesin family member 23	RH-30	bone marrow
chr15	70078624	70078624	T	C	rs305034	N	7.65081509257e-09	0.866014					intergenic
chr15	70340511	70340511	G	A	rs3743309	N	8.33270730194e-10	0.725639					3-UTR	TLE3	NM_001282982 NM_001282981 NM_001105192 NM_001282979 NM_001282980 NM_005078 NM_020908						transducin-like enhancer of split 3, homolog of Drosophila E(spl)	U-266/70	bone marrow
chr15	72070929	72070929	G	A	rs7402189	N	5.26558267211e-07	0.824081					3-UTR	THSD4	NM_024817 NM_001286429						thrombospondin, type I, domain containing 4	TIME	esophagus
chr15	73976917	73976925	AGGGCGCCT	AGGGGCGCCT		N	0.206558898091						intronic	CD276								U-2197	placenta
chr15	75312715	75312715	C	G	rs3812943	N	1.45834783325e-05	0.206669					3-UTR	SCAMP5	NM_001178111 NM_001178112 NM_138967							SCLC-21H	cerebral cortex
chr15	76497999	76497999	T	C	rs2456043	N	5.77665026924e-08	0.961661					downstream	TMEM266
chr15	78114116	78114116	T	C	rs4886921	N	2.17123215407e-05	0.735024					upstream	LINGO1							leucine rich repeat and Ig domain containing 1	NTERA-2	cerebral cortex
chr15	78186683	78186683	G	C	rs4886536	N	1.35739292091e-05	0.796326					intergenic
chr15	78219278	78219278	C	T	rs9920783	N	0.000306611473206	0.105631					upstream	LOC645752
chr15	78236929	78236929	A	G	rs11072703	N	0.486632794142	0.766374					intergenic
chr15	78397349	78397355	CTTTGGG	CTTGGG		N	0.23698951304						3-UTR	CIB2	NM_001271888 NM_001271889 NM_001301224 NM_006383						calcium and integrin binding family member 2	SH-SY5Y	small intestine
chr15	78397349	78397355	CTTTGGG	CTTGGT		N	0.23698951304						3-UTR	CIB2	NM_001271888 NM_001271889 NM_001301224 NM_006383						calcium and integrin binding family member 2	SH-SY5Y	small intestine
chr15	78471320	78471320	C	G	rs2868606	N	8.1803221974e-09	1					intronic	ACSBG1							acyl-CoA synthetase bubblegum family member 1	NTERA-2	cerebral cortex
chr15	78790735	78790749	TGGGGGGGGGGCGAT	TGGGGGGGGGCGAT		D	0.975225627422						3-UTR	IREB2	NM_001320941 NM_004136 NM_001320942						iron responsive element binding protein 2	U-266/84	thyroid gland
chr15	89173657	89173657	A	T	rs3826038	N	5.89778448301e-10	0.749601					3-UTR	AEN	NM_022767						apoptosis enhancing nuclease	NTERA-2	gallbladder
chr15	89860350	89860350	A	C	rs1061316	N	7.44538483559e-05	0.445887					3-UTR	FANCI	NM_001113378 NM_018193					FANCONI ANEMIA, COMPLEMENTATION GROUP I	Fanconi anemia, complementation group I	HEL	testis
chr15	90624521	90624527	GAAATAG	GAATAG		N	0.168397068977						3-UTR	ZNF710	NM_198526							SK-BR-3	pancreas
chr15	90809269	90809271	CTG	CG		N	0.486632794142						intronic	NGRN								U-266/84	cerebral cortex
chr15	90895564	90895564	A	C	rs1869179	N	0.486632794142	0.689497					5-UTR	ZNF774	NM_001004309							CACO-2	colon
chr15	90931363	90931363	C	T	rs2589940	N	0.486632794142	0.677716					upstream	IQGAP1							IQ motif containing GTPase activating protein 1	RT-4	colon
chr15	93487854	93487854	G	C	rs1320819	N	0.00010359891894	0.5627					intronic	CHD2							chromodomain helicase DNA binding protein 2	SK-MEL-30	bone marrow
chr15	93588030	93588030	T	C	rs1969589	N	6.29569626653e-07	0.772364					3-UTR	RGMA	NM_001166286 NM_001166288 NM_001166289 NM_001166283 NM_001166287 NM_020211						RGM domain family, member A	NTERA-2	cerebral cortex
chr15	94774711	94774713	TAG	TAAG		N	0.0930556952953						intergenic
chr15	97326748	97326748	G	T	rs12911590	N	1.05752395729e-09	0.57528					5-UTR	SPATA8	NM_001304804 NM_001304805 NM_001304806 NM_173499							U-2-OS	testis
chr15	99192754	99192786	CTTTTTTTTTTTTTTTTTTTTTTTTGAGAAAGG	CTTTTTTTTTTTTTTTGAGAAAGG		N	0.00229244329967						ncRNA	IRAIN
chr16	1021266	1021266	G	A	rs2432296	N	0.252348601818	0.522364					upstream	LMF1								RPMI-8226	pancreas
chr16	11036624	11036624	A	G	rs3087876	N	0.0138893304393	0.554912					upstream	DEXI							dexamethasone-induced transcript	Hep-G2	adrenal gland
chr16	1116220	1116227	TGGGGGAC	TGGGGGGAC		N	0.000107412844955						ncRNA	SSTR5-AS1
chr16	1116445	1116445	A	G	rs530518	N	4.37768155059e-10	0.963259					ncRNA	SSTR5-AS1
chr16	1129872	1129872	C	T	rs169068	N	1.16559722301e-05	0.518171	N	N	N	N	nonsynonymous SNV	SSTR5	NM_001053 NM_001172560	1,2	1004,1004	335,335	P=>L,P=>L		somatostatin receptor 5	PC-3	adrenal gland
chr16	1131181	1131181	C	T	rs12599155	N	3.88031594412e-06	0.41873					3-UTR	SSTR5	NM_001172560 NM_001053						somatostatin receptor 5	PC-3	adrenal gland
chr16	1161148	1161148	C	T	rs2729584	N	0.000917763682082	0.25619					intergenic
chr16	12009530	12009563	CCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCA	CCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCA		N	0.486632794142						nonframeshift substitution	GSPT1	NM_002094 NM_001130006	1,1	15,15				G1 to S phase transition 1	SiHa	testis
chr16	12664063	12664063	G	A	rs890894	N	2.01968894942e-08	0.533946					3-UTR	SNX29	NM_032167						sorting nexin 29	U-266/84	kidney
chr16	1358608	1358629	ATGAGGGAGGGAGGGAATTAGT	AT		N	0.0845147147775						upstream	UBE2I							ubiquitin-conjugating enzyme E2I	REH	ovary
chr16	1377420	1377420	C	T	rs113064632	N	9.42664883041e-06	0.034345					downstream	UBE2I							ubiquitin-conjugating enzyme E2I	REH	ovary
chr16	1391871	1391871	C	G	rs2369699	N	3.89591967576e-08	0.583067					intronic	BAIAP3							BAI1-associated protein 3	CAPAN-2	adrenal gland
chr16	1414498	1414498	C	T	rs3826051	N	5.77800019528e-05	0.326078					3-UTR	UNKL	NM_001193389 NM_001276414 NM_001193388						unkempt-like (Drosophila)	HeLa	spleen
chr16	14402265	14402265	T	C	rs30231	N	5.1282715433e-24	0.757788					ncRNA	MIR193BHG
chr16	1484325	1484325	C	G		N	0.000140707736136	0.00159744					downstream	CCDC154							coiled-coil domain containing 154	SCLC-21H	testis
chr16	1484348	1484348	T	G	rs7196951	N	8.42815134092e-05	0.188698					downstream	CCDC154							coiled-coil domain containing 154	SCLC-21H	testis
chr16	1484385	1484385	C	A	rs78398531	N	6.98506482877e-05	0.125599					downstream	CCDC154							coiled-coil domain containing 154	SCLC-21H	testis
chr16	1485243	1485243	A	G	rs9927318	N	0.000611219147686	0.226637					intronic	CCDC154							coiled-coil domain containing 154	SCLC-21H	testis
chr16	1485255	1485255	A	G	rs9927323	N	0.000785862153862	0.220647					intronic	CCDC154							coiled-coil domain containing 154	SCLC-21H	testis
chr16	15068908	15068908	C	G	rs28418438	N	0.486632794142	0.429313					5-UTR	PDXDC1	NM_001285450 NM_001285444 NM_001285445 NM_001324019 NM_015027 NM_001285449 NM_001324020 NM_001324021						pyridoxal-dependent decarboxylase domain containing 1	HMC-1	testis
chr16	15111218	15111218	C	T	rs4985162	N	0.435912489891		N	N	N	N	nonsynonymous SNV	PDXDC1	NM_001285450 NM_001285447 NM_001285448 NM_001285445 NM_015027 NM_001285449 NM_001285444	10,11,10,10,11,11,10	833,857,629,818,902,902,821	278,286,210,273,301,301,274	P=>L,P=>L,P=>L,P=>L,P=>L,P=>L,P=>L		pyridoxal-dependent decarboxylase domain containing 1	HMC-1	testis
chr16	15132108	15132108	A	G	rs2740	N	0.00635829335079	0.339856					3-UTR	PDXDC1	NM_001285447 NM_001285448 NM_001285444 NM_001285445 NM_001324019 NM_015027						pyridoxal-dependent decarboxylase domain containing 1	HMC-1	testis
chr16	15198405	15198407	GTG	ATT		N	0.000188499208889						ncRNA	PKD1P6-NPIPP1
chr16	15818310	15818310	G	A	rs11130	N	7.51396498799e-07	0.504992					3-UTR	NDE1	NM_001143979 NM_017668							Karpas-707	lymph node
chr16	1583634	1583634	T	C	rs8048206	N	0.486632794142	0.23762					intronic	IFT140 TMEM204
chr16	15876448	15876448	T	G		N	1.45490419712e-09	0.00139776					intronic	MYH11							myosin, heavy polypeptide 11, smooth muscle	U-698	esophagus
chr16	1592087	1592087	T	C	rs2076444	N	4.43311091658e-06	0.33746					intronic	IFT140 TMEM204
chr16	16232201	16232214	GTTTTTTTCTTCCG	GTTTTTTCTTCCG		D	0.550979316235						intronic	ABCC1							ATP-binding cassette, sub-family C (CFTR/MRP), member 1	A-549	testis
chr16	16730375	16730375	T	A	rs1380142	N	7.2838122378e-07	0.620607					intergenic
chr16	17047354	17047354	G	A	rs74867405	N	2.01825150725e-05	0.0251597					intergenic
chr16	17432427	17432427	T	C	rs4782002	N	8.62941669766e-05	0.34385					intronic	XYLT1							xylosyltransferase 1	U-2197	cerebral cortex
chr16	17564658	17564658	G	C	rs117041807	N	0.486632794142	0.0814696					5-UTR	XYLT1	NM_022166						xylosyltransferase 1	U-2197	cerebral cortex
chr16	1821146	1821146	G	A	rs200014489	N	0.0139602124691	0.00698882					synonymous SNV	NME3	NM_002513	3	204	68	H=>H		NME/NM23 nucleoside diphosphate kinase 3	HEK-293	prostate
chr16	1822159	1822159	T	C	rs2269123	N	0.000988146755844	0.148962					3-UTR	MRPS34	NM_001300900 NM_023936						mitochondrial ribosomal protein S34	HEK-293	duodenum
chr16	1823024	1823024	G	T	rs11552431	N	0.486632794142	0.145966	D	N	N	N	nonsynonymous SNV	MRPS34	NM_023936 NM_001300900	1,1	97,97	33,33	L=>I,L=>I		mitochondrial ribosomal protein S34	HEK-293	duodenum
chr16	1844733	1844733	A	G	rs34679887	N	0.0010336805135	0.0435304					upstream	IGFALS						ACID-LABILE SUBUNIT DEFICIENCY	insulin-like growth factor binding protein, acid labile subunit	Hep-G2	liver
chr16	1859150	1859153	GAAT	AAAC		N	0.00188325403724						3-UTR	HAGH	NM_001040427 NM_001286249 NM_005326						hydroxyacyl glutathione hydrolase	EFO-21	liver
chr16	1876949	1876949	G	C	rs7188401	N	0.486632794142	0.39397					5-UTR	HAGH	NM_001040427 NM_001286249 NM_005326						hydroxyacyl glutathione hydrolase	EFO-21	liver
chr16	188614	188617	ACGC	AG		N	0.486632794142						5-UTR	NPRL3	NM_001039476 NM_001243248 NM_001243249						nitrogen permease regulator-like 3	MCF-7	ovary
chr16	19315621	19315621	C	G	rs16971804	N	1.06441148091e-05	0.307109					intronic	CLEC19A
chr16	19619602	19619623	CTTTTTTTTTTTTTTGGTCTGA	CTTTTTTTTTTTTTTTGGTCTGA		D	0.997928500175						intronic	C16orf62								EFO-21	testis
chr16	19619602	19619623	CTTTTTTTTTTTTTTGGTCTGA	CTTTTTTTTTTTTTTTTGGTCTGA		D	0.997928500175						intronic	C16orf62								EFO-21	testis
chr16	1969214	1969214	T	C		N	0.00302076432854	0.00299521					upstream	HS3ST6							heparan sulfate (glucosamine) 3-O-sulfotransferase 6	A-549	skin
chr16	19868687	19868687	G	C	rs2729	N	3.56496429599e-12	0.98762					3-UTR	IQCK	NM_001305121 NM_001305122 NM_153208						IQ motif containing K	MCF-7	thyroid gland
chr16	2034137	2034137	C	T	rs56119017	N	0.486632794142	0.136382					upstream	GFER							growth factor, erv1 (S. cerevisiae)-like (augmenter of liver regeneration)	SK-BR-3	small intestine
chr16	20361087	20361089	TTC	TTCTGCCAGATC		N	0.0185112785548						intronic	UMOD							uromodulin	EFO-21	kidney
chr16	20430769	20430769	C	T	rs77322809	N	5.79893203394e-05	0.00958466					3-UTR	ACSM5	NM_001324373						acyl-CoA synthetase medium-chain family member 5	U-87-MG	liver
chr16	2049882	2049899	GTCCTCCTCCTCCTCCTG	GTCCTCCTCCTCCTCCTCCTG		D	0.997363984585						nonframeshift substitution	ZNF598	NM_178167	11	1651					HEK-293	spleen
chr16	2050192	2050192	G	T	rs11556528	N	3.55705628863e-06	0.126997	N	D	P	N	nonsynonymous SNV	ZNF598	NM_178167	11	1358	453	S=>Y			HEK-293	spleen
chr16	2069750	2069750	A	C		N	0.00576127879322						5-UTR	NPW	NM_001099456							SCLC-21H	liver
chr16	21289626	21289626	C	G	rs3848259	N	0.486632794142	0.102236					5-UTR	CRYM	NM_001888					DEAFNESS, AUTOSOMAL DOMINANT NONSYNDROMIC	crystallin, mu	HEL	heart muscle
chr16	2144182	2144182	G	A	rs45478794	N	1.98013808017e-07	0.0383387	D	P	N	N	nonsynonymous SNV	PKD1	NM_000296 NM_001009944	35,35	10526,10529	3509,3510	T=>M,T=>M	POLYCYSTIC KIDNEY DISEASE 1	polycystic kidney disease 1 homolog	HeLa	skin
chr16	2213760	2213762	GTG	GTTG		N	1.91643412109e-05						intronic	TRAF7							TNF receptor-associated factor 7	MCF-7	duodenum
chr16	22345191	22345191	G	A	rs7764	N	0.00202640821226	0.448882					3-UTR	POLR3E	NM_001258033 NM_001258034 NM_001258035 NM_001258036 NM_018119						polymerase (RNA) III (DNA directed) polypeptide E	Hep-G2	skin
chr16	22346882	22346913	GGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAC	GGAGAGAGAGAGAGAGAGAGAGAGAGAGAC		N	0.00746274413541						downstream	POLR3E							polymerase (RNA) III (DNA directed) polypeptide E	Hep-G2	skin
chr16	23079353	23079353	T	C	rs8047644	N	2.14462531067e-10	0.889177					3-UTR	USP31	NM_020718						ubiquitin specific peptidase 31	RT-4	testis
chr16	231167	231167	C	T	rs3929997	D	0.552061498165	0.034345					3-UTR	HBQ1	NM_005331							K-562	bone marrow
chr16	231486	231486	C	G	rs143741293	N	0.486632794142	0.0175719					downstream	HBQ1								K-562	bone marrow
chr16	23160800	23160800	G	C	rs373063806	N	0.486632794142	0.00139776					upstream	USP31							ubiquitin specific peptidase 31	RT-4	testis
chr16	23193865	23193865	A	G	rs5718	N	0.486632794142	0.66873					upstream	SCNN1G						LIDDLE SYNDROME	sodium channel, nonvoltage-gated 1 gamma	RT-4	kidney
chr16	23607892	23607892	G	A	rs460186	N	0.0276801940054	0.141573					upstream	NDUFAB1								Hep-G2	heart muscle
chr16	23646191	23646191	T	C	rs152451	N	0.0579698197544	0.150759	N	N	N	N	nonsynonymous SNV	PALB2	NM_024675	4	1676	559	Q=>R	BREAST CANCER, SUSCEPTIBILITY TO	partner and localizer of BRCA2	NTERA-2	testis
chr16	23701538	23701538	A	G	rs27770	N	0.000703283702023	0.234425					3-UTR	PLK1	NM_005030						polo-like kinase 1	Hep-G2	lymph node
chr16	23711925	23711925	C	G	rs26764	N	4.61009176433e-06	0.434704	N	N	N	N	nonsynonymous SNV	ERN2	NM_033266 NM_001308220	13,12	1460,1304	487,435	S=>T,S=>T		endoplasmic reticulum (ER) to nucleus signalling 2	CAPAN-2	stomach
chr16	24202786	24202786	T	A	rs198146	N	7.98105520516e-06	0.436901					intronic	PRKCB							protein kinase C, beta	K-562	cerebral cortex
chr16	24231449	24231449	C	T	rs424741	N	0.000348571687937	0.0351438					3-UTR	PRKCB	NM_002738 NM_212535						protein kinase C, beta	K-562	cerebral cortex
chr16	24564879	24564898	GTATATATATATATATATTC	GTATATATATATATATTC		D	0.83414876461						intronic	RBBP6							retinoblastoma binding protein 6	REH	bone marrow
chr16	25069545	25069545	T	C	rs10852280	N	9.96911211359e-08	0.805312					intergenic
chr16	2510603	2510603	C	T	rs4786284	N	0.000271676806733	0.690695					intronic	C16orf59								REH	testis
chr16	2512542	2512542	G	C	rs72768722	N	0.000376281677745	0.013778					intronic	C16orf59								REH	testis
chr16	25703137	25703144	TGGGGGCT	TGGGGGGCT		N	0.000532311969437						upstream	HS3ST4							heparan sulfate (glucosamine) 3-O-sulfotransferase 4	NTERA-2	cerebral cortex
chr16	25703477	25703502	AGGGGGGGGCGGTGGTGGGGGGGCCA	AGGGGGGGCGGTGGTGGGGGGGCCA		D	0.531572878361						5-UTR	HS3ST4	NM_006040						heparan sulfate (glucosamine) 3-O-sulfotransferase 4	NTERA-2	cerebral cortex
chr16	2642822	2642822	C	T	rs72768734	N	0.0056894691661	0.0111821					intronic	PDPK1							3-phosphoinositide dependent protein kinase 1	REH	cerebral cortex
chr16	2821573	2821573	C	T	rs8017	N	4.14960774076e-11	0.413738	N	N	N		nonsynonymous SNV	TCEB2	NM_207013	5	386	129	S=>N			MCF-7	heart muscle
chr16	2821763	2821763	C	G	rs1058855	N	0.058036532253	0.290735					3-UTR	TCEB2	NM_007108							MCF-7	heart muscle
chr16	2834826	2834826	A	G	rs12931183	N	3.66838469323e-11	0.599042					intronic	PRSS33								SK-MEL-30	salivary gland
chr16	2837592	2837592	T	G	rs34341809	N	1.14784826089e-09	0.521965					upstream	PRSS33								SK-MEL-30	salivary gland
chr16	2837603	2837603	C	T	rs11076829	N	1.04745467855e-09	0.493211					upstream	PRSS33								SK-MEL-30	salivary gland
chr16	2871121	2871121	T	C	rs11076844	N	3.57456499955e-08	0.726637					intronic	PRSS21							protease, serine, 21	U-698	testis
chr16	2879279	2879279	T	C	rs4785908	N	1.22710060115e-16	0.71885					upstream	ZG16B								MCF-7	salivary gland
chr16	2892961	2892961	A	G	rs17659759	N	0.000442391523393	0.0974441					upstream	PRSS30P
chr16	28979263	28979263	A	G	rs12934960	N	0.00011539922707	0.301717					intergenic
chr16	2902431	2902431	A	G	rs7186326	N	2.31457131239e-10	0.516773					downstream	PRSS22							protease, serine, 22	CAPAN-2	esophagus
chr16	2917807	2917807	T	G	rs875177	N	0.000176118148374	0.796925					intergenic
chr16	2932431	2932431	C	G	rs6500686	N	1.67587836586e-06	0.797724					upstream	FLYWCH2							FLYWCH family member 2	MCF-7	spleen
chr16	29823342	29823342	T	C	rs8054524	N	0.0136215332896	0.991414					upstream,downstream	PRRT2;MAZ
chr16	29826538	29826538	T	C	rs10204	N	9.01963052857e-12	0.78155					3-UTR	PRRT2	NM_001256442 NM_001256443 NM_145239							REH	cerebral cortex
chr16	30004237	30004237	G	A		D	0.999479472637	0.000199681					3-UTR	HIRIP3	NM_001197323 NM_003609						HIRA interacting protein 3	REH	testis
chr16	30034524	30034524	T	C	rs4788213	N	3.55377665073e-08	0.440695					upstream	C16orf92								SCLC-21H	testis
chr16	30048553	30048553	C	T	rs35467921	N	5.06191042859e-07	0.223243					intergenic
chr16	3005242	3005242	G	A	rs190494475	N	0.000157392409164						intergenic
chr16	30075255	30075255	C	T		N	0.0342299677432	0.000199681					5-UTR	ALDOA	NM_000034						aldolase A, fructose-bisphosphate	MCF-7	heart muscle
chr16	3051123	3051123	T	C	rs1859378	N	2.58316978918e-10	0.709265					downstream	LOC101929613
chr16	3062553	3062553	A	G	rs2231605	N	1.51296128403e-10	0.991414					5-UTR	CLDN9	NM_020982							MCF-7	pancreas
chr16	30960507	30960507	T	C	rs4889582	N	0.019414646551	0.98742					5-UTR	ORAI3	NM_152288						ORAI calcium release-activated calcium modulator 3	U-266/70	prostate
chr16	313406	313406	A	G	rs7189326	N	0.0119034638628	0.400958					intronic	FAM234A
chr16	31404467	31404467	T	G	rs8050328	N	3.0379214877e-07	0.50599					upstream	ITGAD							integrin, alpha D	NB-4	spleen
chr16	3140653	3140653	A	C		N	5.1345580232e-07	0.00139776					intronic	ZSCAN10							zinc finger and SCAN domain containing 10	NTERA-2	bone marrow
chr16	3174545	3174545	A	G	rs443540	N	0.151759624481	0.764577					downstream	ZNF213-AS1
chr16	3192651	3192651	T	C	rs1053996	N	3.2527033909e-05	0.352636					3-UTR	ZNF213	NM_004220 NM_001134655							MCF-7	testis
chr16	319725	319725	T	C	rs740000	N	4.27021541327e-06	0.339856					intronic	RGS11							regulator of G-protein signaling 11	SCLC-21H	cerebral cortex
chr16	3200881	3200881	C	G	rs2238386	N	0.486632794142	0.263978					downstream	CASP16P
chr16	320759	320759	C	T	rs9806942	N	3.62967966794e-07	0.148163	D	D	D	N	nonsynonymous SNV	RGS11	NM_003834 NM_001286486 NM_183337 NM_001286485	14,12,14,13	988,499,1051,1018	330,167,351,340	V=>M,V=>M,V=>M,V=>M		regulator of G-protein signaling 11	SCLC-21H	cerebral cortex
chr16	3219987	3220011	TTTTGTTTGTTTGTTTGTTTTTGAG	TTTTGTTTGTTTGTTTGTTTGTTTTTGAG		N	0.476261109114						intergenic
chr16	322934	322934	C	T	rs9940585	N	3.05489811581e-05	0.551917					intronic	RGS11							regulator of G-protein signaling 11	SCLC-21H	cerebral cortex
chr16	3240254	3240254	T	C	rs412836	N	2.98056685161e-15	0.991214					intergenic
chr16	324030	324038	TGGGGGGTC	TGGGGGGGTC		N	0.000109447413706						intronic	RGS11							regulator of G-protein signaling 11	SCLC-21H	cerebral cortex
chr16	3254470	3254470	T	C	rs1834026	N	2.18713867071e-05	0.431909	N	N	N	N	nonsynonymous SNV	OR1F1	NM_012360	1	224	75	F=>S			THP-1	testis
chr16	326174	326174	G	A	rs12921293	N	0.00692947767675						upstream	RGS11							regulator of G-protein signaling 11	SCLC-21H	cerebral cortex
chr16	3265428	3265428	G	C	rs579134	N	9.11498253178e-14	0.723442					upstream	OR1F2P
chr16	3266071	3266071	A	G	rs2550401	N	9.83392993703e-08	0.445487					ncRNA	OR1F2P
chr16	3294154	3294173	GTTTTTTTTTTTGTCTTCTA	GTTTTTTTTTTGTCTTCTA		N	0.194033399224						intronic	MEFV						FAMILIAL MEDITERRANEAN FEVER	Mediterranean fever	THP-1	appendix
chr16	3304449	3304449	C	G		N	0.486632794142		D	D	D	N	nonsynonymous SNV	MEFV	NM_000243	2	619	207	A=>P	FAMILIAL MEDITERRANEAN FEVER	Mediterranean fever	THP-1	appendix
chr16	337421	337421	A	C	rs377220	N	4.09395228829e-09	0.998003					downstream	AXIN1 PDIA2
chr16	33752121	33752121	C	G	rs2549408	N	4.43689618379e-09	0.997204					intergenic
chr16	33923279	33923279	C	A	rs79230281	D	1.0						intergenic
chr16	33960691	33960691	A	C	rs77049061	D	1.0						downstream	LINC00273
chr16	33964433	33964434	CC	CA		D	0.999908089638						intergenic
chr16	33964433	33964434	CC	TG		D	0.999908089638						intergenic
chr16	33964455	33964457	CGC	TGT		D	0.999992370605						intergenic
chr16	33964528	33964545	AGGGGGGGAGAGAGAGAC	AGAGGGGGGAGAGAGAGAC		D	1.0						intergenic
chr16	33964714	33964718	TGCCG	CGCCA		D	0.99998486042						intergenic
chr16	33964793	33964795	TTG	TCGCTG		D	1.0						intergenic
chr16	33964805	33964807	CCG	CCA		N	0.486632794142						intergenic
chr16	33964805	33964807	CCG	TCA		N	0.486632794142						intergenic
chr16	33965090	33965090	G	A		D	1.0						intergenic
chr16	33965898	33965900	GGA	AGG		D	0.999991059303						intergenic
chr16	33965898	33965900	GGA	GGG		D	0.999991059303						intergenic
chr16	33966036	33966036	A	G	rs77569093	D	0.999997973442						intergenic
chr16	33966062	33966063	CC	AT		D	0.999998569489						intergenic
chr16	3558389	3558389	C	T	rs79133712	N	0.0014257900184	0.0549121	D	D	D	N	nonsynonymous SNV	CLUAP1	NM_015041	4	320	107	A=>V			CAPAN-2	testis
chr16	4166701	4166701	C	G	rs2530895	N	0.142872497439	1					upstream	ADCY9							adenylate cyclase 9	EFO-21	thyroid gland
chr16	417281	417281	G	A	rs62032959	N	4.041009106e-06	0.213658					downstream	MRPL28							mitochondrial ribosomal protein L28	MCF-7	testis
chr16	417289	417289	C	T	rs62033860	N	9.61128716881e-06	0.213658					downstream	MRPL28							mitochondrial ribosomal protein L28	MCF-7	testis
chr16	4180244	4180244	C	T	rs373416	N	3.30733723786e-06	0.321885					intergenic
chr16	4180274	4180274	T	C	rs443271	N	1.30461876324e-05	0.322284					intergenic
chr16	4180291	4180291	G	A	rs400816	N	3.40726473951e-05	0.322284					intergenic
chr16	4180337	4180337	G	A	rs413580	N	3.05601770378e-06	0.321685					intergenic
chr16	4180371	4180371	C	T	rs395738	N	8.4689763753e-06	0.321885					intergenic
chr16	420678	420678	C	T	rs3743884	N	0.486632794142	0.597244					upstream,downstream	MRPL28;TMEM8A
chr16	422516	422516	T	G	rs62030794	N	0.19125752151	0.146366					intronic	TMEM8A								CACO-2	placenta
chr16	4233796	4233796	G	C	rs4786462	N	0.486632794142	0.203075					intergenic
chr16	424277	424277	G	A	rs3743887	N	0.000141893979162	0.143171	N	P	P	N	nonsynonymous SNV	TMEM8A	NM_021259	10	1699	567	R=>W			CACO-2	placenta
chr16	426432	426432	T	C	rs2071915	N	1.7407554509e-08	0.532548	N	N	N	N	nonsynonymous SNV	TMEM8A	NM_021259	6	928	310	I=>V			CACO-2	placenta
chr16	4432029	4432029	A	C	rs3810818	N	1.40289432693e-06	0.686302	N	N	N	N	nonsynonymous SNV	VASN	NM_138440	2	1151	384	E=>A			U-2197	placenta
chr16	4445327	4445327	C	T	rs3747579	N	0.000528538832441	0.507388	D	D	D	N	nonsynonymous SNV	CORO7 CORO7-PAM16	NM_024535 NM_001201479 NM_001201473 NM_001201472	7,7,5,7	578,578,323,524	193,193,108,175	R=>Q,R=>Q,R=>Q,R=>Q
chr16	4475868	4475868	A	T	rs2304631	N	0.486632794142	0.663738					5-UTR	DNAJA3	NM_001135110 NM_001286516 NM_005147						DnaJ (Hsp40) homolog, subfamily A, member 3	RPMI-8226	heart muscle
chr16	4526292	4526292	A	G	rs2270363	N	0.486632794142	0.682907					intronic	HMOX2								MCF-7	testis
chr16	49969963	49969963	C	T	rs4785369	N	1.74923997065e-07	0.534545					intergenic
chr16	5097947	5097947	A	G	rs1127920	N	3.30695888806e-06	0.226038	N	P	N	N	nonsynonymous SNV	C16orf89	NM_152459 NM_001098514	7,7	887,887	296,296	L=>S,L=>S			NTERA-2	thyroid gland
chr16	51186025	51186025	C	G	rs62039688	N	0.0760909169912	0.478435					upstream	SALL1							sal-like 1 (Drosophila)	NTERA-2	kidney
chr16	5289002	5289002	G	C	rs11648387	N	2.69249872398e-10	0.953474					intergenic
chr16	55357681	55357681	G	A	rs2588994	N	0.123622700572	0.312101					upstream	IRX6							Iroquois related homeobox 6 (Drosophila)	SK-MEL-30	adipose tissue
chr16	55809305	55809305	A	C	rs28458414	N	8.34601848965e-07	0.650958					downstream	CES1P1
chr16	56700578	56700580	CTA	CTTTA		D	0.936779558659						downstream	MT1G								U-937	thyroid gland
chr16	570454	570454	T	C	rs11863276	N	6.96446207371e-08	0.791534					intronic	RAB11FIP3							RAB11 family interacting protein 3 (class II)	REH	kidney
chr16	57050809	57050809	A	G	rs16942393	N	3.16084765473e-06	0.491813					upstream	NLRC5								NB-4	spleen
chr16	58782859	58782859	A	G	rs1657167	N	5.65371101402e-06	0.679912					intergenic
chr16	59200735	59200735	G	A	rs11648712	N	1.26778268168e-05	0.391973					intergenic
chr16	65210604	65210604	G	C	rs8061375	N	8.0440175354e-11	0.747204					upstream	LOC101927650
chr16	65610549	65610549	T	C	rs10852425	N	2.03470951199e-09	0.828674					upstream	LINC00922
chr16	679241	679241	G	T	rs17555255	N	0.199086502194	0.00579073					3-UTR	RAB40C	NM_001172663 NM_001172664 NM_001172665 NM_001172666 NM_021168						Rab40c, member RAS oncogene family	MCF-7	skin
chr16	70011947	70011949	CTG	CTATG		N	0.193620219827						ncRNA	PDXDC2P
chr16	70835099	70835099	G	A	rs8054131	N	0.486632794142	0.692093					upstream,downstream	VAC14;HYDIN
chr16	72153518	72153518	G	A	rs186286	N	1.64396674052e-08	0.973243					intronic	PMFBP1							polyamine modulated factor 1 binding protein 1	SCLC-21H	testis
chr16	74455302	74455302	A	G	rs3851723	N	0.486632794142						5-UTR	CLEC18B	NM_001011880							K-562	kidney
chr16	74808737	74808737	C	G	rs8056865	N	0.0620700195432	0.685104					upstream	FA2H							fatty acid 2-hydroxylase	A-549	stomach
chr16	74877956	74877956	A	G	rs7189084	N	8.13342992956e-09	0.727037					intergenic
chr16	810844	810844	T	A	rs145097314	N	0.0608939193189	0.0061901					intronic	MSLN							mesothelin	CAPAN-2	lung
chr16	818452	818452	G	A	rs150425699	N	0.486632794142	0.0061901	D	N	N	N	nonsynonymous SNV	MSLN	NM_005823 NM_013404	17,16	1670,1694	557,565	R=>H,R=>H		mesothelin	CAPAN-2	lung
chr16	820328	820328	A	C	rs3765328	N	1.97208276376e-08	0.476438					downstream	MIR662
chr16	820888	820888	T	C	rs12599339	N	2.20236943278e-05	0.370407	N	N	N	N	downstream	MIR662
chr16	824837	824838	CG	TA		N	0.486632794142						intergenic
chr16	825255	825255	G	A	rs73491269	N	0.000658397679217	0.177516	D	D	D	N	intergenic
chr16	830207	830207	G	A	rs146766444	N	1.35632926686e-05	0.00778754					intergenic
chr16	836507	836510	CCTG	CG		N	0.000146624093759						intronic	RPUSD1								MCF-7	lymph node
chr16	83986575	83986575	C	T	rs12929571	N	0.0546994917095	0.611022					upstream	OSGIN1							oxidative stress induced growth inhibitor 1	Hep-G2	liver
chr16	83986636	83986636	G	C	rs12929854	N	0.00803085882217	0.608227					upstream	OSGIN1							oxidative stress induced growth inhibitor 1	Hep-G2	liver
chr16	841540	841540	C	G	rs147815583	N	0.0111974319443	0.00778754					intronic	CHTF18							CTF18, chromosome transmission fidelity factor 18	REH	bone marrow
chr16	841802	841802	C	T	rs143006475	N	0.498045414686	0.00758786					intronic	CHTF18							CTF18, chromosome transmission fidelity factor 18	REH	bone marrow
chr16	842518	842518	C	T	rs35387463	N	0.000184517994057	0.00758786	N	N	N	N	nonsynonymous SNV	CHTF18	NM_022092	11	1406	469	S=>L		CTF18, chromosome transmission fidelity factor 18	REH	bone marrow
chr16	84651757	84651757	G	C	rs71390484	N	0.486632794142						upstream	COTL1								WM-115	lymph node
chr16	848000	848000	C	T	rs148471037	N	6.61268932163e-05	0.00698882					3-UTR	CHTF18	NM_022092						CTF18, chromosome transmission fidelity factor 18	REH	bone marrow
chr16	848717	848717	G	C	rs146909074	N	6.38193450868e-05	0.00638978					3-UTR	GNG13	NM_016541							MCF-7	cerebral cortex
chr16	85474333	85474333	C	T	rs28499043	N	3.8344151676e-07	0.814297					intergenic
chr16	855885	855885	A	G	rs147922685	N	0.000169828170328	0.0153754		N	N	N	nonsynonymous SNV	PRR25	NM_001013638	1	443	148	K=>R			HEK-293	adipose tissue
chr16	85785087	85785087	A	G	rs301142	N	5.48951493329e-06	0.985423					upstream	C16orf74								EFO-21	urinary bladder
chr16	8588714	8588714	T	C	rs9932129	N	3.70287380065e-05	0.194888					upstream	TMEM114								Hep-G2	heart muscle
chr16	863398	863398	C	T	rs13337837	N	6.07459742241e-06	0.0994409		D	D	N	nonsynonymous SNV	PRR25	NM_001013638	3	746	249	P=>L			HEK-293	adipose tissue
chr16	863498	863498	G	C	rs13333991	N	2.93857660427e-10	0.191893		D	D	N	nonsynonymous SNV	PRR25	NM_001013638	3	846	282	L=>F			HEK-293	adipose tissue
chr16	86591676	86591676	G	A	rs6539953	N	3.78125889711e-07	0.914537					downstream	FLJ30679
chr16	88111308	88111308	A	C	rs11117359	N	2.09295554694e-18	0.985623					downstream	BANP								BEWO	ovary
chr16	88506741	88506741	A	G	rs3848234	N	9.71833287622e-06	0.840855					3-UTR	ZNF469	NM_001127464							THP-1	ovary
chr16	88602303	88602307	TGGCT	TGCT		N	0.280226767063						downstream	ZFPM1								K-562	stomach
chr16	88633347	88633347	G	T	rs8057773	N	7.51898255658e-07	0.48742					intergenic
chr16	88633354	88633354	A	G	rs6500476	N	6.73204292312e-09	0.83726					intergenic
chr16	88723538	88723550	TGGGGGGGGGTCT	TGGGGGGGGGGTCT		N	0.486864060163						intronic	MVD								CAPAN-2	colon
chr16	88763561	88763561	T	C	rs4597303	N	9.67261985352e-06	0.961062					3-UTR	RNF166	NM_001171816 NM_001171815 NM_178841							NB-4	bone marrow
chr16	89062776	89062776	C	T	rs10852634	N	4.80556423099e-07	0.882788					intergenic
chr16	89221287	89221287	G	C	rs78403542	N	5.62642671866e-05	0.15016					3-UTR	ACSF3	NM_001127214 NM_001243279 NM_001284316 NM_174917							U-698	duodenum
chr16	89267096	89267096	C	A	rs74899331	N	6.27569825156e-05	0.153155					upstream	SLC22A31								Hep-G2	lung
chr16	8963214	8963214	A	G	rs1657089	N	0.00136020884383	0.995407					upstream	CARHSP1							calcium regulated heat stable protein 1	Hep-G2	testis
chr16	89882807	89882807	G	T	rs78004870	N	0.0294558852911	0.573682					intronic	FANCA						FANCONI ANEMIA, COMPLEMENTATION GROUP A		NB-4	lymph node
chr16	90039450	90039450	G	C	rs11649211	N	0.0224007014185	0.652356					ncRNA	AFG3L1P
chr16	961051	961054	CCCC	TCCT		N	0.309854775667						nonframeshift substitution	LMF1	NM_022773	4	540					RPMI-8226	pancreas
chr16	984113	984113	C	A	rs11248955	N	1.46161596604e-06	0.491014					ncRNA	LMF1-AS1
chr16	997473	997475	TGC	CGT		N	0.0248033385724						intronic	LMF1								RPMI-8226	pancreas
chr17	1083083	1083083	A	G	rs62070499	N	0.0869393125176	0.746805					5-UTR	ABR	NM_021962						active BCR-related gene	U-87-MG	cerebral cortex
chr17	1396197	1396197	C	G	rs4606774	N	4.76293102736e-08	0.556909					upstream	MYO1C							myosin IC	A-549	adipose tissue
chr17	1637302	1637303	AA	GC		N	0.0481693558395						nonframeshift substitution	WDR81	NM_001163673 NM_001163809 NM_152348 NM_001163811	7,7,8,7	1362,4971,1818,1290				WD repeat domain 81	A-549	spleen
chr17	1645313	1645313	A	G	rs62090054	N	0.000166040685144						upstream	SERPINF2							serine (or cysteine) peptidase inhibitor, clade F, member 2	Hep-G2	liver
chr17	1686410	1686410	T	C	rs9902398	N	3.85321521868e-14	0.776757	N	N	N	N	nonsynonymous SNV	SMYD4	NM_052928	10	2180	727	Y=>C		SET and MYND domain containing 4	CACO-2	adipose tissue
chr17	16875636	16875636	C	A	rs4985754	N	0.385276645422	0.202276					upstream	TNFRSF13B						IMMUNODEFICIENCY, COMMON VARIABLE, 2		Karpas-707	spleen
chr17	16890782	16890782	T	A	rs6502550	N	1.55566282851e-16	1					intergenic
chr17	17388860	17388860	A	G	rs2141116	N	5.28655591525e-11	0.972644					intronic	MED9								MOLT-4	heart muscle
chr17	1942861	1942861	C	T	rs7207466	N	1.45930391682e-06	0.757588					intronic	DPH1							DPH1 homolog (S. cerevisiae)	HEK-293	prostate
chr17	1953037	1953037	A	C	rs2957924	N	0.0347129367292	0.897165					downstream	MIR132 MIR212
chr17	20885727	20885727	T	A	rs4985948	N	2.07770444831e-05	0.709665					downstream	LOC339260
chr17	21311932	21311932	A	G	rs1714904	N	0.000173702748725						5-UTR	KCNJ12	NM_021012 NM_001194958						potassium inwardly-rectifying channel, subfamily J, member 12	SCLC-21H	heart muscle
chr17	21323859	21323862	CCCC	TCAT		N	0.00508194137365						downstream	KCNJ12							potassium inwardly-rectifying channel, subfamily J, member 12	SCLC-21H	heart muscle
chr17	21323859	21323862	CCCC	TCCC		N	0.00508194137365						downstream	KCNJ12							potassium inwardly-rectifying channel, subfamily J, member 12	SCLC-21H	heart muscle
chr17	21549356	21549356	G	A	rs62049745	N	1.90753416973e-05						intergenic
chr17	21549741	21549745	GCACA	ACACG		N	6.14065793343e-05						intergenic
chr17	21549741	21549745	GCACA	GCACG		N	6.14065793343e-05						intergenic
chr17	21820963	21820963	T	G	rs9899382	N	3.95468147119e-09	0.989417					intergenic
chr17	29891669	29891669	G	T	rs8081211	N	2.80319534945e-11	0.42472					intergenic
chr17	30159178	30159178	T	C	rs7221594	N	3.77324695933e-08	0.886581					intergenic
chr17	3195503	3195503	C	T	rs703903	N	4.17194905822e-06	0.55012	D	D	D	N	nonsynonymous SNV	OR3A1	NM_002550	1	374	125	R=>Q			HDLM-2	testis
chr17	3213690	3213690	T	C	rs61734050	N	2.46566960413e-05	0.108626					ncRNA	OR3A4P
chr17	3214181	3214181	T	G	rs231678	N	3.06759943669e-07	0.436901					ncRNA	OR3A4P
chr17	3462130	3462130	T	A	rs322957	N	0.486632794142	0.288938					upstream	TRPV3							transient receptor potential cation channel, subfamily V, member 3	CACO-2	skin
chr17	35581887	35581912	TTATATATATATATATATATATATAC	TTATATATATATATATATATATAC		D	0.866300702095						intronic	ACACA							acetyl-Coenzyme A carboxylase alpha
chr17	38975307	38975332	TGCCGCCGTGGCCGCCGCCGTGGCCG	TGCCGCCGTGGCCG		N	0.486632794142						nonframeshift substitution	KRT10	NM_000421	7	1455					HaCaT	skin
chr17	38975307	38975332	TGCCGCCGTGGCCGCCGCCGTGGCCG	TGCCGCCGTGGCCGCCGCCGTAGCCG		N	0.486632794142						nonframeshift substitution	KRT10	NM_000421	7	1455					HaCaT	skin
chr17	3953080	3953083	GACT	AACC		N	0.486632794142						nonframeshift substitution	ZZEF1	NM_015113	37	5934				zinc finger, ZZ-type with EF hand domain 1	HMC-1	small intestine
chr17	3953080	3953083	GACT	GACC		N	0.486632794142						nonframeshift substitution	ZZEF1	NM_015113	37	5934				zinc finger, ZZ-type with EF hand domain 1	HMC-1	small intestine
chr17	39641499	39641499	C	T	rs7224654	N	1.20137769954e-07	0.624601					downstream	KRT36							keratin 36	Karpas-707	spleen
chr17	39890715	39890715	A	T	rs4796603	N	0.0040505179204	0.769968	N	P	P	N	nonsynonymous SNV	HAP1	NM_001079871 NM_177977 NM_001079870	1,1,1	172,172,172	58,58,58	S=>T,S=>T,S=>T		huntingtin-associated protein 1	REH	stomach
chr17	39959189	39959189	C	G	rs1065029	N	4.16910559894e-12	0.911142					3-UTR	P3H4	NM_006455
chr17	40075413	40075413	A	G	rs8077121	N	0.0262085348368	0.897963					upstream	ACLY							ATP citrate lyase	A-549	prostate
chr17	41361881	41361914	ATTTTTTTTTTTTTTTTTGCTTTGCTTGTCTCTA	ATTTTTTTTTTTTTTTGCTTTGCTTGTCTCTA		D	0.999930381775						intronic	NBR1							neighbor of Brca1 gene 1	U-138-MG	testis
chr17	41381916	41381916	A	G	rs4027820	D	0.987441658974						upstream	LINC00854
chr17	41381926	41381926	A	G	rs2356320	D	0.980338811874						upstream	LINC00854
chr17	41381942	41381942	T	C	rs2356319	D	0.999221801758						upstream	LINC00854
chr17	41381981	41381981	T	C	rs2356318	D	0.7703743577						upstream	LINC00854
chr17	41466515	41466517	TCT	CCC		D	0.999802291393						upstream	LINC00910
chr17	41466522	41466522	T	G	rs144280248	D	0.997809946537						upstream	LINC00910
chr17	41940360	41940360	G	T	rs231543	N	1.68811353785e-10	0.783746					3-UTR	CD300LG	NM_145273						CD300 antigen like family member G	BEWO	adipose tissue
chr17	42002446	42002446	T	G	rs1731900	N	2.31038507081e-06	0.204273					intergenic
chr17	42201041	42201041	G	T	rs112114764	N	0.486632794142	0.407947					upstream	HDAC5							histone deacetylase 5	THP-1	skin
chr17	42296981	42297006	TGGCGGCGGCGGCGGCGGCGGCGGCT	TGGCGGCGGCGGCGGCGGCT		N	0.447463899851						5-UTR	UBTF	NM_001076684 NM_014233						upstream binding transcription factor, RNA polymerase I	Daudi	lymph node
chr17	43677727	43677727	T	C	rs2693342	N	1.11630503452e-10	0.971246					ncRNA	LOC644172
chr17	45044147	45044147	C	A	rs11079745	N	7.86950749898e-06	0.439896					3-UTR	GOSR2	NM_001321133							PC-3	duodenum
chr17	45051183	45051183	G	A	rs7211367	N	4.10862952549e-08	0.708267					downstream	MIR5089
chr17	45051296	45051296	A	T	rs7215119	N	5.74958436417e-09	0.708466					downstream	MIR5089
chr17	45054806	45054806	A	C	rs3851790	N	0.00158704293426	0.810703					downstream	RPRML								Daudi	cerebral cortex
chr17	45933341	45933341	T	C	rs8064241	N	2.18474807689e-10	0.474441					upstream	SP6							trans-acting transcription factor 6	BEWO	placenta
chr17	46102904	46102904	G	A	rs33983467	N	0.0130674997345	0.267971					downstream	COPZ2								U-87-MG	adipose tissue
chr17	4637016	4637016	C	T	rs4790696	N	2.54024662416e-10	0.975639					3-UTR	CXCL16	NM_022059						chemokine (C-X-C motif) ligand 16	A-431	lung
chr17	46653332	46653332	T	C	rs6504397	N	1.86307219652e-11	0.9375					3-UTR	HOXB4	NM_024015						homeobox B4	EFO-21	adipose tissue
chr17	4686463	4686465	ACG	ACGCCTACCTGGCTCG		D	0.983967006207						3-UTR	TM4SF5	NM_003963							Hep-G2	duodenum
chr17	4689194	4689198	ACCAT	ACAT		N	0.00146927498281						frameshift substitution	VMO1	NM_001144939	2	345				vitelline membrane outer layer 1 homolog (chicken)	MCF-7	spleen
chr17	4689572	4689572	T	C	rs4790706	N	2.25468532733e-09	0.533546	N	N	N	N	nonsynonymous SNV	VMO1	NM_001144940 NM_001144939 NM_001144941 NM_182566	1,1,1,1	76,26,76,26,76,26,76,26	26,26,26,26	T=>A,T=>A,T=>A,T=>A		vitelline membrane outer layer 1 homolog (chicken)	MCF-7	spleen
chr17	4704153	4704153	C	T	rs8081550	N	1.98133093363e-05	0.573682					intergenic
chr17	48240420	48240452	TGAAGGAAGGAAGGAAGGAAGGGAGGAAGGAAA	TGAAGGAAGGAAGGAAGGGAGGAAGGAAA		N	0.000334326730808						intergenic
chr17	48785165	48785165	C	T	rs8068442	N	0.486632794142	0.998003					5-UTR	ANKRD40	NM_052855							CACO-2	adipose tissue
chr17	48834053	48834096	CAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAACCTAAATGTATG	CAAAAAAAAAAAAAAAAAAAAAAAAGAAACCTAAATGTATG		N	0.000537936924957						intergenic
chr17	48987851	48987851	T	C	rs887377	N	8.88383292486e-18	0.854433					intergenic
chr17	49375325	49375344	AACACACACACACACAAACT	AACACACACACACAAACT		N	0.108350411057						downstream	UTP18							UTP18, small subunit (SSU) processome component, homolog (yeast)	U-266/84	testis
chr17	55028928	55028928	A	G	rs4794675	N	1.54771143457e-07	0.903954					intronic	COIL							coilin	U-266/84	testis
chr17	5676038	5676038	G	A	rs12450161	N	6.45069121674e-06	0.446685					ncRNA	LOC339166
chr17	61851588	61851604	CGGCGGTGGTGGTGGTG	CG		N	0.486632794142						5-UTR	DDX42	NM_007372 NM_203499						DEAD (Asp-Glu-Ala-Asp) box polypeptide 42	U-138-MG	ovary
chr17	61888693	61888693	T	A	rs2584629	N	2.72296030168e-09	0.987021					intronic	DDX42							DEAD (Asp-Glu-Ala-Asp) box polypeptide 42	U-138-MG	ovary
chr17	61904465	61904467	CTA	CGTA		N	0.486632794142						5-UTR	FTSJ3	NM_017647						FtsJ homolog 3 (E. coli)	SH-SY5Y	kidney
chr17	63557920	63557920	A	G	rs62065660	N	0.120208509266	0.914537					upstream	AXIN2							axin2	Hep-G2	uterus
chr17	64960677	64960677	A	G	rs111259345	N	1.66000296842e-10	0.782348					upstream	CACNG4							calcium channel, voltage-dependent, gamma subunit 4	SH-SY5Y	cerebral cortex
chr17	6559040	6559040	G	A	rs28504521	N	0.0187278259546						upstream,downstream	MIR4520-1;MIR4520-2
chr17	66148812	66148820	CGGGTGGTC	CGGGGTGGTC		N	0.0131171727553						intergenic
chr17	6652890	6652890	A	G	rs1567346	N	1.58995963062e-08	0.648163					intergenic
chr17	66542048	66542048	T	C	rs4968808	N	0.00215455354191	0.20627					intronic	FAM20A PRKAR1A
chr17	7011081	7011088	CACACGTA	CA		N	0.000820443208795						intronic	ASGR2							asialoglycoprotein receptor 2	Hep-G2	liver
chr17	7011081	7011088	CACACGTA	CACACGTACACATTACACACACCGCA		N	0.000760556489695						intronic	ASGR2							asialoglycoprotein receptor 2	Hep-G2	liver
chr17	7012073	7012079	GGCCCCC	TGCCTCT		N	0.00703720608726						nonframeshift substitution	ASGR2	NM_001181 NM_080914 NM_080912	3,2,3	253,196,253				asialoglycoprotein receptor 2	Hep-G2	liver
chr17	7123240	7123256	TGGGCGTGCAGGACGCC	TGGGCGTGCAGGACGCGGGCGTGCAGGACGCC		N	0.486632794142						5-UTR	ACADVL	NM_000018 NM_001033859 NM_001270448 NM_001321074 NM_001365					VLCAD DEFICIENCY		HDLM-2	duodenum
chr17	7127718	7127718	T	C	rs17671352	N	1.14374852274e-05	0.519768					intronic	ACADVL						VLCAD DEFICIENCY		HDLM-2	duodenum
chr17	7165395	7165403	CGGGGAGAC	CGGGAGAC		N	0.486632794142						5-UTR	CLDN7	NM_001185023 NM_001307 NM_001185022							HaCaT	colon
chr17	7197794	7197794	C	A	rs222859	N	4.55148295941e-07	0.719449	N	N	N	N	nonsynonymous SNV	YBX2	NM_015982	1	26	9	G=>V		Y box protein 2	MCF-7	testis
chr17	7292107	7292107	G	A	rs6503018	N	2.98995871617e-07	0.725639		N	N	D	nonsynonymous SNV	TNK1	NM_001251902 NM_003985	12,12	1792,1777	598,593	V=>M,V=>M		tyrosine kinase, non-receptor, 1	HaCaT	stomach
chr17	7293715	7293715	C	T	rs3744549	N	5.19803870702e-06	0.525359	N	N	N	N	nonsynonymous SNV	PLSCR3	NM_020360 NM_001201576	8,8	877,877	293,293	V=>I,V=>I		phospholipid scramblase 3
chr17	7297452	7297452	A	G	rs4613118	N	0.000284761103103	0.545128					ncRNA	TMEM256-PLSCR3								TIME	spleen
chr17	7322245	7322245	A	G	rs3174744	N	1.46488190467e-08	0.45607					3-UTR	NLGN2	NM_020795						neuroligin 2	AN3-CA	cerebral cortex
chr17	7358861	7358861	T	C	rs2302762	N	0.486632794142	0.476038					intronic	CHRNB1							cholinergic receptor, nicotinic, beta polypeptide 1 (muscle)	RH-30	adrenal gland
chr17	74670533	74670533	T	C	rs2898621	N	3.19383897107e-09	0.899561					3-UTR	MXRA7	NM_001008528						matrix-remodelling associated 7	U-87-MG	heart muscle
chr17	74707050	74707050	G	C	rs71383084	N	0.00200037518516	0.94349					5-UTR	MXRA7	NM_001008528 NM_001008529 NM_198530						matrix-remodelling associated 7	U-87-MG	heart muscle
chr17	74707361	74707361	G	A	rs12951649	N	1.14255581138e-05	0.942891					upstream	MXRA7							matrix-remodelling associated 7	U-87-MG	heart muscle
chr17	74728938	74728938	C	T	rs4789351	N	0.260223776102	0.888978					intronic	METTL23								SK-MEL-30	testis
chr17	7485206	7485206	A	G	rs1143015	N	1.72548570845e-05	0.641573					3-UTR	CD68	NM_001251 NM_001040059						CD68 antigen	U-87-MG	spleen
chr17	7490379	7490379	G	C	rs2302661	N	1.52382672453e-11	0.446486					intronic	MPDU1						CONGENITAL DISORDER OF GLYCOSYLATION, TYPE If	mannose-P-dolichol utilization defect 1	U-251-MG	liver
chr17	75522452	75522452	C	G	rs35551889	N	2.05530727726e-06	0.365216					intergenic
chr17	7578645	7578645	C	T	rs2909430	N	2.12150838563e-10	0.842851					5-UTR	TP53	NM_001126115 NM_001126116 NM_001126117 NM_001276697 NM_001276698 NM_001276699					COLORECTAL CANCER		REH	lymph node
chr17	7578711	7578736	CTTTTTTTTTTTTTTTTTTGAGATAG	CTTTTTTTTTTTTTTTGAGATAG		N	0.137590065598						5-UTR	TP53	NM_001126115 NM_001126116 NM_001126117 NM_001276697 NM_001276698 NM_001276699					COLORECTAL CANCER		REH	lymph node
chr17	7579801	7579801	G	C	rs1642785	N	4.95355561725e-05	0.584864					5-UTR	TP53	NM_001126118					COLORECTAL CANCER		REH	lymph node
chr17	76138710	76138710	A	G	rs11650029	N	3.1291427149e-05	0.0728834					3-UTR	TMC8	NM_152468					EPIDERMODYSPLASIA VERRUCIFORMIS	transmembrane channel-like gene family 8	HMC-1	lymph node
chr17	7615364	7615364	T	C	rs3948593	N	2.59036596617e-08	0.93131					downstream	EFNB3							ephrin B3	AN3-CA	cerebral cortex
chr17	76275094	76275094	G	C	rs4789570	N	1.30689059574e-07	0.973043					upstream	LOC100996291
chr17	7691053	7691081	TAAAAAAAAAAAAAAAAAAAGCAAATCGT	TAAAAAAAAAAAAAAAAAAGCAAATCGT		N	0.00537469098344						intronic	DNAH2								CACO-2	testis
chr17	7700712	7700712	C	T	rs1565817	N	1.99001133296e-05	0.533946					intronic	DNAH2								CACO-2	testis
chr17	7750177	7750219	TACCACCACCACCACCACCACCACCACCACCACCACCACCCCT	TACCACCACCACCACCACCACCACCACCACCACCCCT		N	0.00157358113211						nonframeshift substitution	KDM6B	NM_001080424	9	752				KDM1 lysine (K)-specific demethylase 6B	SH-SY5Y	urinary bladder
chr17	7788409	7788409	C	G	rs201772788	N	0.0545219816267						intronic	CHD3							chromodomain helicase DNA binding protein 3	AN3-CA	prostate
chr17	77909339	77909339	A	G	rs2650243	N	4.93184643346e-07	0.97504					3-UTR	TBC1D16	NM_001271844 NM_001271845 NM_019020						TBC1 domain family, member 16	SK-MEL-30	adipose tissue
chr17	77912051	77912051	C	G	rs2587512	N	1.70272834461e-12	0.963858					3-UTR	TBC1D16	NM_001271844 NM_001271845 NM_019020						TBC1 domain family, member 16	SK-MEL-30	adipose tissue
chr17	78228023	78228033	GCCTCCTCCCA	GCCTCCCA		N	0.00107466697227						downstream	SLC26A11							solute carrier family 26, member 11	SH-SY5Y	adrenal gland
chr17	79615825	79615825	G	A	rs9890264	N	0.212659612298	0.669529					downstream	TSPAN10							tetraspanin 10
chr17	8055723	8055723	A	G	rs3027172	N	0.000754390261136	0.104633					5-UTR	PER1	NM_002616						period homolog 1 (Drosophila)	Karpas-707	bone marrow
chr17	8216468	8216468	T	C	rs871841	N	1.36636538173e-06	0.621006	N	N	N	N	nonsynonymous SNV	ARHGEF15	NM_025014 NM_173728	3,3	830,830	277,277	L=>P,L=>P		Rho guanine nucleotide exchange factor (GEF) 15	TIME	adipose tissue
chr17	8243661	8243661	G	A	rs12601097	N	2.24749037443e-05	0.538938	N	N	N	N	nonsynonymous SNV	ODF4	NM_153007	1	292	98	V=>M		outer dense fiber of sperm tails 4	RT-4	testis
chr17	8378693	8378694	GA	TC		N	0.458278298378						3-UTR	MYH10	NM_001256012 NM_001256095 NM_005964						myosin, heavy polypeptide 10, non-muscle	REH	lung
chr17	8725212	8725218	GCAGGAA	ACAGGGAA		D	0.91521281004						exonic	PIK3R6							phosphoinositide-3-kinase, regulatory subunit 6
chr17	8725212	8725218	GCAGGAA	GCAGGGAA		D	0.91521281004						exonic	PIK3R6							phosphoinositide-3-kinase, regulatory subunit 6
chr17	9086228	9086228	C	A	rs2302196	N	1.5188981024e-06	0.322284					intronic	NTN1							netrin 1	BEWO	heart muscle
chr17	9086561	9086561	C	A	rs16957995	N	5.35814194791e-07	0.322684					intronic	NTN1							netrin 1	BEWO	heart muscle
chr18	108329	108329	A	G	rs34310130	D	1.0						upstream	ROCK1P1
chr18	13612544	13612563	ACCCCCCCCCCCTCCACGCT	ACCCCCCCCCCCCTCCACGCT		N	0.486632794142						5-UTR	LDLRAD4	NM_001003674 NM_001003675							MOLT-4	cerebral cortex
chr18	13612544	13612563	ACCCCCCCCCCCTCCACGCT	ACCCCCCCCCCTCCACGCT		N	0.486632794142						5-UTR	LDLRAD4	NM_001003674 NM_001003675							MOLT-4	cerebral cortex
chr18	21898556	21898556	T	C	rs12955338	N	0.00158640008885	0.117812					intronic	OSBPL1A							oxysterol binding protein-like 1A	AN3-CA	cerebral cortex
chr18	23533133	23533133	T	C	rs8082926	N	1.57567003889e-09	0.802117					intergenic
chr18	30352057	30352096	GCGCCGGCCCGCCGGCCCGCCGGCCCGCCCGCCCGGGGGA	GCGCCGGCCCGCCGGCCCGCCCGCCCGGGGGA		N	0.108723260462						intronic	KLHL14							kelch-like 14 (Drosophila)	Hep-G2	thyroid gland
chr18	32847451	32847465	CCGGCGGCGGCGGGA	CCGGCGGCGGGA		N	0.486632794142						5-UTR	ZSCAN30	NM_001166012						zinc finger and SCAN domain containing 30	U-138-MG	thyroid gland
chr18	32917780	32917790	GAAAAGAAACC	GAAAAAGAAACC		N	0.324020087719						intronic	ZNF24								HL-60	thyroid gland
chr18	33048554	33048554	C	T	rs3088182	N	3.34233627655e-05	0.23742					3-UTR	INO80C	NM_001308064 NM_001098817 NM_194281							U-698	testis
chr18	43420177	43420177	G	A	rs61104666	N	3.75674291675e-09	0.252995					synonymous SNV	SIGLEC15	NM_213602	5	876	292	E=>E		sialic acid binding Ig-like lectin 15	U-87-MG	small intestine
chr18	43844658	43844658	A	C	rs8086610	N	1.60964430052e-06	0.533147					3-UTR	C18orf25	NM_001008239 NM_145055							HaCaT	esophagus
chr18	44337138	44337138	G	T		N	3.87071049772e-05	0.000399361					upstream	ST8SIA5							ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5	WM-115	adrenal gland
chr18	44338072	44338072	T	C	rs3809961	N	7.4003651207e-08	0.615016					upstream	ST8SIA5							ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5	WM-115	adrenal gland
chr18	45711740	45711740	T	C	rs12455480	N	2.23994493354e-06	0.203075					intronic	ZBTB7C							zinc finger and BTB domain containing 7C	RT-4	esophagus
chr18	46004809	46004809	T	C	rs7231325	N	4.80447279183e-12	0.909944					intergenic
chr18	46385948	46385948	A	G	rs3752082	N	1.08593667392e-06	0.573882					3-UTR	CTIF	NM_001142397 NM_014772						CBP80/20-dependent translation initiation factor	U-2-OS	adipose tissue
chr18	46387889	46387889	A	G	rs3809921	N	2.51902925186e-08	0.570687					3-UTR	CTIF	NM_001142397 NM_014772						CBP80/20-dependent translation initiation factor	U-2-OS	adipose tissue
chr18	50432602	50432602	C	G	rs2229080	N	6.56924885334e-06	0.477436	N	P	P	N	nonsynonymous SNV	DCC	NM_005215	3	601	201	R=>G		deleted in colorectal carcinoma	U-266/70	testis
chr18	52814348	52814348	C	T	rs56291064	N	9.5080366691e-07	0.239417					intergenic
chr18	5629174	5629174	A	G	rs12051981	N	2.48244589329e-08	0.924321					upstream	EPB41L3								TIME	testis
chr18	57597842	57597842	T	C	rs9952602	N	4.29047624095e-08	0.920327					intergenic
chr18	5892517	5892517	T	C	rs9948128	N	3.51735141013e-10	0.5002					upstream	TMEM200C								PC-3	adrenal gland
chr18	61393834	61393834	C	T	rs931850	N	2.41503983034e-07	0.704673					intergenic
chr18	6511103	6511103	T	C	rs4798451	N	1.31536066761e-11	0.970248					upstream	LINC01387
chr18	67614674	67614689	TAAAAAAAAAAATTGC	TAAAAAAAAAAAATTGC		N	1.32844322209e-08						5-UTR	CD226	NM_001303618						CD226 antigen	HEL	spleen
chr18	70210781	70210781	G	A	rs4961397	N	7.82467868277e-09	0.46845					intronic	CBLN2							cerebellin 2 precursor protein	SH-SY5Y	cerebral cortex
chr18	72188574	72188578	TAACG	TACG		N	0.0492598302662						3-UTR	CNDP2	NM_018235 NM_001168499						CNDP dipeptidase 2 (metallopeptidase M20 family)	RPMI-8226	kidney
chr18	74272711	74272711	G	A	rs7228932	N	3.26798317474e-06	0.413538					downstream	LINC00908								THP-1	ovary
chr18	74272743	74272743	T	A	rs7234659	N	8.95659127309e-07	0.515775					downstream	LINC00908								THP-1	ovary
chr18	74471133	74471133	G	C	rs60137918	N	5.91719299337e-07	0.26278					intergenic
chr18	74961675	74961675	T	G	rs11151014	N	8.95957346074e-05	0.355831					upstream	GALR1							galanin receptor 1	SCLC-21H	adrenal gland
chr18	74961687	74961687	A	G	rs11151015	N	1.05130075099e-05	0.359425					upstream	GALR1							galanin receptor 1	SCLC-21H	adrenal gland
chr18	77246406	77246406	T	G	rs754093	N	4.07174127304e-07	0.338858	D	P	N	N	nonsynonymous SNV	NFATC1	NM_006162 NM_172388 NM_172387 NM_172389 NM_001278673 NM_001278669	9,8,9,9,8,9	2251,751,835,279,2212,738,2212,738,835,279,2251,751	751,279,738,738,279,751	C=>G,C=>G,C=>G,C=>G,C=>G,C=>G		nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	U-698	lymph node
chr18	77349874	77349874	A	G	rs4465664	N	1.00651625923e-10	0.70627					intergenic
chr18	77439258	77439258	A	G	rs978579	N	0.486632794142	0.738219					ncRNA	LOC284241
chr19	10197488	10197490	GGC	GCGC		D	0.999987483025						intronic	C19orf66								SK-MEL-30	liver
chr19	10334443	10334443	A	C	rs2116941	N	4.81630024751e-07	0.772764					3-UTR	S1PR2	NM_004230							U-698	placenta
chr19	10446568	10446568	T	C	rs2304237	N	0.000229792029131	0.179513	N	N	N	N	nonsynonymous SNV	ICAM3	NM_002162	3	428	143	P=>R			Karpas-707	bone marrow
chr19	10449358	10449358	T	C	rs7258015	N	1.16986313969e-08	0.178914	N	N	N	N	nonsynonymous SNV	ICAM3	NM_002162	2	343	115	P=>A			Karpas-707	bone marrow
chr19	10664632	10664632	A	G	rs3087689	N	1.4159550199e-09	0.294529	D	N	N	N	nonsynonymous SNV	KRI1	NM_023008	19	2125	709	S=>P		KRI1 homolog (S. cerevisiae)	HEL	lymph node
chr19	10794793	10794793	C	T	rs892087	N	3.53517819462e-08	0.572484					intronic	ILF3							interleukin enhancer binding factor 3	NB-4	bone marrow
chr19	10824435	10824453	CTTTTTTTTTTTTTTCCGA	CTTTTTTTTTTTTTCCGA		N	0.0295836105943						downstream	QTRT1							queuine tRNA-ribosyltransferase 1	NB-4	colon
chr19	11266584	11266584	A	G	rs892114	N	0.486632794142	0.719649					upstream	SPC24								Karpas-707	bone marrow
chr19	11358799	11358799	G	A	rs12978266	N	1.33938399927e-07	0.519569	D	D	P	N	nonsynonymous SNV	DOCK6	NM_020812	7	749	250	P=>L		dedicator of cytokinesis 6	TIME	adipose tissue
chr19	11373641	11373641	G	A	rs56965685	N	1.12756185899e-06	0.55651					upstream	DOCK6							dedicator of cytokinesis 6	TIME	adipose tissue
chr19	11459665	11459667	GAG	GAAG		N	0.000146206089994						intronic	CCDC159							coiled-coil domain containing 159	Karpas-707	prostate
chr19	11508177	11508177	G	A	rs2291516	N	7.43544933357e-06	0.210463	N	N	N	N	nonsynonymous SNV	RGL3	NM_001161616 NM_001035223	17,17	1861,1843	621,615	R=>C,R=>C		ral guanine nucleotide dissociation stimulator-like 3	BEWO	thyroid gland
chr19	11530702	11530702	T	C	rs318694	N	6.47495994599e-08	0.957268					upstream,downstream	RGL3;CCDC151
chr19	11727503	11727503	T	C	rs4545929	N	2.28489449583e-09	0.384585					intronic	ZNF627								SCLC-21H	thyroid gland
chr19	11871706	11871706	G	C	rs6511754	N	2.63796778199e-07	0.622204					intergenic
chr19	12090765	12090765	C	A	rs279142	N	3.40048457341e-17	0.85643					3-UTR	ZNF763	NM_001012753							BEWO	ovary
chr19	1257537	1257539	CGT	CTCTGT		D	0.999999761581						3-UTR	MIDN	NM_177401						midnolin	NTERA-2	bone marrow
chr19	12687356	12687356	G	C	rs8101987	N	1.07080122689e-05	0.465256					3-UTR	ZNF490	NM_020714							U-266/84	thyroid gland
chr19	13002400	13002400	G	C	rs1799918	N	0.000329057016643	0.253195					intronic	GCDH							glutaryl-Coenzyme A dehydrogenase	U-266/70	liver
chr19	13079984	13079984	T	C	rs7250153	N	3.50332922394e-11	1					upstream	DAND5								SH-SY5Y	heart muscle
chr19	13946886	13946886	T	C	rs345638	N	1.14993760292e-07	0.997804					ncRNA	LOC284454
chr19	14183577	14183577	C	G	rs899170	N	9.27275820573e-08	0.492812					upstream	MIR1199 MISP3
chr19	14185226	14185226	T	C	rs7258963	N	0.00814404524863	0.496006	N			N	nonsynonymous SNV	MISP3	NM_001291291	2	593	198	V=>A
chr19	14191694	14191721	GGGGGAGGGGAGGGGAGGGGAGGAGAAC	GGGGGAGGGGAGGGGAGGAGAAC		N	0.130821689963						downstream	C19orf67								Daudi	testis
chr19	14779550	14779550	C	A	rs4239642	N	1.8829369175e-09	0.857428					intronic	ADGRE3
chr19	14975693	14975693	T	A	rs11085913	N	2.72706870419e-07	0.835463					intergenic
chr19	1507535	1507535	T	C	rs791461	N	2.08197988627e-07	0.534944					intronic	ADAMTSL5							ADAMTS-like 5	CACO-2	heart muscle
chr19	15198631	15198631	A	C	rs8105737	N	3.52098933343e-10	0.490815	D	D	D	N	nonsynonymous SNV	OR1I1	NM_001004713	1	755	252	Y=>S			A-431	adipose tissue
chr19	1526931	1526931	A	C	rs2656858	N	7.90670376394e-11	0.689097					5-UTR	PLK5	NM_001243079						polo-like kinase 5	Daudi	testis
chr19	1535349	1535349	G	A	rs265281	N	5.78830814391e-08	0.768171					3-UTR	PLK5	NM_001243079						polo-like kinase 5	Daudi	testis
chr19	15770018	15770020	TCC	CCT		N	0.00249279197305						intronic	CYP4F3								CAPAN-2	liver
chr19	15783162	15783162	G	A	rs5022665	N	1.57198467576e-08	0.927117					upstream	CYP4F12								HaCaT	duodenum
chr19	15838746	15838746	A	G	rs11672695	N	7.58750672958e-07	0.557708					upstream	OR10H2								RT-4	urinary bladder
chr19	15838753	15838759	AGGCGCT	AGCGCT		N	0.486632794142						upstream	OR10H2								RT-4	urinary bladder
chr19	15905941	15905941	T	C	rs56117700	N	1.01322825685e-06	0.713259					downstream	OR10H5								A-431	testis
chr19	16222296	16222296	A	C	rs16981113	N	0.486632794142	0.195487					upstream	RAB8A							RAB8A, member RAS oncogene family	HEL	liver
chr19	16222325	16222325	G	C	rs62117903	N	0.196164935827	0.195487					upstream	RAB8A							RAB8A, member RAS oncogene family	HEL	liver
chr19	16589750	16589750	T	C	rs8103521	N	2.23736705607e-07	0.659944					downstream	CALR3							calreticulin 3	BEWO	testis
chr19	16988456	16988456	A	G	rs2303090	N	6.85437262504e-11	0.633586					intronic	SIN3B							transcriptional regulator, SIN3B (yeast)	BEWO	uterus
chr19	17488607	17488607	G	A	rs7257450	N	2.08745823329e-05	0.48742					upstream	PLVAP								EFO-21	thyroid gland
chr19	17513715	17513715	T	G	rs2303683	N	5.48437988357e-08	0.860024					downstream	BST2							bone marrow stromal cell antigen 2	Karpas-707	ovary
chr19	17617375	17617375	G	A	rs111740359	N	0.00018867617473	0.363019					downstream	SLC27A1							solute carrier family 27 (fatty acid transporter), member 1	SK-MEL-30	ovary
chr19	17622391	17622391	A	G	rs879142	N	0.428339898586	0.347843					upstream	PGLS								PC-3	spleen
chr19	17643065	17643065	T	C	rs12984143	N	8.99822012457e-08	0.744209					intronic	FAM129C							family with sequence similarity 129, member C	Daudi	spleen
chr19	17692324	17692324	T	G	rs8100092	N	1.44444967098e-09	0.82488					3-UTR	COLGALT1	NM_024656							U-937	placenta
chr19	1780509	1780509	T	C	rs7250253	N	2.24511564895e-09	0.463458					intergenic
chr19	18272190	18272190	A	C	rs2241088	N	0.374144166708	0.923922	N	N	N	N	nonsynonymous SNV	PIK3R2	NM_005027	6	700	234	S=>R		phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 2 (p85 beta)	HEK-293	skin
chr19	21984439	21984439	T	C	rs2359707	N	3.84127885056e-09	0.952276					intergenic
chr19	22380017	22380017	G	A	rs1852428	N	8.53810161061e-06	0.441294					upstream	ZNF676								NTERA-2	testis
chr19	2274359	2274359	C	T	rs12985247	N	0.00679493090138	0.276558					downstream	C19orf35 OAZ1
chr19	23089316	23089316	A	G	rs3862488	N	4.28591029333e-09	0.884784					intergenic
chr19	2520716	2520716	T	C	rs1133692	N	2.9128608503e-07	0.566494					5-UTR	GNG7	NM_052847							REH	cerebral cortex
chr19	2642566	2642566	G	A	rs112167953	N	0.000232366015553	0.101637					intronic	GNG7								REH	cerebral cortex
chr19	2897515	2897515	G	A	rs12982838	N	2.79651931123e-06	0.754193					intergenic
chr19	2900865	2900865	G	A	rs10420989	N	0.0848807394505	0.842252					upstream	ZNF57								RH-30	testis
chr19	292082	292082	C	T	rs3813154	N	8.13244405435e-05	0.449081					upstream	PLPP2
chr19	29505196	29505200	ACACG	CCACA		N	9.12626492209e-05						downstream	LINC01532
chr19	33467620	33467620	T	C	rs7247715	N	7.26152151742e-08	0.936701					3-UTR	FAAP24	NM_001300978 NM_152266
chr19	33879483	33879483	A	G	rs889136	N	9.56745932479e-11	0.992013					intronic	PEPD							peptidase D	A-549	kidney
chr19	34859457	34859457	G	A	rs2099099	N	5.11205227455e-12	0.685903					intronic	GPI								A-549	heart muscle
chr19	35168629	35168629	G	A	rs8106282	N	0.486632794142	0.0840655					5-UTR	ZNF302	NM_001012320 NM_001289181 NM_001289182 NM_001289183 NM_001289184 NM_001289185 NM_001289186 NM_001289187 NM_001289188 NM_001289189 NM_001289190 NM_001289191 NM_001289192 NM_018443 NM_018675							U-266/84	ovary
chr19	35434238	35434238	A	G	rs1811	N	2.99817982941e-11	0.586062	N	N	N	N	nonsynonymous SNV	ZNF30	NM_194325 NM_001099438 NM_001099437	5,5,5	368,371,371	123,124,124	Q=>R,Q=>R,Q=>R			U-266/84	urinary bladder
chr19	35435006	35435006	G	A	rs1345658	N	2.14234672985e-30	0.652356	N	N	N	N	nonsynonymous SNV	ZNF30	NM_194325 NM_001099438 NM_001099437	5,5,5	1136,1139,1139	379,380,380	R=>K,R=>K,R=>K			U-266/84	urinary bladder
chr19	35454604	35454605	AA	CG		N	0.0423128455877						5-UTR	ZNF792	NM_175872							HMC-1	lung
chr19	35655151	35655151	T	C	rs1672994	N	0.00598330702633	0.847444					intronic	FXYD5							FXYD domain-containing ion transport regulator 5	Karpas-707	bone marrow
chr19	35660508	35660508	G	A	rs12110	N	7.41514384117e-07	0.874002	N	N	N	N	nonsynonymous SNV	FXYD5	NM_001164605 NM_144779 NM_014164	9,9,9	527,527,527	176,176,176	R=>H,R=>H,R=>H		FXYD domain-containing ion transport regulator 5	Karpas-707	bone marrow
chr19	35841858	35841858	G	A	rs1978014	N	4.10571104892e-10	0.739417					upstream	FFAR1								U-698	pancreas
chr19	35843983	35843990	ACCCCACG	ACCCCCACG		N	0.486632794142						downstream	FFAR1								U-698	pancreas
chr19	35850863	35850863	A	G	rs62109583	N	1.16205729483e-08	0.792133					3-UTR	FFAR3	NM_005304							RPMI-8226	appendix
chr19	35889429	35889429	C	A	rs12978607	N	5.11119833391e-06	0.63778					intergenic
chr19	36236120	36236120	A	G	rs231597	N	0.0402644686401	0.984026					intronic	U2AF1L4								HMC-1	thyroid gland
chr19	374016	374016	G	A	rs2303815	N	6.60068108118e-05	0.128395					intronic	THEG							testicular haploid expressed gene	HDLM-2	testis
chr19	37441980	37441980	A	G	rs1644634	N	1.28121041554e-10	0.547923	N	N	N	N	nonsynonymous SNV	ZNF568	NM_198539 NM_001204835 NM_001204837 NM_001204836	7,7,5,6	1925,1922,1733,1733	642,641,578,578	Q=>R,Q=>R,Q=>R,Q=>R			U-266/84	ovary
chr19	37482068	37482068	T	G	rs1644679	N	2.54489123108e-06	0.500399					intronic	ZNF568								U-266/84	ovary
chr19	37488299	37488299	A	G	rs1363752	N	3.00546289245e-11	0.496406	N	N	N	N	nonsynonymous SNV	ZNF568	NM_001204838 NM_001204839	10,9	1706,1514	569,505	E=>G,E=>G			U-266/84	ovary
chr19	37488472	37488472	C	G	rs1644698	N	6.49217398591e-12	0.497005	N	N	N	N	nonsynonymous SNV	ZNF568	NM_001204838 NM_001204839	10,9	1879,1687	627,563	P=>A,P=>A			U-266/84	ovary
chr19	37488677	37488689	GAAAAAAAAACTT	GAAAAAAAAAACTT		N	0.00874592643231						3-UTR	ZNF568	NM_001204838 NM_001204839							U-266/84	ovary
chr19	37488845	37488845	G	C	rs2547044	N	4.31132917811e-07	0.496406					downstream	ZNF568								U-266/84	ovary
chr19	3775856	3775856	C	T	rs10410666	N	1.08850649383e-07	0.833666					ncRNA	MIR1268A
chr19	38708398	38708398	A	C	rs2304175	N	9.15790909772e-09	0.828474					intronic	DPF1							D4, zinc and double PHD fingers family 1	SCLC-21H	cerebral cortex
chr19	38709568	38709568	C	T	rs2255456	N	2.98770402196e-07	0.825679					intronic	DPF1							D4, zinc and double PHD fingers family 1	SCLC-21H	cerebral cortex
chr19	38747117	38747117	A	G	rs8100395	N	0.232276841998	0.52516					5-UTR	PPP1R14A	NM_001243947 NM_033256						protein phosphatase 1, regulatory (inhibitor) subunit 14A	A-549	adipose tissue
chr19	38747272	38747272	T	C	rs7247241	N	0.0554680526257	0.52476					upstream	PPP1R14A							protein phosphatase 1, regulatory (inhibitor) subunit 14A	A-549	adipose tissue
chr19	39221947	39221947	A	T	rs4801859	N	4.12538447847e-09	0.258387					intronic	CAPN12							calpain 12	HMC-1	gallbladder
chr19	3924771	3924787	ATTTTTTTTTTTTAACG	ATTTTTTTTTTTAACG		N	0.0160565990955						ncRNA	MIR1268A
chr19	39435485	39435485	G	A	rs10416055	N	7.60025272939e-07	0.830471					intronic	FBXO17							F-box protein 17	A-549	kidney
chr19	40073865	40073865	A	G	rs1433106	N	1.48277209178e-07	0.747204					intergenic
chr19	40721877	40721877	G	C	rs8106744	N	0.000909123569727	0.76238					downstream	MAP3K10 TTC9B
chr19	41036491	41036491	G	A	rs111741904	N	0.486632794142	0.320487					5-UTR	SPTBN4	NM_025213							Karpas-707	cerebral cortex
chr19	41038574	41038574	G	A	rs814501	N	3.61261709259e-06	0.322684	N	P	N	N	nonsynonymous SNV	SPTBN4	NM_020971 NM_025213	19,2	3991,19	1331,7	G=>S,G=>S			Karpas-707	cerebral cortex
chr19	41077891	41077891	C	T	rs8101070	N	6.46347252768e-05	0.30651					intronic	SPTBN4								Karpas-707	cerebral cortex
chr19	41350664	41350664	A	T	rs1809810	N	2.04798666914e-09	0.986422					nonsynonymous SNV	CYP2A6	NM_000762	8	1175	392	F=>Y	TEGAFUR, POOR METABOLISM OF CYP2A6*11		HL-60	liver
chr19	41383799	41383799	G	A	rs3869579	N	0.00874247867614	0.519169	D	D	D	N	nonsynonymous SNV	CYP2A7	NM_000764 NM_030589	6,5	931,778	311,260	R=>C,R=>C			A-431	liver
chr19	41386136	41386136	A	C	rs4142867	N	0.000541743764188	0.519169	N	N	N	N	nonsynonymous SNV	CYP2A7	NM_000764 NM_030589	4,3	507,354	169,118	D=>E,D=>E			A-431	liver
chr19	41386486	41386487	CA	AG		N	0.0195694863796						nonframeshift substitution	CYP2A7	NM_000764 NM_030589	3,2	390,237					A-431	liver
chr19	41386494	41386494	A	C	rs3815710	N	2.23429851758e-05	0.514976	N	N	N	N	nonsynonymous SNV	CYP2A7	NM_000764 NM_030589	3,2	383,230	128,77	L=>R,L=>R			A-431	liver
chr19	41388707	41388707	T	C	rs3797218	N	5.22786240253e-06	0.514177					upstream	CYP2A7								A-431	liver
chr19	41903220	41903220	G	A	rs10853751	N	0.486632794142	0.614417	N	N	N	N	nonsynonymous SNV	EXOSC5	NM_020158	1	14	5	T=>M			HEK-293	lymph node
chr19	41919944	41919944	A	C	rs3213861	N	1.66474819707e-05	0.616014					intronic	BCKDHA							branched chain ketoacid dehydrogenase E1, alpha polypeptide	U-266/70	heart muscle
chr19	41928867	41928875	GCCCACACT	GCCCCACACT		D	0.570549249649						intronic	BCKDHA							branched chain ketoacid dehydrogenase E1, alpha polypeptide	U-266/70	heart muscle
chr19	41931454	41931458	AGGCC	AGGCCAGGGCCGGGGCC		N	1.14649619718e-05						3-UTR	B3GNT8	NM_198540						UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8	HMC-1	duodenum
chr19	4294623	4294623	C	A	rs58237134	N	0.000133773006382	0.178514	N	N	N	N	nonsynonymous SNV	TMIGD2	NM_001169126 NM_001308232 NM_144615	4,3,4	503,143,503	168,48,168	W=>L,W=>L,W=>L			HEL	lymph node
chr19	4302504	4302504	C	G	rs888933	N	2.56455656711e-08	0.382987					upstream	TMIGD2								HEL	lymph node
chr19	4306311	4306311	T	C	rs4807578	N	2.02779943947e-07	0.583267					synonymous SNV	FSD1	NM_024333	3	228	76	R=>R		fibronectin type 3 and SPRY domain-containing protein	SH-SY5Y	cerebral cortex
chr19	43243217	43243218	AA	GG		N	0.000141227952554						nonframeshift substitution	PSG3	NM_021016	2	88					U-2197	placenta
chr19	43243248	43243248	G	A	rs12185500	N	1.26297507563e-07	0.656749					intronic	PSG3								U-2197	placenta
chr19	43371157	43371157	C	G	rs1058817	N	0.000705114856828	0.403754					3-UTR	PSG1	NM_001184825 NM_001184826							U-2197	placenta
chr19	43382368	43382368	T	G	rs707745	N	0.000228171425988	0.432308	N	N	N	N	nonsynonymous SNV	PSG1	NM_001184826 NM_006905 NM_001184825 NM_001297773	2,2,2,2	127,127,127,127	43,43,43,43	T=>P,T=>P,T=>P,T=>P			U-2197	placenta
chr19	43382558	43382585	AACACACACACACACACACACACAAAAG	AACACACACACACACACACACAAAAG		N	0.0108073400334						intronic	PSG1								U-2197	placenta
chr19	43420451	43420451	G	C	rs3198831	N	1.48155886563e-05	0.453474	N	N	N	N	nonsynonymous SNV	PSG6	NM_001031850 NM_002782	2,2	253,253	85,85	H=>D,H=>D			U-2197	placenta
chr19	44050195	44050195	C	T	rs25479	N	0.00202819029801	0.289337					intronic	XRCC1							X-ray repair complementing defective repair in Chinese hamster cells 1	MOLT-4	ovary
chr19	44055726	44055726	T	C	rs25487	N	1.74356353e-06	0.739617	N	N	N	N	nonsynonymous SNV	XRCC1	NM_006297	10	1196	399	Q=>R		X-ray repair complementing defective repair in Chinese hamster cells 1	MOLT-4	ovary
chr19	44971647	44971647	C	G	rs2571060	N	3.52080498089e-08	0.739816					intergenic
chr19	45021210	45021210	G	A	rs10414398	N	0.000127228166093	0.1873		D	D		nonsynonymous SNV	CEACAM20	NM_001102600 NM_001102597	6,6	1106,1106	369,369	S=>F,S=>F		carcinoembryonic antigen-related cell adhesion molecule 20
chr19	45029208	45029208	G	A	rs10408247	N	0.000168579121237	0.290535		N	N		nonsynonymous SNV	CEACAM20	NM_001102600 NM_001102599 NM_001102598 NM_001102597	2,2,2,2	122,122,122,122	41,41,41,41	A=>V,A=>V,A=>V,A=>V		carcinoembryonic antigen-related cell adhesion molecule 20
chr19	45186965	45186965	G	C	rs2289494	N	3.95648062923e-11	0.860823					3-UTR	CEACAM19	NM_001127893 NM_020219							TIME	skin
chr19	4525046	4525046	A	G	rs1610090	N	5.64503821465e-09	0.847244	N	N	N	N	nonsynonymous SNV	PLIN5	NM_001013706	7	763	255	C=>R			BEWO	salivary gland
chr19	45267451	45267455	GAGAT	GAGAAGAT		N	1.39176435709e-07						intergenic
chr19	45322744	45322744	A	G	rs1135062	N	1.48420690493e-06	0.270367	N	N	N	N	nonsynonymous SNV	BCAM	NM_005581 NM_001013257	12,12	1615,539,1615,539	539,539	T=>A,T=>A	BLOOD GROUP--LUTHERAN NULL	basal cell adhesion molecule	HaCaT	kidney
chr19	45737837	45737837	A	C	rs346748	N	1.95034208446e-05	0.36262					upstream	EXOC3L2								HEL	kidney
chr19	45911309	45911342	CAAAAAAAAACAAAAAAAAAATCAAAAAACCTTC	CAAAAAAAAAACAAAAAAAAAAACAAAAAACCTTC		D	0.664897859097						3-UTR	ERCC1	NM_001166049 NM_001983							WM-115	heart muscle
chr19	45911309	45911342	CAAAAAAAAACAAAAAAAAAATCAAAAAACCTTC	CAAAAAAAAACAAAAAAAAATCAAAAAACCTTC		D	0.664897859097						3-UTR	ERCC1	NM_001166049 NM_001983							WM-115	heart muscle
chr19	46213665	46213689	GAAAAAAAAAAAAAAAAAAATCTTG	GAAAAAAAAAAAAAAAAATCTTG		N	0.0107999052852						downstream	FBXO46							F-box protein 46	HeLa	spleen
chr19	47736216	47736216	T	C	rs2032809	N	0.486632794142	0.668331					upstream	BBC3								NB-4	colon
chr19	47777872	47777872	G	A	rs75900606	N	0.238315120339	0.511981					upstream	INAFM1
chr19	48182371	48182371	C	T	rs57319999	N	0.00481736566871	0.179113					intronic	GLTSCR1							glioma tumor suppressor candidate region gene 1	SiHa	ovary
chr19	48184474	48184474	C	T	rs3745762	N	4.06130908459e-07	0.346246	N	N	N	N	nonsynonymous SNV	GLTSCR1	NM_015711	6	2047	683	P=>S		glioma tumor suppressor candidate region gene 1	SiHa	ovary
chr19	4844665	4844672	TCCCCTCA	TCCCTCA		D	0.968319296837						intronic	PLIN3							perilipin 3	U-2197	esophagus
chr19	4859937	4859937	T	C	rs8289	N	3.60239447161e-08	0.633786	N	N	N	N	nonsynonymous SNV	PLIN3	NM_001164194 NM_005817 NM_001164189	3,3,3	166,166,166	56,56,56	I=>V,I=>V,I=>V		perilipin 3	U-2197	esophagus
chr19	48706202	48706202	C	G	rs1965756	N	1.05575448384e-09	0.823482					intergenic
chr19	48736706	48736706	G	A	rs4802449	N	4.91558530484e-05	0.398762					intronic	CARD8								NB-4	lymph node
chr19	48737551	48737551	T	C	rs2288877	N	0.000242265159613	0.269768					intronic	CARD8								NB-4	lymph node
chr19	48737764	48737764	A	G	rs2288876	N	5.61353226658e-05	0.269369					synonymous SNV	CARD8	NM_001184902 NM_001184903 NM_001184900 NM_001184901 NM_014959	6,4,3,3,4	246,246,246,96,96	82,82,82,32,32	L=>L,L=>L,L=>L,L=>L,L=>L			NB-4	lymph node
chr19	4875765	4875765	G	T	rs2602701	N	2.02295709073e-07	0.590455					intergenic
chr19	48949766	48949766	C	G	rs929743	N	0.000667339831125	0.663538					intronic	GRWD1							glutamate-rich WD repeat containing 1	NB-4	lymph node
chr19	4909629	4909629	C	G	rs8103849	N	0.486632794142	0.350639					5-UTR	UHRF1	NM_001048201						ubiquitin-like, containing PHD and RING finger domains, 1
chr19	49102782	49102782	G	A	rs10410524	N	2.77747780331e-08	0.442891					downstream	SULT2B1							sulfotransferase family, cytosolic, 2B, member 1	CAPAN-2	esophagus
chr19	49102814	49102814	G	A	rs10415861	N	0.486632794142	0.303115					downstream	SULT2B1							sulfotransferase family, cytosolic, 2B, member 1	CAPAN-2	esophagus
chr19	49106995	49106995	G	A	rs3745728	N	1.58098264365e-05	0.182508	N	D	P	N	nonsynonymous SNV	FAM83E	NM_017708	4	932	311	P=>L		family with sequence similarity 83, member E	CAPAN-2	colon
chr19	4910889	4910889	G	T	rs2261988	N	0.0089443102479	0.319888					exonic	UHRF1							ubiquitin-like, containing PHD and RING finger domains, 1
chr19	49116359	49116359	T	C	rs447802	N	6.31302649046e-11	0.550919	N	N	N	N	nonsynonymous SNV	FAM83E	NM_017708	1	271,91	91	T=>A		family with sequence similarity 83, member E	CAPAN-2	colon
chr19	49119900	49119936	CCAGCACAGCACAGCACAGCACAGCACAGCACAGCAC	CCAGCACAGCACAGCACAGCACAGCACAGCACAGCACAGCACAGCACAGCAC		N	0.308455854654						intronic	RPL18								NB-4	ovary
chr19	49120434	49120434	C	T	rs369880	N	0.00303237978369	0.225439					intronic	RPL18								NB-4	ovary
chr19	49122248	49122248	T	C	rs3094287	N	0.486632794142	0.554912					intronic	RPL18								NB-4	ovary
chr19	49131764	49131767	AAGA	AAGAGA		N	0.0350917689502						intronic	SPHK2							sphingosine kinase 2	NB-4	kidney
chr19	49137897	49137908	GCCCCCCTCGCG	GCCCCCTCGCG		N	0.486632794142						intronic	DBP								NB-4	salivary gland
chr19	49164740	49164740	T	C	rs281391	N	8.12700081119e-30	0.606829					ncRNA	SEC1P
chr19	49442933	49442933	T	C	rs2270939	N	1.20972492823e-06	0.453075					synonymous SNV	DHDH	NM_014475	4	594	198	S=>S		dihydrodiol dehydrogenase (dimeric)	U-266/84	kidney
chr19	49445817	49445817	T	C	rs11666105	N	5.91904381508e-06	0.453474	N	N	N	N	nonsynonymous SNV	DHDH	NM_014475	5	740	247	V=>A		dihydrodiol dehydrogenase (dimeric)	U-266/84	kidney
chr19	49540093	49540093	A	C	rs10853805	N	0.017226068303	0.649161					5-UTR	CGB1	NM_033377							BEWO	placenta
chr19	49556953	49556953	C	G	rs33961691	N	8.47233309287e-07	0.517173					downstream	CGB7								BEWO	placenta
chr19	49558678	49558678	T	G	rs35000456	N	0.00395854376256	0.267372					5-UTR	CGB7	NM_033142							BEWO	placenta
chr19	49559329	49559329	G	A	rs3810179	N	0.000733103544917	0.499002					upstream	CGB7								BEWO	placenta
chr19	49930295	49930295	C	G	rs73053944	N	0.0980466157198	0.0682907					nonsynonymous SNV	GFY	NM_001195256	1	608	203	T=>S			SCLC-21H	testis
chr19	49944730	49944732	CAG	CG		D	0.936983466148						5-UTR	SLC17A7	NM_020309						solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7	HMC-1	cerebral cortex
chr19	50003708	50003708	T	C	rs2914670	N	0.0612481683493	1					downstream	MIR150 RPS11
chr19	50162909	50162909	C	G	rs7251	N	6.33284162177e-06	0.484625	N	N	N	D	nonsynonymous SNV	IRF3	NM_001571 NM_001197125 NM_001197123 NM_001197126 NM_001197124 NM_001197127 NM_001197122 NM_001197128	8,7,8,6,7,6,8,5	1280,842,1175,842,899,461,1296,461	427,281,392,281,300,154,432,154	S=>T,S=>T,S=>T,S=>T,S=>T,S=>T,E=>D,S=>T		interferon regulatory factor 3	U-266/70	lymph node
chr19	50167726	50167726	C	G	rs2304207	N	0.486632794142	0.115016					nonsynonymous SNV	IRF3	NM_001197123	2	34	12	V=>L		interferon regulatory factor 3	U-266/70	lymph node
chr19	50168871	50168871	G	A	rs2304206	N	0.0	0.373003					5-UTR	BCL2L12	NM_001040668 NM_001282516 NM_001282517 NM_001282519 NM_001282520 NM_001282521 NM_138639						BCL2-like 12 (proline rich)	HEK-293	lymph node
chr19	50169020	50169020	T	C	rs2304204	N	1.09586144866e-16	0.402756					5-UTR	BCL2L12	NM_001040668 NM_001282516 NM_001282517 NM_001282519 NM_001282520 NM_001282521 NM_138639 NM_001197122 NM_001197123 NM_001197124 NM_001197125 NM_001197126 NM_001197127 NM_001197128 NM_001571						BCL2-like 12 (proline rich)	HEK-293	lymph node
chr19	5070795	5070795	A	G	rs730292	N	0.0111965080723	0.0479233					intronic	KDM4B							lysine (K)-specific demethylase 4B	U-266/70	thyroid gland
chr19	51164996	51165014	TCACACACACACACACACT	TCACACACACACACACT		N	3.69445078832e-05						3-UTR	SHANK1	NM_016148						SH3/ankyrin domain gene 1	REH	cerebral cortex
chr19	51263296	51263296	C	A	rs4802739	N	0.486632794142	0.50599					intergenic
chr19	51288968	51288970	GTC	GC		N	0.0318690612912						ncRNA	LOC105372440
chr19	51412365	51412371	TGGGGCT	TGGGCT		N	0.204172328115						intronic	KLK4								A-431	prostate
chr19	51446077	51446077	C	G	rs2659089	N	0.000992817338556						downstream	KLK5							kallikrein related-peptidase 5	A-431	skin
chr19	51539316	51539316	G	A	rs2691211	N	9.90522996958e-10	1					intergenic
chr19	51630482	51630482	C	A	rs2258983	N	1.73749685928e-05	0.67492	N	N	N	N	nonsynonymous SNV	SIGLEC9	NM_014441 NM_001198558	4,4	944,944	315,315	A=>E,A=>E			Karpas-707	appendix
chr19	51715345	51715345	C	T	rs61730558	N	1.09802294901e-06	0.0738818					intergenic
chr19	518957	518957	C	A	rs117112129	N	0.486632794142	0.0559105	N	D	P	N	nonsynonymous SNV	TPGS1	NM_033513	2	407	136	P=>Q		tubulin polyglutamylase complex subunit 1	U-266/70	adipose tissue
chr19	52803669	52803676	CTGTGTGA	CTGTGA		D	0.999022722244						frameshift substitution	ZNF480	NM_001297624 NM_144684	2,2	4,4					HL-60	colon
chr19	52887145	52887152	TAAAAATC	TAAAATC		N	2.58935451711e-05						frameshift substitution	ZNF880	NM_001145434	4	312					RH-30	thyroid gland
chr19	52887246	52887253	TCAACAAT	TCAACAACAAT		N	3.14556818921e-05						nonframeshift substitution	ZNF880	NM_001145434	4	413					RH-30	thyroid gland
chr19	52888620	52888620	T	G	rs3170100	N	8.28072224976e-05	0.416733					3-UTR	ZNF880	NM_001145434							RH-30	thyroid gland
chr19	53015487	53015493	AGGAGAA	AGAGAA		N	0.144445672631						3-UTR	ZNF578	NM_001099694							U-266/84	testis
chr19	53015742	53015742	C	G	rs329939	N	0.00324801006354	0.165535					3-UTR	ZNF578	NM_001099694							U-266/84	testis
chr19	53019376	53019377	TG	CA		N	0.00206153653562						3-UTR	ZNF578	NM_001099694							U-266/84	testis
chr19	53056953	53056953	G	A	rs329965	N	2.84959751298e-05	0.217252	N	P	P	N	nonsynonymous SNV	ZNF808	NM_001039886	5	784	262	D=>N			RT-4	thyroid gland
chr19	53073564	53073564	G	T	rs75660813	N	0.486632794142	0.134385					5-UTR	ZNF701	NM_018260							RT-4	lymph node
chr19	53087132	53087140	TAATAAATG	TAATG		D	0.566096246243						3-UTR	ZNF701	NM_018260 NM_001172655							RT-4	lymph node
chr19	53087149	53087149	T	A	rs111274688	N	0.00793346669525	0.128794					3-UTR	ZNF701	NM_018260 NM_001172655							RT-4	lymph node
chr19	53138422	53138422	A	G	rs10775556	N	0.00175858102739	0.554313					5-UTR	ZNF83	NM_001277951							RT-4	ovary
chr19	53193770	53193770	A	G	rs3745108	N	0.0813117995858	0.598842					5-UTR	ZNF83	NM_001277945 NM_001277946 NM_001277947 NM_001277948 NM_001277949							RT-4	ovary
chr19	53209553	53209554	GG	AT		N	2.47343155024e-06						nonframeshift substitution	ZNF611	NM_030972 NM_001161499 NM_001161500 NM_001161501	7,6,5,5	754,754,754,547					RT-4	gallbladder
chr19	53301876	53301884	ATCCTCCTA	ATCCTA		D	0.914032161236						3-UTR	ZNF28	NM_006969							RT-4	urinary bladder
chr19	53343534	53343535	GT	AC		N	0.320124953985						3-UTR	ZNF468	NM_001008801 NM_001277120							RT-4	thyroid gland
chr19	53344118	53344118	C	G	rs10419826	N	0.230721130967	0.579872		N	N	N	nonsynonymous SNV	ZNF468	NM_001008801	4	1429	477	G=>R			RT-4	thyroid gland
chr19	53352568	53352568	A	G	rs7253133	N	0.000222945658606	0.264177					intronic	ZNF468								RT-4	thyroid gland
chr19	53357306	53357308	CTG	CATG		D	0.999870181084						intronic	ZNF468								RT-4	thyroid gland
chr19	53418420	53418420	A	C	rs4803020	N	0.000682630052324	0.257788					intronic	ZNF888
chr19	53421387	53421387	C	T	rs76201701	N	0.0223753191531	0.0457268					upstream	ZNF888
chr19	53454543	53454543	G	A	rs11084210	N	4.12649114878e-06	0.146166	N	N	N	N	nonsynonymous SNV	ZNF816	NM_001202456 NM_001202457 NM_001031665	4,4,5	485,485,485	162,162,162	S=>L,S=>L,S=>L			RT-4	prostate
chr19	53577419	53577419	G	C	rs8105668	N	1.21711907219e-09	0.759984	N	N	N	N	nonsynonymous SNV	ZNF160	NM_001102603 NM_198893 NM_033288	6,6,5	245,245,245	82,82,82	P=>R,P=>R,P=>R			RT-4	spleen
chr19	53611802	53611802	T	G	rs61733666	N	8.32404475659e-05	0.0197684	D	P	N	N	nonsynonymous SNV	ZNF415	NM_018355 NM_001164309 NM_001136038	4,4,4	1496,1496,1496	499,499,499	N=>T,N=>T,N=>T			RT-4	testis
chr19	53667637	53667637	C	T	rs4803054	N	2.037736067e-06	0.517772					3-UTR	ZNF665	NM_024733							MOLT-4	ovary
chr19	53760825	53760825	C	T	rs2914370	N	3.36878969165e-08	0.557508					upstream	VN1R2								A-431	testis
chr19	53916061	53916061	T	C	rs10404435	N	1.72846648638e-06	0.771765					downstream	ZNF765								RT-4	ovary
chr19	53970930	53970930	T	C	rs1968829	N	0.212004676461	0.379792					upstream	ZNF813								RT-4	prostate
chr19	54058931	54058931	C	G	rs6509790	N	1.38449024689e-06	0.730032					intronic	ZNF331								HEK-293	adrenal gland
chr19	54177273	54177273	T	C	rs7258128	N	1.18445395856e-05	0.457867					upstream	MIR498
chr19	54182249	54182249	T	C	rs7256893	N	3.38076897606e-05	0.285343					upstream	MIR515-1 MIR515-2 MIR519E
chr19	54257185	54257185	C	G	rs611356	N	2.01017385848e-07	0.754593					upstream	MIR527
chr19	54257190	54257191	AC	GA		N	0.000754279200919						upstream	MIR527
chr19	54261669	54261669	G	T	rs683060	N	6.39630286514e-08	0.836861					downstream	MIR1283-2
chr19	54265779	54265791	GTTTTTTTTTCCA	GTTTTTTTTCCA		N	0.0115886591375						downstream	MIR519A2
chr19	54291738	54291763	GAAAAAAAAAAAAAAAAACAGCAGCT	GAAAAAAAAAAAAAAAAAAACAGCAGCT		N	0.00185179500841						upstream,downstream	MIR371B MIR373;MIR371A MIR372
chr19	54291738	54291763	GAAAAAAAAAAAAAAAAACAGCAGCT	GAAAAAAAAAAAAAAACAGCAGCT		N	0.00185179500841						upstream,downstream	MIR371B MIR373;MIR371A MIR372
chr19	54465584	54465586	GCG	ACA		N	0.0122885853052						upstream	CACNG8								HMC-1	cerebral cortex
chr19	54724387	54724389	AGC	GGG		D	0.835022509098						intronic	LILRB3							leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3	TIME	appendix
chr19	54724407	54724407	C	T	rs1132608	N	0.00994156207889	0.354433					intronic	LILRB3							leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3	TIME	appendix
chr19	54784928	54784928	T	C	rs13347079	N	0.000195486922166	0.194089					5-UTR	LILRB2	NM_001080978 NM_001278404 NM_005874							U-937	appendix
chr19	54843575	54843575	C	G	rs1205320	N	0.486632794142	0.520567					downstream	LILRA4								HMC-1	lymph node
chr19	54843589	54843589	T	C	rs1205321	N	7.94429870439e-05	0.561302					downstream	LILRA4								HMC-1	lymph node
chr19	54870191	54870191	T	A	rs111949142	N	0.0307178981602	0.0986422					intronic	LAIR1							leukocyte-associated Ig-like receptor 1	Karpas-707	bone marrow
chr19	55141954	55141954	G	A	rs3760860	N	5.86013371162e-09	0.461062					5-UTR	LILRB1	NM_001081638 NM_001081639							HDLM-2	appendix
chr19	55143156	55143157	TG	CA		N	0.000467305304483						nonframeshift substitution	LILRB1	NM_001278399 NM_001278398 NM_006669 NM_001081639 NM_001081638 NM_001081637	4,4,5,4,4,4	276,276,276,276,276,276					HDLM-2	appendix
chr19	55175009	55175009	G	T	rs11540761	N	0.000295253674267	0.195487	N	D	D	N	nonsynonymous SNV	LILRB4	NM_001278426 NM_001278427 NM_001278430 NM_001278428	2,2,2,2	54,54,54,54	18,18,18,18	R=>S,R=>S,R=>S,R=>S		leukocyte immunoglobulin-like receptor, subfamily B, member 4	Karpas-707	lymph node
chr19	55207898	55207900	TTT	ATG		N	0.000589940173086						intergenic
chr19	55208106	55208106	A	G	rs4806808	N	9.86967023664e-08	0.759185					intergenic
chr19	55208353	55208353	A	G	rs1972789	N	4.09156353243e-09	0.855831					intergenic
chr19	55208366	55208366	T	A	rs4806809	N	3.6275682902e-08	0.758986					intergenic
chr19	55972950	55972950	T	G	rs2303088	N	0.299564570189	0.695288					5-UTR	ISOC2	NM_001136201 NM_001136202 NM_024710							HEK-293	kidney
chr19	56282938	56282938	G	A	rs1820105	N	2.37500644289e-05	0.49401					upstream	RFPL4AL1								U-2-OS	spleen
chr19	56573610	56573610	T	C	rs3097884	N	5.48676259982e-09	0.768371					downstream	NLRP5							NLR family, pyrin domain containing 5	U-2-OS	testis
chr19	56989191	56989191	G	A	rs10425729	N	0.254759669304	0.48762					upstream	ZNF667 ZNF667-AS1
chr19	57050065	57050065	C	G	rs73629994	N	0.416636377573	0.779153					upstream	ZFP28							zinc finger protein 28	RH-30	ovary
chr19	571397	571397	G	A	rs28989772	N	0.0620078146458	0.0636981					5-UTR	BSG	NM_198590 NM_198591					BLOOD GROUP--OK	basigin	U-87-MG	heart muscle
chr19	57734632	57734632	C	T	rs2058082	N	6.4736659624e-06	0.619808					downstream	ZNF264								HEK-293	testis
chr19	5778517	5778517	A	T	rs2305925	N	4.68255620945e-06	0.294129	D	N	N	N	nonsynonymous SNV	CATSPERD	NM_152784	22	2227	743	T=>S			HEL	testis
chr19	5783905	5783905	G	A	rs3745640	N	3.13932133622e-07	0.307508	D	D	P	N	nonsynonymous SNV	PRR22	NM_001134316	3	353	118	P=>L			HMC-1	testis
chr19	5785113	5785113	C	T	rs3826798	N	1.46140689594e-06	0.311502					upstream,downstream	PRR22;DUS3L
chr19	5791167	5791167	T	C	rs2290776	N	0.486632794142	0.454073					5-UTR	DUS3L	NM_001161619 NM_020175						dihydrouridine synthase 3-like (S. cerevisiae)	U-266/70	bone marrow
chr19	588934	588934	T	C	rs3814894	N	1.44368686961e-06	0.521166					upstream	HCN2							hyperpolarization-activated, cyclic nucleotide-gated K+ 2	U-87-MG	cerebral cortex
chr19	589315	589315	A	C	rs72972190	N	2.13930011483e-08	0.0690895					upstream	HCN2							hyperpolarization-activated, cyclic nucleotide-gated K+ 2	U-87-MG	cerebral cortex
chr19	5904069	5904069	G	A	rs6510862	N	0.00662776920944	0.722244					upstream	NDUFA11 VMAC
chr19	6156483	6156483	T	C	rs4807840	N	4.78194692732e-07	0.712061		N	N	N	nonsynonymous SNV	ACSBG2	NM_001289178 NM_030924 NM_001289179 NM_001289177	5,5,5,5	428,428,428,428	143,143,143,143	V=>A,V=>A,V=>A,V=>A		acyl-CoA synthetase bubblegum family member 2	HEL	testis
chr19	616509	616509	G	A	rs55810748	N	2.11372480408e-06	0.202676					3-UTR	HCN2	NM_001194						hyperpolarization-activated, cyclic nucleotide-gated K+ 2	U-87-MG	cerebral cortex
chr19	617195	617195	C	T	rs11670098	N	0.130528792739	0.228634					downstream	HCN2 POLRMT
chr19	639161	639161	C	T	rs111509883	N	0.486632794142	0.0451278					upstream	FGF22							fibroblast growth factor 22	AN3-CA	skin
chr19	648256	648256	G	A		D	0.99004560709						stopgain	RNF126	NM_194460	9	808	270	R=>X			U-266/70	testis
chr19	6702598	6702598	G	A	rs406514	N	3.15716242767e-05	0.814896					intronic	C3							complement component 3	Hep-G2	liver
chr19	6737481	6737481	T	C	rs340138	N	0.187082201242	0.886581	N	N	N	N	nonsynonymous SNV	GPR108	NM_001080452	1	107	36	Q=>R		G protein-coupled receptor 108	Karpas-707	thyroid gland
chr19	6821625	6821625	C	T	rs28617395	N	7.56910230848e-05	0.0928514					intronic	VAV1							vav 1 oncogene	MOLT-4	lymph node
chr19	6903920	6903920	A	G	rs443658	N	4.15774229623e-05	0.432708	N	D	D	D	nonsynonymous SNV	ADGRE1	NM_001256254 NM_001256253 NM_001974 NM_001256252	4,7,7,6	338,761,761,605	113,254,254,202	N=>S,N=>S,N=>S,N=>S
chr19	7116963	7116963	T	C	rs1051690	N	6.05537575638e-09	0.877396					3-UTR	INSR	NM_000208 NM_001079817						insulin receptor	Karpas-707	ovary
chr19	7660763	7660787	AGCGGCGGCGGCGGCGGCGGCGGCA	AGCGGCGGCGGCGGCGGCGGCA		D	0.888342738152						upstream	CAMSAP3							calmodulin regulated spectrin-associated protein family, member 3	CACO-2	skin
chr19	7733793	7733793	C	G	rs1862513	N	0.0248578917235						upstream	RETN								NB-4	bone marrow
chr19	7743879	7743879	C	T	rs4804766	N	0.00117584166583	0.279153					intronic	MCEMP1
chr19	7747293	7747293	T	G	rs6952	N	1.32970310318e-08	0.358027	N	N	N	N	nonsynonymous SNV	TRAPPC5	NM_001042462 NM_001042461 NM_174894	2,2,2	154,154,154	52,52,52	S=>A,S=>A,S=>A			PC-3	testis
chr19	7755285	7755285	A	G	rs28364072	D	0.943088591099	0.397764					intronic	FCER2								HDLM-2	spleen
chr19	7761494	7761498	CTTAG	CAG		D	0.977330565453						intronic	FCER2								HDLM-2	spleen
chr19	7763248	7763248	G	A	rs2228137	N	2.7353306109e-07	0.203674	D	D	P	N	nonsynonymous SNV	FCER2	NM_001207019 NM_002002 NM_001220500	3,4,4	181,184,184	61,62,62	R=>W,R=>W,R=>W			HDLM-2	spleen
chr19	8129608	8129608	T	C	rs4804255	N	3.51722860614e-06	0.63738					downstream	FBN3								REH	lung
chr19	867872	867872	G	A	rs34828577	N	7.9095940464e-07	0.40016					downstream	MED16							mediator complex subunit 16	U-266/70	ovary
chr19	9020153	9020154	CA	CG		N	5.45662696823e-05						nonframeshift substitution	MUC16	NM_024690	21	37341				mucin 16	HeLa	uterus
chr19	9020153	9020154	CA	TG		N	5.45662696823e-05						nonframeshift substitution	MUC16	NM_024690	21	37341				mucin 16	HeLa	uterus
chr19	920642	920642	T	A	rs350132	N	5.14143778219e-07	0.783946	N	N	N	N	nonsynonymous SNV	KISS1R	NM_032551	5	1091	364	L=>H		KISS1 receptor	RPMI-8226	cerebral cortex
chr19	9236015	9236015	T	C	rs34125139	N	1.14528756967e-05	0.423722					downstream	OR7G3								A-431	adipose tissue
chr2	106209385	106209385	A	C	rs1126240	N	1.03295161313e-09	0.595248					downstream	LOC285000
chr2	106810994	106810994	G	A	rs11887738	N	0.486632794142	0.974241					upstream	UXS1							UDP-glucuronate decarboxylase 1	BEWO	kidney
chr2	106920429	106920429	G	T	rs7580166	N	1.55911845923e-06	0.805312					intergenic
chr2	10924524	10924524	T	C	rs1198873	N	3.36794014899e-09	0.557308					3-UTR	ATP6V1C2	NM_001039362 NM_144583						ATPase, H+ transporting, lysosomal V1 subunit C2	BEWO	skin
chr2	109745176	109745176	G	A	rs11681142	N	7.99008739705e-06	0.953474					ncRNA	SH3RF3-AS1
chr2	113823626	113823626	T	C	rs12475161	N	7.53958602218e-06	0.715256					intergenic
chr2	118949128	118949128	T	A	rs3849333	N	1.59474922157e-08	0.901158					intergenic
chr2	11905636	11905656	GTTTTTTTTTGTCTGTTTTCC	GTTTTTTTTGTCTGTTTTCC		D	0.912479281425						intronic	LPIN1							lipin 1	U-266/70	testis
chr2	119928277	119928277	A	G	rs4322838	N	1.2053047449e-09	0.998003					intergenic
chr2	120418594	120418594	C	A	rs1879711	N	4.33491209151e-07	0.739417					intergenic
chr2	120436681	120436681	A	G	rs2272054	N	0.103353172541	0.871805					upstream	TMEM177							transmembrane protein 177	NTERA-2	duodenum
chr2	122042750	122042750	A	T	rs13415738	N	0.033097345382	0.477636					5-UTR	TFCP2L1	NM_014553						transcription factor CP2-like 1	RT-4	salivary gland
chr2	123831418	123831418	T	C	rs11694990	N	8.26117830002e-05	0.310104					intergenic
chr2	124439681	124439681	A	G	rs2670606	N	2.94835786008e-07	0.849441					intergenic
chr2	130254891	130254891	A	G	rs2084937	N	1.80134769323e-08	0.987819					intergenic
chr2	132151997	132151997	T	C	rs1976952	N	9.71754343482e-05	0.733027					intergenic
chr2	132533457	132533459	AGA	AGGG		N	0.00214449572377						intergenic
chr2	133015576	133015576	T	C	rs10175641	N	0.486632794142	0.170727					upstream	ANKRD30BL MIR663B
chr2	133015810	133015811	AG	GG		N	0.305469334126						upstream	ANKRD30BL								REH	testis
chr2	133015885	133015886	AG	AA		N	0.00428532762453						upstream	ANKRD30BL								REH	testis
chr2	133015885	133015886	AG	GA		N	0.00428532762453						upstream	ANKRD30BL								REH	testis
chr2	133016581	133016585	CAGTG	GAGTA		D	1.0						intergenic
chr2	133016581	133016585	CAGTG	GAGTG		D	1.0						intergenic
chr2	136956640	136956657	GAAAAAAAAAAAAGATGC	GAAAAAAAAAAAAAGATGC		D	0.619050204754						intergenic
chr2	137401769	137401769	T	C	rs1446103	N	1.17940726341e-06	0.572085					intergenic
chr2	139259222	139259222	A	G	rs62161711	N	0.486632794142	0.74381					upstream	SPOPL							speckle-type POZ protein-like	U-266/70	lymph node
chr2	139658953	139658953	A	C	rs12473352	N	5.2033897191e-09	0.783946					intergenic
chr2	144193151	144193169	CTTTTTTTTTTTTTTGCAG	CTTTTTTTTTTTTTTTTGCAG		N	0.0693475902081						intronic	ARHGAP15							Rho GTPase activating protein 15	THP-1	lymph node
chr2	148252587	148252587	T	C	rs1898708	N	7.77390685158e-09	0.966254					intergenic
chr2	148252636	148252636	C	A	rs2382042	N	7.24804083418e-09	0.966254					intergenic
chr2	149582879	149582879	C	T	rs58237624	N	0.000132583736558	0.144569					intergenic
chr2	149853960	149853960	A	G	rs6738277	N	3.14630277387e-09	0.631589					intronic	KIF5C							kinesin family member 5C	SCLC-21H	cerebral cortex
chr2	151900390	151900435	TAAAAACAAAAACAAAAACAAAAACAAAAACAAAAACAAACCCTTT	TAAAAACAAAAACAAAAACAAAAACAAACCCTTT		N	0.47182276845						intergenic
chr2	153191655	153191655	T	G	rs10203197	N	0.0522010996938	0.941494					upstream	FMNL2							formin-like 2	BEWO	cerebral cortex
chr2	153191866	153191866	A	G	rs10200831	N	0.0183826927096	0.988419					5-UTR	FMNL2	NM_052905						formin-like 2	BEWO	cerebral cortex
chr2	158485075	158485075	G	T	rs114245489	N	0.025222774595	0.0207668					intronic	ACVR1C							activin A receptor, type IC	HDLM-2	adipose tissue
chr2	159651734	159651734	A	G	rs925781	N	5.43594474989e-11	0.681909					upstream	DAPL1							death associated protein-like 1	U-87-MG	esophagus
chr2	159663599	159663599	T	C	rs9869	N	2.10973567505e-08	0.590455	D	P	P	N	nonsynonymous SNV	DAPL1	NM_001017920	3	179	60	L=>P		death associated protein-like 1	U-87-MG	esophagus
chr2	159672252	159672252	G	A	rs61740878	N	1.34048314067e-05	0.102436					synonymous SNV	DAPL1	NM_001017920	4	243,81	81	A=>A		death associated protein-like 1	U-87-MG	esophagus
chr2	159672442	159672442	G	A	rs10016	N	4.81382667061e-09	0.445487					3-UTR	DAPL1	NM_001017920						death associated protein-like 1	U-87-MG	esophagus
chr2	160289911	160289911	A	G	rs10187471	N	0.0074945599772	0.144768					intronic	BAZ2B							bromodomain adjacent to zinc finger domain, 2B	SCLC-21H	ovary
chr2	160743040	160743040	T	A	rs2271381	N	1.44163686855e-06	0.235423	N	N	N	N	nonsynonymous SNV	LY75 LY75-CD302	NM_002349 NM_001198759 NM_001198760	5,5,5	804,804,804	268,268,268	E=>D,E=>D,E=>D
chr2	162280748	162280748	G	A	rs890076	N	1.65592410016e-17	0.758586					3-UTR	TBR1	NM_006593						T-box brain gene 1	SCLC-21H	cerebral cortex
chr2	162359983	162359983	T	C	rs12620974	N	8.53280900798e-12	0.952476					ncRNA	AHCTF1P1
chr2	162903515	162903515	A	T	rs200443496	D	0.928100466728	0.000399361	N	N	N	D	nonsynonymous SNV	DPP4	NM_001935	4	195	65	D=>E		dipeptidylpeptidase 4	PC-3	small intestine
chr2	164466039	164466054	ATTTTTTTTTTCTAAA	ATTTTTTTTTCTAAA		D	0.992351949215						3-UTR	FIGN	NM_001321825 NM_018086						fidgetin	U-138-MG	ovary
chr2	164592924	164592924	T	C	rs13417911	N	0.00581231992692	0.945288					upstream	FIGN							fidgetin	U-138-MG	ovary
chr2	165477903	165477903	G	C	rs62173895	N	0.00339287146926	0.442492					5-UTR	GRB14	NM_004490						growth factor receptor bound protein 14	TIME	liver
chr2	166535615	166535615	C	G	rs61747278	N	2.97153292195e-07	0.0131789	N	N	N	N	nonsynonymous SNV	CSRNP3	NM_001172173 NM_024969	7,5	1110,1110	370,370	D=>E,D=>E		cysteine-serine-rich nuclear protein 3	SCLC-21H	cerebral cortex
chr2	166895913	166895937	CTTTTTTTTTTTTTTTTTACCAATC	CTTTTTTTTTTTTTTTTACCAATC		N	0.437596797943						frameshift substitution	SCN1A	NM_001165964 NM_001202435 NM_006920 NM_001165963	14,16,14,14	2501,2585,2552,2585				sodium channel, voltage-gated, type I, alpha	Hep-G2	cerebral cortex
chr2	170003432	170003432	T	G	rs4667591	N	2.41021803049e-06	0.555911	D	D	D	D	nonsynonymous SNV	LRP2	NM_004525	69	12628	4210	I=>L		low density lipoprotein receptor-related protein 2	CACO-2	kidney
chr2	170403030	170403030	T	C	rs2253680	N	0.000175066204974	0.542931	N	N	N	N	exonic	FASTKD1							FAST kinase domains 1	NB-4	heart muscle
chr2	172398311	172398311	T	C	rs7586144	N	9.09489844547e-12	0.804313					intronic	CYBRD1							cytochrome b reductase 1	RH-30	thyroid gland
chr2	172411273	172411273	G	A	rs10455	N	3.60809515598e-08	0.683107	N	N	N	N	nonsynonymous SNV	CYBRD1	NM_024843 NM_001256909	4,4	797,623	266,208	S=>N,S=>N		cytochrome b reductase 1	RH-30	thyroid gland
chr2	172946315	172946315	T	G	rs788160	N	1.86774640892e-12	0.854832					3-UTR	METAP1D	NM_001322278 NM_001322279 NM_199227						methionyl aminopeptidase type 1D (mitochondrial)	K-562	ovary
chr2	173850463	173850463	A	C	rs35253091	N	0.190134763718	0.115615					intronic	RAPGEF4							Rap guanine nucleotide exchange factor (GEF) 4	U-266/84	cerebral cortex
chr2	177502520	177502520	G	C	rs2969358	N	0.00131295330357	0.927516					ncRNA	LINC01117
chr2	177714253	177714253	G	A	rs12616782	N	9.20660099268e-08	0.485623					intergenic
chr2	178417945	178417945	G	T	rs12988366	N	0.201225295663	0.890575					upstream	TTC30B							tetratricopeptide repeat domain 30B	SCLC-21H	testis
chr2	178491217	178491217	G	A	rs6723031	N	1.31082649281e-20	0.889377					3-UTR	PDE11A	NM_001077196 NM_016953 NM_001077197						phosphodiesterase 11A	Hep-G2	prostate
chr2	183580780	183580780	G	A		N	0.164492920041						5-UTR	DNAJC10	NM_001271581 NM_018981						DnaJ (Hsp40) homolog, subfamily C, member 10	RPMI-8226	uterus
chr2	190445848	190445848	G	A	rs12693542	N	0.000708682637196	0.683107					upstream	SLC40A1							solute carrier family 40 (iron-regulated transporter), member 1	HEL	ovary
chr2	190445936	190445936	C	T	rs13015236	N	1.85311673704e-05	0.511182					upstream	SLC40A1							solute carrier family 40 (iron-regulated transporter), member 1	HEL	ovary
chr2	20101222	20101227	GAAATC	GAATC		N	0.486632794142						intronic	TTC32							tetratricopeptide repeat domain 32	Karpas-707	bone marrow
chr2	201347707	201347707	G	C	rs6751614	N	1.87814226393e-08	0.707468					downstream	SPATS2L							spermatogenesis associated, serine-rich 2-like	RH-30	gallbladder
chr2	202122995	202122995	A	G	rs3769823	N	0.0432243011892	0.646366	N	N	N	N	nonsynonymous SNV	CASP8	NM_001080125	1	41	14	K=>R	CASPASE 8 DEFICIENCY	caspase 8	U-266/70	bone marrow
chr2	202151439	202151439	G	C	rs3185378	N	0.0261166822165	0.554313					3-UTR	CASP8	NM_001080124 NM_001228 NM_033355 NM_001080125 NM_033356					CASPASE 8 DEFICIENCY	caspase 8	U-266/70	bone marrow
chr2	202215492	202215492	C	G	rs13014235	N	6.09429116594e-05	0.709065	N	N	N	N	nonsynonymous SNV	ALS2CR12	NM_139163 NM_001289993 NM_001127391	3,3,3	127,127,127	43,43,43	V=>L,V=>L,V=>L		amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 12 (human)	SK-MEL-30	testis
chr2	203690387	203690387	G	A	rs1344959	N	5.73921141722e-08	0.86881					intronic	ICA1L							islet cell autoantigen 1-like	BEWO	cerebral cortex
chr2	204216255	204216278	GTTTTTTTTTTTTTTTCCTTTAGA	GTTTTTTTTTTTTTTTTCCTTTAGA		N	0.142577528954						intronic	ABI2							abl-interactor 2	AN3-CA	cerebral cortex
chr2	20837292	20837292	G	A	rs56238706	N	1.13281612357e-05	0.209465					intronic	HS1BP3							HCLS1 binding protein 3	SK-MEL-30	adrenal gland
chr2	208477852	208477852	G	A	rs2551949	N	9.27130461292e-09	0.904153	N	N	N	N	nonsynonymous SNV	METTL21A	NM_001127395 NM_145280	4,4	575,575	192,192	T=>I,T=>I		methyltransferase like 21A	NB-4	lymph node
chr2	208546034	208546034	T	C	rs10191721	N	4.14576099145e-12	0.462061					intergenic
chr2	208551727	208551727	G	A	rs10181368	N	1.43239378692e-10	0.984425					intergenic
chr2	208994697	208994697	C	T	rs2242071	N	2.58925686447e-10	0.661941					ncRNA	LOC100507443
chr2	209029192	209029192	A	C	rs2123291	N	1.25666616668e-07	0.653355					upstream,downstream	CRYGA;C2orf80
chr2	209225308	209225308	G	C	rs6435454	N	6.0317013606e-08	0.913738					intronic	PTH2R							parathyroid hormone 2 receptor	HEL	kidney
chr2	211319824	211319824	T	C	rs2287432	N	0.00037673820043	0.71226					ncRNA	LANCL1-AS1
chr2	211320041	211320063	GAAAAAAAAAAAAGGAAACAATG	GAAAAAAAAAAAAAAGGAAACAATG		D	0.975179612637						ncRNA	LANCL1-AS1
chr2	211341156	211341156	C	G	rs2287418	N	0.000420019088779	0.48103					intronic	LANCL1							LanC (bacterial lantibiotic synthetase component C)-like 1	SK-BR-3	cerebral cortex
chr2	21346604	21346604	G	T	rs312960	N	2.11555113705e-11	0.972244					upstream	TDRD15
chr2	216256615	216256615	T	C	rs6709607	N	0.00552588328719	0.689297					intronic	FN1							fibronectin 1	Hep-G2	liver
chr2	216878008	216878008	C	G	rs1864253	N	0.0168958380818	0.677117	N	N	N	N	nonsynonymous SNV	MREG	NM_018000	1	43	15	G=>R		melanoregulin	MCF-7	esophagus
chr2	219139573	219139573	G	A	rs6734242	N	2.01123562249e-08	0.958866					3-UTR	TMBIM1	NM_001321427 NM_001321428 NM_001321429 NM_001321430 NM_001321432 NM_001321433 NM_001321435 NM_001321436 NM_001321438 NM_022152							RT-4	esophagus
chr2	219350358	219350391	CAAAAAAAAAAAAAAAAAAAAAAAATTACCTAGG	CAAAAAAAAAAAAAAAAAAAAATTACCTAGG		D	0.815276145935						frameshift substitution	USP37	NM_020935	16	1666				ubiquitin specific peptidase 37	HEL	testis
chr2	220455241	220455241	A	G	rs2385535	N	1.08436417179e-07	0.843051					intergenic
chr2	220466344	220466363	GTTTTTTTTTTTTTTTCAGC	GTTTTTTTTTTTTTTTTCAGC		D	0.999998092651						frameshift substitution	STK11IP	NM_052902	4	268				serine/threonine kinase 11 interacting protein	HMC-1	testis
chr2	223535927	223535927	T	G	rs4312477	N	2.65417384071e-07	0.783546					upstream	MOGAT1								HEK-293	gallbladder
chr2	232387698	232387698	G	A	rs72991337	N	0.486632794142	0.348043					downstream	NMUR1							neuromedin U receptor 1	U-266/70	adipose tissue
chr2	232387706	232387706	A	G	rs72991338	N	0.486632794142	0.354433					downstream	NMUR1							neuromedin U receptor 1	U-266/70	adipose tissue
chr2	233924009	233924009	A	G	rs7558755	N	1.09781939095e-09	0.741414					upstream	INPP5D							inositol polyphosphate-5-phosphatase D	HMC-1	lymph node
chr2	234683892	234683892	C	T	rs4663972	N	1.51821166749e-09	0.770168					upstream	MROH2A								RT-4	testis
chr2	240725072	240725072	T	C	rs66660625	N	1.55673642439e-05	0.290136					intergenic
chr2	241525316	241525316	C	T	rs2953172	N	0.00329304998741	0.793331					ncRNA	CAPN10-AS1
chr2	242295521	242295521	A	C	rs2286279	N	0.486632794142	0.863618					upstream	FARP2							FERM, RhoGEF and pleckstrin domain protein 2	SK-MEL-30	testis
chr2	25044754	25044755	AC	GT		N	0.0781027153134						3-UTR	CENPO	NM_001199803 NM_001322101 NM_024322						centromere protein O	RH-30	testis
chr2	25945982	25945982	C	A	rs7599007	N	1.63400886777e-06	0.591454					intergenic
chr2	26952501	26952501	T	C	rs1663003	N	5.02631769539e-10	0.962859					3-UTR	KCNK3	NM_002246						potassium channel, subfamily K, member 3	SCLC-21H	adrenal gland
chr2	33788060	33788070	CTTTTTTCTCA	CTTTTCTCA		N	0.028658868745						3-UTR	RASGRP3	NM_170672 NM_001139488 NM_015376						RAS, guanyl releasing protein 3	U-266/70	lymph node
chr2	3483612	3483612	C	T	rs78864276	N	0.00726454192773	0.0423323					downstream	TRAPPC12							trafficking protein particle complex 12	MCF-7	testis
chr2	37292890	37292890	T	G	rs11903252	N	0.0178645271808	0.281949					intronic	HEATR5B							HEAT repeat containing 5B	Karpas-707	lymph node
chr2	37456032	37456032	C	T	rs2098386	N	3.83594760933e-06	0.939896	N	N	N	N	nonsynonymous SNV	CEBPZ	NM_005760	2	304	102	V=>I		CCAAT/enhancer binding protein zeta	NTERA-2	testis
chr2	37543371	37543371	A	G	rs6544066	N	0.000939112331253	0.441494					intronic	PRKD3							protein kinase D3	U-266/84	lymph node
chr2	37965516	37965516	G	T	rs72880762	N	0.000147183280205						intergenic
chr2	37965532	37965532	G	T	rs77721061	N	0.00010818130977						intergenic
chr2	37965555	37965555	G	C	rs78459989	N	0.000143574667163						intergenic
chr2	37965599	37965599	G	A	rs73929712	N	8.19076885819e-05						intergenic
chr2	37965636	37965636	G	A	rs72799788	N	0.000131433349452						intergenic
chr2	37965647	37965647	C	T	rs77903747	N	0.000125791309983						intergenic
chr2	38604351	38604351	A	G	rs3731847	N	0.486632794142	0.49361	N	N	N	N	nonsynonymous SNV	ATL2	NM_022374 NM_001135673	1,1	52,52	18,18	W=>R,W=>R		atlastin GTPase 2	HaCaT	thyroid gland
chr2	39402978	39402980	ACA	AGCA		N	0.0226913746446						intergenic
chr2	43793725	43793725	G	A	rs1158411	N	0.486632794142	0.353235	D	N	N	N	intronic	THADA							thyroid adenoma associated	MCF-7	lymph node
chr2	45236803	45236803	T	G	rs2959228	N	0.00033769471338	0.701877					upstream	SIX2							sine oculis-related homeobox 2	SCLC-21H	salivary gland
chr2	46844219	46844221	CGC	CGGC		N	0.486632794142						5-UTR	PIGF	NM_002643 NM_173074						phosphatidylinositol glycan anchor biosynthesis, class F	EFO-21	adrenal gland
chr2	47142950	47142977	GCCCCCCCCCCCCCCCCGACCTGCCCTG	GCCCCCCCGACCTGCCCTG		N	0.486632794142						5-UTR	MCFD2	NM_001171506 NM_001171509 NM_139279						multiple coagulation factor deficiency 2	U-87-MG	adrenal gland
chr2	55662790	55662790	A	G	rs10865286	N	1.18251955428e-05	0.417732					intergenic
chr2	62073918	62073918	C	T	rs58256183	N	3.40997539752e-05	0.500599					intronic	FAM161A							family with sequence similarity 161, member A	NTERA-2	testis
chr2	62689306	62689306	T	C	rs6737708	N	4.77906936247e-10	0.995407					intergenic
chr2	62788692	62788692	C	T	rs4672533	N	0.00342602375895	0.415335					intergenic
chr2	70529614	70529614	T	C	rs2952468	N	2.05561789812e-09	0.442093					upstream	FAM136A								CACO-2	duodenum
chr2	71056740	71056740	G	C	rs1548892	N	1.85551089089e-05	0.70647					downstream	CD207							CD207 antigen	AN3-CA	skin
chr2	71115000	71115000	T	G	rs7567290	N	0.00554325478151	0.71226					upstream	LINC01143
chr2	72356195	72356195	A	G	rs887844	N	2.04419217664e-10	0.544728					downstream	CYP26B1							cytochrome P450, family 26, subfamily b, polypeptide 1	U-2-OS	skin
chr2	74350475	74350475	C	G	rs3108161	N	1.25770557133e-05	0.302716					intergenic
chr2	75939031	75939031	C	G	rs143143402	N	0.00368001568131	0.174321					upstream	GCFC2								RPMI-8226	thyroid gland
chr2	85108252	85108254	GCG	GCCG		D	0.998229324818						5-UTR	TRABD2A	NM_001080824 NM_001277053 NM_001307978							BEWO	colon
chr2	8887426	8887426	A	G	rs12622593	N	0.225164964795	0.145168					intronic	KIDINS220							kinase D-interacting substrate 220	SH-SY5Y	cerebral cortex
chr2	91635413	91635413	A	C	rs2647830	N	8.95688037628e-13	0.840056					intergenic
chr2	91635422	91635422	A	G	rs2647831	N	9.80768504633e-07						intergenic
chr2	91636382	91636382	G	A	rs1839724	N	0.03690572083						intergenic
chr2	91777145	91777147	CGC	CGG		N	5.61913475394e-05						intergenic
chr2	91777145	91777147	CGC	TGG		N	5.61913475394e-05						intergenic
chr2	96987742	96987742	G	A	rs62153902	N	0.030559213832	0.300719					intergenic
chr20	137933	137933	C	G	rs1434790	N	3.00406743925e-09	0.926917					upstream	DEFB127								BEWO	kidney
chr20	1645571	1645576	TGGGAT	TGGGGAT		N	0.0071761822328						intergenic
chr20	16652322	16652322	C	A	rs6111242	N	9.91082970359e-07	0.415535					intergenic
chr20	16729654	16729656	AAG	AAGATGAG		N	0.000234850362176						intronic	OTOR							otoraplin	SK-BR-3	gallbladder
chr20	16731951	16731951	G	A	rs34747330	N	1.31552933453e-05	0.0201677					3-UTR	OTOR	NM_020157						otoraplin	SK-BR-3	gallbladder
chr20	17591210	17591217	TGGGGTGA	TAGGGGTGA		N	4.65375087515e-05						intergenic
chr20	17593984	17593984	G	A	rs1885082	N	3.11235148764e-10	0.64377					downstream	RRBP1							ribosome binding protein 1	SK-BR-3	pancreas
chr20	17594030	17594030	G	A	rs6136149	N	1.24795988654e-07	0.630591					downstream	RRBP1							ribosome binding protein 1	SK-BR-3	pancreas
chr20	17705664	17705664	G	A	rs2296905	N	1.50322302943e-05	0.244808					intronic	BANF2								CACO-2	testis
chr20	18446024	18446024	C	A	rs6111974	N	1.25280848806e-05	0.638578					intronic	DZANK1							double zinc ribbon and ankyrin repeat domains 1	U-266/84	testis
chr20	19701943	19701943	A	C	rs2277866	N	2.43958797608e-10	0.882788					3-UTR	SLC24A3	NM_020689						solute carrier family 24 (sodium/potassium/calcium exchanger), member 3	HMC-1	uterus
chr20	21406018	21406018	G	T	rs804371	N	2.15539821511e-05	0.0734824					intergenic
chr20	23902884	23902884	A	G	rs1622461	N	1.49205146016e-08	0.947284					intergenic
chr20	23961469	23961469	A	G	rs6036595	N	4.7154702365e-10	0.973243					intergenic
chr20	25278464	25278470	AGTGGGG	AGTGGGGTGGGG		D	0.994507849216						3-UTR	PYGB	NM_002862						brain glycogen phosphorylase	PC-3	heart muscle
chr20	25457049	25457056	GCTCCCAC	GC		N	0.02799327299						exonic	NINL							ninein-like	Hep-G2	ovary
chr20	25743673	25743673	A	G	rs2258302	N	0.00052097189473						downstream	FAM182B								SCLC-21H	testis
chr20	2673644	2673657	GGGCGCTGGCGCTG	GGGCGCTG		N	0.486632794142						5-UTR	EBF4	NM_001110514							SH-SY5Y	prostate
chr20	29596958	29596958	A	T	rs62198952	N	7.83520226832e-06						intergenic
chr20	29596985	29596985	G	C	rs62198953	N	7.80075788498e-06						intergenic
chr20	29652566	29652569	CACA	CATG		N	1.86216057045e-05						intergenic
chr20	29652566	29652569	CACA	TACG		N	1.86216057045e-05						intergenic
chr20	29653139	29653142	TATC	CATA		N	0.0566310994327						intergenic
chr20	29653368	29653368	A	C	rs62206799	N	0.0189222600311						intergenic
chr20	29653447	29653447	G	T	rs6057425	N	6.01125236699e-07						intergenic
chr20	3063161	3063161	T	C	rs1887854	N	2.18590639633e-06	0.923323					downstream	AVP						DIABETES INSIPIDUS, NEUROHYPOPHYSEAL	arginine vasopressin	HEK-293	kidney
chr20	31407661	31407661	A	T	rs404543	N	0.486632794142	0.810304					upstream	MAPRE1							microtubule-associated protein, RP/EB family, member 1	HEL	bone marrow
chr20	31446645	31446645	A	G	rs853853	N	9.25131189433e-08	0.809704					intergenic
chr20	34330259	34330259	T	C	rs2425124	N	0.486632794142	1					upstream	RBM39							RNA binding motif protein 39	HEL	bone marrow
chr20	3450811	3450811	G	A	rs1552323	N	3.5912853491e-06	0.803115					upstream	ATRN							attractin	HaCaT	duodenum
chr20	36247345	36247345	A	G	rs2144505	N	1.41750746252e-07	0.802716					downstream	LINC00489
chr20	36247400	36247400	A	C	rs2144506	N	2.38598499891e-06	0.564497					downstream	LINC00489
chr20	37229583	37229583	C	T	rs6128504	N	2.46350995159e-10	0.908746					upstream	ARHGAP40							Rho GTPase activating protein 40	SK-BR-3	skin
chr20	37547374	37547374	G	A	rs4812336	N	5.51370249013e-06	0.332468					3-UTR	PPP1R16B	NM_001172735 NM_015568						protein phosphatase 1, regulatory (inhibitor) subunit 16B	U-266/70	lymph node
chr20	37555116	37555116	G	C	rs3752290	N	2.46191248152e-05	0.401358	N	N	N	N	nonsynonymous SNV	FAM83D	NM_030919	1	31	11	V=>L		family with sequence similarity 83, member D	SiHa	esophagus
chr20	3758426	3758426	C	G	rs910654	N	0.259644180536	0.296126					3-UTR	SPEF1	NM_015417						sperm flagellar 1	A-549	testis
chr20	4050164	4050164	C	T	rs1538070	N	2.66173916241e-10	0.934904					intergenic
chr20	41818989	41818989	G	A	rs6065588	N	8.67415201355e-06	0.758187					upstream	PTPRT							protein tyrosine phosphatase, receptor type, T	SCLC-21H	cerebral cortex
chr20	45523307	45523308	CG	GC		N	0.0390579923987						5-UTR	EYA2	NM_005244 NM_172110						eyes absent 2 homolog (Drosophila)	U-266/84	esophagus
chr20	55743266	55743266	A	G	rs6070005	N	4.83209555268e-13	0.889776					downstream	BMP7							bone morphogenetic protein 7	MCF-7	thyroid gland
chr20	56940153	56940153	A	C	rs6026220	N	1.15117359201e-06	0.590855					3-UTR	RAB22A	NM_020673						RAB22A, member RAS oncogene family	SK-BR-3	cerebral cortex
chr20	57090419	57090419	G	C	rs910863	N	0.00116270338185	0.963858					upstream	APCDD1L APCDD1L-AS1
chr20	57475191	57475191	A	G	rs13831	N	0.00227849651128	0.797324					3-UTR	GNAS	NM_001309883 NM_001309842					PSEUDOPSEUDOHYPOPARATHYROIDISM	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	MCF-7	thyroid gland
chr20	5910766	5910766	A	C	rs410462	N	1.46123241507e-07	0.564497					intergenic
chr20	592038	592038	C	T	rs282165	N	3.7827931898e-09	0.852436					intergenic
chr20	60292863	60292863	C	T	rs8121433	N	0.000112499721581	0.29992					intronic	CDH4							cadherin 4	U-251-MG	spleen
chr20	61273717	61273717	G	C	rs6122141	N	0.0155187714845	0.515575					upstream	SLCO4A1							solute carrier organic anion transporter family, member 4a1	PC-3	esophagus
chr20	61406995	61406995	A	G	rs856951	N	9.25893814951e-08	0.986022					ncRNA	LINC00659
chr20	61407076	61407076	T	C	rs856952	N	0.00289550842717	0.358227					ncRNA	LINC00659
chr20	61460338	61460338	C	T	rs6062700	N	1.20357196431e-10	0.629393					intronic	COL9A3							collagen, type IX, alpha 3	BEWO	thyroid gland
chr20	61812932	61812932	T	C	rs2064612	N	6.53440039855e-08	0.679712					intergenic
chr20	6193716	6193716	T	G	rs2257221	N	8.7800494414e-14	0.98742					intergenic
chr20	61965096	61965099	CAGA	CA		N	0.102632343769						intergenic
chr20	62130469	62130469	C	T	rs140890899	N	0.0468259081244	0.108427					5-UTR	EEF1A2	NM_001958						eukaryotic translation elongation factor 1 alpha 2	MCF-7	heart muscle
chr20	62133073	62133073	G	A	rs880445	N	1.10158956609e-11	0.513578					intergenic
chr20	62272583	62272583	G	T	rs3865523	N	1.09631027954e-05	0.669928					3-UTR	STMN3	NM_001276310 NM_015894							SCLC-21H	cerebral cortex
chr20	62309554	62309554	C	T	rs41309367	N	1.55486293352e-06	0.611621					ncRNA	RTEL1-TNFRSF6B
chr20	62321655	62321655	G	A	rs2236506	N	5.19864588568e-05	0.696086					synonymous SNV	RTEL1	NM_001283010 NM_001283009 NM_016434 NM_032957	25,26,26,26	1605,535,2274,758,2274,758,2346,782	535,758,758,782	A=>A,A=>A,A=>A,A=>A		regulator of telomere elongation helicase 1	HeLa	testis
chr20	62602062	62602062	T	G	rs79903344	N	0.000240043184021	0.281949					upstream	ZNF512B							zinc finger protein 512B	MOLT-4	skin
chr20	8000386	8000386	A	G	rs2205783	N	0.486632794142	0.740016					5-UTR	TMX4	NM_021156							U-266/70	testis
chr21	10905865	10905865	G	A	rs28454907	N	2.67148607236e-05						downstream	TPTE							transmembrane phosphatase with tensin homology
chr21	10991620	10991620	T	C	rs469689	N	3.73761688266e-09	0.850839					upstream	TPTE							transmembrane phosphatase with tensin homology
chr21	11169243	11169243	A	C	rs209066	N	0.000114213398774						intergenic
chr21	14410455	14410455	G	A	rs66558909	N	0.00580931128934						upstream	ANKRD30BP2
chr21	15358406	15358406	A	G	rs1297059	N	2.14735146331e-10	0.960264					intergenic
chr21	20229961	20229961	T	G	rs4239823	N	1.82716188846e-08	0.846845					intergenic
chr21	26890795	26890795	T	C	rs6516676	N	8.99879942697e-13	0.82508					intergenic
chr21	27839192	27839192	G	A	rs219638	N	0.000325340894051	0.185503					ncRNA	CYYR1-AS1
chr21	27839197	27839197	A	G	rs75654436	N	0.00223690853454	0.0587061					ncRNA	CYYR1-AS1
chr21	28207520	28207522	GCA	GCCA		N	0.337173938751						intergenic
chr21	30247342	30247342	A	C	rs2103488	N	6.1340625912e-09	0.870607					intergenic
chr21	31863847	31863847	G	C	rs2251071	N	6.41942676793e-08	0.554313					3-UTR	KRTAP19-3	NM_181609							A-431	adipose tissue
chr21	31933337	31933337	A	G	rs373438605	N	0.000122288111015	0.00259585					downstream	KRTAP19-7								A-431	adipose tissue
chr21	37528856	37528857	CC	TA		N	0.00875811651349						upstream	CBR3-AS1 DOPEY2
chr21	45138118	45138118	T	G	rs1107204	N	1.7771253219e-11	0.639177					upstream	PDXK							pyridoxal (pyridoxine, vitamin B6) kinase	CACO-2	testis
chr21	45587031	45587031	A	G	rs8131733	N	7.21962081229e-08	0.891374					intergenic
chr21	45620265	45620265	G	T	rs55893906	N	0.000686165236402	0.214856					intergenic
chr21	45769839	45769849	TAAAAGGAGAC	TAAAGGAGAC		N	0.481169074774						intergenic
chr21	45882123	45882123	C	T	rs2236676	N	4.07159632232e-06	0.614417					intergenic
chr21	46397346	46397348	TGT	TGTTGTCTGCACCCCGT		N	0.144074007869						downstream	FAM207A								HEL	spleen
chr21	47742894	47742898	AGGAC	AGGGAC		N	0.00597746809945						5-UTR	C21orf58	NM_001286476 NM_058180							REH	bone marrow
chr22	17008139	17008139	T	C	rs71326254	N	1.0395661775e-05	0.641174					intergenic
chr22	18027817	18027837	CTTTTTTTTTTTTTTTTGCAG	CTTTTTTTTTTTTTTTGCAG		N	0.0057473545894						intronic	CECR2							cat eye syndrome chromosome region, candidate 2	NTERA-2	testis
chr22	18882058	18882058	T	G	rs73378826	D	1.0						upstream	LOC100996432
chr22	20657835	20657837	GGC	GCGC		D	1.0						ncRNA	LOC101927859
chr22	20795454	20795454	T	C	rs62219032	N	0.000327660498442	0.135783					downstream	KLHL22							kelch-like 22 (Drosophila)	AN3-CA	ovary
chr22	23853983	23853983	C	T	rs6003759	N	4.28012072007e-07	0.674121					intergenic
chr22	23854125	23854125	G	C	rs915580	N	7.28138189743e-08	0.701677					intergenic
chr22	24248712	24248712	T	C	rs5760101	N	1.48946170953e-07	0.71885					intergenic
chr22	25679231	25679231	G	A	rs62233674	N	4.94552976452e-15	0.840256					intergenic
chr22	25746647	25746647	C	T	rs133185	N	0.000211570833926	0.397364					downstream	LRP5L								U-2-OS	bone marrow
chr22	29784786	29784786	G	C	rs5752906	N	0.010520326905	0.489018					upstream	AP1B1							adaptor protein complex AP-1, beta 1 subunit	RT-4	lymph node
chr22	30723272	30723272	C	T	rs4820833	N	0.0239333175123	0.999601					upstream	TBC1D10A							TBC1 domain family, member 10a	MOLT-4	esophagus
chr22	32438941	32438941	T	C	rs2899172	N	8.1491791093e-08	1					upstream	SLC5A1							solute carrier family 5 (sodium/glucose cotransporter), member 1	CACO-2	duodenum
chr22	35795125	35795125	G	C	rs5999821	N	9.85482451199e-09	0.508986					upstream	MCM5							minichromosome maintenance deficient 5, cell division cycle 46 (S. cerevisiae)	REH	bone marrow
chr22	37576356	37576361	TCCTCG	TCCCTCG		N	0.0220800321549						3-UTR	C1QTNF6	NM_031910 NM_182486						C1q and tumor necrosis factor related protein 6	MCF-7	uterus
chr22	37824313	37824313	G	C	rs133714	N	5.61461047255e-06	0.491613					upstream	ELFN2							leucine rich repeat and fibronectin type III, extracellular 2	U-2-OS	cerebral cortex
chr22	37964408	37964430	CCAGCGCCTGCTGCAAACCCCTC	CC		N	0.0117741031572						nonframeshift substitution	CDC42EP1	NM_152243	3	757					U-138-MG	stomach
chr22	38043444	38043444	C	A	rs3213528	N	1.36865228342e-05	0.355631					ncRNA	LOC101927051
chr22	38092892	38092892	G	A	rs1004890	N	0.167474642396	0.170927					upstream	TRIOBP							TRIO and F-actin binding protein	TIME	spleen
chr22	38120041	38120041	G	A	rs4821700	N	0.486632794142		N	N	N	N	nonsynonymous SNV	TRIOBP	NM_001039141	7	1478	493	S=>N		TRIO and F-actin binding protein	TIME	spleen
chr22	38130459	38130459	G	T	rs8140207	N	2.89615542215e-07	0.263978	N	N	N	N	nonsynonymous SNV	TRIOBP	NM_001039141	9	4116	1372	E=>D		TRIO and F-actin binding protein	TIME	spleen
chr22	38712782	38712782	G	C	rs135766	N	0.0228732638061	0.995407					intronic	CSNK1E LOC400927-CSNK1E
chr22	38819296	38819296	T	C	rs138404	N	1.70973113445e-09	1					intergenic
chr22	39496322	39496331	TAACAACAAG	TAACAAG		N	0.0236556269228						nonframeshift substitution	APOBEC3H	NM_001166002 NM_001166004 NM_181773 NM_001166003	2,2,2,2	39,39,39,39					Karpas-707	lymph node
chr22	39497452	39497454	AAG	GAC		N	0.0784068256617						nonframeshift substitution	APOBEC3H	NM_001166002 NM_001166004 NM_181773 NM_001166003	3,3,3,3	361,361,361,361					Karpas-707	lymph node
chr22	39499763	39499763	T	C	rs139316	N	1.84741233422e-09	0.50619					3-UTR	APOBEC3H	NM_001166002 NM_001166003 NM_181773							Karpas-707	lymph node
chr22	39636899	39636920	GTCTCTCTCTCTCTCTCTCTCA	GTCTCTCTCTCTCTCTCTCTCTCTCA		D	0.979315936565						5-UTR	PDGFB	NM_033016						platelet derived growth factor, B polypeptide	EFO-21	placenta
chr22	39644273	39644273	G	A	rs130651	N	8.23158075036e-09	0.790735					intergenic
chr22	39834102	39834102	C	G	rs73167342	N	5.81411086387e-07	0.725639					downstream	LOC100506472 TAB1
chr22	40161181	40161219	TTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGGC	TTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGGC		N	8.7708918727e-05						intronic	ENTHD1							ENTH domain containing 1	SK-MEL-30	testis
chr22	40417820	40417820	A	G	rs5995794	N	6.30136401014e-06	0.271166	D	N	N	N	nonsynonymous SNV	FAM83F	NM_138435	4	1306	436	R=>G			SCLC-21H	testis
chr22	40436973	40436973	G	C	rs11704416	N	0.000109819797217	0.201278					intergenic
chr22	41215420	41215435	GGGGGGGGGGCGGCTA	GGTGGGGGGGGGCGGCTA		N	0.486632794142						upstream	SLC25A17							solute carrier family 25 (mitochondrial carrier, peroxisomal membrane protein), member 17	K-562	ovary
chr22	41470522	41470522	G	A	rs8136923	N	8.27876192488e-06	0.250799					upstream	SNORD140
chr22	41574969	41574976	TGTAGTAT	TGTAT		D	0.999915480614						3-UTR	EP300	NM_001429					COLORECTAL CANCER, SOMATIC	E1A binding protein p300	HL-60	bone marrow
chr22	41637119	41637119	G	T	rs4820434	N	0.0878771468997	0.219249					upstream	CHADL								BEWO	cerebral cortex
chr22	41923644	41923644	G	A	rs17367849	N	0.00193340517581	0.193091					3-UTR	POLR3H	NM_001018050 NM_001018052 NM_001282885 NM_138338 NM_001282884						polymerase (RNA) III (DNA directed) polypeptide H	HEK-293	cerebral cortex
chr22	41985956	41985958	GGC	TGA		N	0.486632794142						upstream	PMM1							phosphomannomutase 1	U-87-MG	ovary
chr22	42177453	42177453	G	C	rs4822050	N	0.000481797556859	0.380192					intronic	MEI1							meiosis defective 1	U-266/70	appendix
chr22	42195410	42195410	T	C	rs139561	N	9.91520646494e-05	0.159145					3-UTR	MEI1	NM_152513						meiosis defective 1	U-266/70	appendix
chr22	42317581	42317606	CAAAAAAAAAAACAAAACAAAAAGGT	CAAAAAAAAAAAACAAAACAAAAAGGT		N	0.0382126159966						intergenic
chr22	42523943	42523943	A	G	rs16947	N	4.38415348469e-08	0.640775					nonsynonymous SNV	CYP2D6	NM_000106 NM_001025161	6,5	886,733	296,245	C=>R,C=>R	DEBRISOQUINE, POOR METABOLISM OF		U-266/70	liver
chr22	42537404	42537404	G	C	rs2854741	N	1.64172689665e-07	0.827676					ncRNA	CYP2D7
chr22	42538029	42538029	A	G	rs1058167	N	2.87545617539e-06	0.553315					ncRNA	CYP2D7
chr22	42540551	42540551	A	G	rs2743461	N	0.000193789004697	0.375599					ncRNA	CYP2D7
chr22	42680201	42680201	T	C	rs76462269	N	0.0118177924305	0.107827					upstream	TCF20							transcription factor 20	Daudi	thyroid gland
chr22	43182073	43182077	CAACG	CACG		N	0.0109078660607						intergenic
chr22	43562306	43562306	A	G	rs138926	N	3.79426296604e-06	0.592252					downstream	TTLL12							tubulin tyrosine ligase-like family, member 12	K-562	esophagus
chr22	44760501	44760501	C	T	rs5765777	N	8.43639868793e-14	0.108826					intergenic
chr22	44761797	44761797	T	A	rs5765809	N	2.19771868615e-06	0.370807					intergenic
chr22	45258495	45258495	A	G	rs8777	N	1.88765980624e-07	0.559505					3-UTR	ARHGAP8	NM_001017526 NM_001198726 NM_181335 NM_181334						Rho GTPase activating protein 8	BEWO	salivary gland
chr22	45560184	45560184	A	G	rs564607	N	0.00705494079739	1					intronic	NUP50							nucleoporin 50	HL-60	bone marrow
chr22	45680241	45680241	A	G	rs2742627	N	1.48129597477e-08	1					upstream	UPK3A							uroplakin 3A	RT-4	prostate
chr22	45680387	45680387	G	A	rs2742629	N	0.0401754491031	0.40615					upstream	UPK3A							uroplakin 3A	RT-4	prostate
chr22	45680824	45680824	A	G	rs2255432	N	1.66050704138e-05	0.777955					upstream	UPK3A							uroplakin 3A	RT-4	prostate
chr22	46368130	46368130	T	C	rs62226057	N	8.54360635572e-08	0.778554					intronic	WNT7B							wingless-related MMTV integration site 7B	A-549	skin
chr22	46449891	46449891	G	A	rs12159707	N	0.313342124224	0.215455		D	D	N	nonsynonymous SNV	PRR34	NM_018280	1	83	28	P=>L
chr22	50050847	50050847	G	A	rs9616333	N	0.192809551954	0.442292					5-UTR	C22orf34	NM_001289922							MOLT-4	spleen
chr22	50051786	50051786	T	C	rs5770623	N	1.09152530764e-11	1					upstream	C22orf34								MOLT-4	spleen
chr22	50221994	50221994	C	G	rs6009885	N	0.0009906248888						upstream	BRD1							bromodomain containing 1	REH	testis
chr22	50432604	50432604	C	A	rs137841	N	2.47974003287e-06	0.23722					downstream	IL17REL								SK-BR-3	stomach
chr22	50451687	50451687	T	C	rs137873	N	6.12132998867e-06	0.604832					upstream	IL17REL								SK-BR-3	stomach
chr22	50451771	50451771	C	T	rs713669	N	6.10924053035e-06	0.593051					upstream	IL17REL								SK-BR-3	stomach
chr22	50468933	50468933	G	T	rs79298	N	0.486632794142	0.339257	N	N	N	N	intergenic
chr22	50600619	50600619	C	T	rs730341	N	4.52054564448e-06	0.466853					downstream	MOV10L1							Moloney leukemia virus 10-like 1	TIME	testis
chr22	50646859	50646882	CAAAAAAAAAAAAAAAATAGCCAC	CAAAAAAAAAAAAAAATAGCCAC		D	0.979821324348						intronic	SELO
chr22	50646936	50646936	G	C	rs5771102	N	1.91916797121e-07	0.701877					intronic	SELO
chr22	50678571	50678571	T	C	rs5771109	N	2.18044715439e-05	0.384185					intronic	TUBGCP6							tubulin, gamma complex associated protein 6	HeLa	spleen
chr22	50747101	50747101	T	C	rs62241218	N	0.163379892707	0.569289					intergenic
chr22	51183255	51183255	A	G	rs5771002	N	6.7821798666e-07	0.725839	N	N	N	D	nonsynonymous SNV	ACR	NM_001097	5	886	296	M=>V		acrosin prepropeptide	NTERA-2	testis
chr3	10868944	10868944	A	G	rs11128528	N	6.50064757792e-05	0.489617					3-UTR	SLC6A11	NM_001317406						solute carrier family 6 (neurotransmitter transporter, GABA), member 11	Hep-G2	cerebral cortex
chr3	108754320	108754335	TAAAAAAAAAAGCAGG	TAAAAAAAAAAAAGCAGG		N	0.0295711159706						intronic	MORC1							microrchidia 1	RPMI-8226	testis
chr3	112253193	112253212	CAAAAAAAAAAAAAATTGTT	CAAAAAAAAAAAAATTGTT		N	0.486632794142						intronic	ATG3							autophagy related 3	U-698	testis
chr3	112280706	112280706	C	G	rs2399431	N	0.486632794142	0.974441					5-UTR	ATG3	NM_001278712 NM_022488						autophagy related 3	U-698	testis
chr3	11313910	11313910	G	A	rs2594971	N	0.216774374247	0.504992					upstream	ATG7								BEWO	lymph node
chr3	11518755	11518755	T	C	rs4684782	N	1.78885954938e-07	0.491214					intronic	ATG7								BEWO	lymph node
chr3	11942797	11942797	T	C	rs407006	N	9.79034240345e-08	0.326478					intergenic
chr3	121265043	121265043	C	T	rs13065220	N	0.486632794142	0.744409					upstream	POLQ							polymerase (DNA directed), theta	U-698	bone marrow
chr3	122130751	122130751	T	C	rs11553085	N	0.0141487475485	0.503195					3-UTR	WDR5B	NM_019069						WD repeat domain 5B	SK-MEL-30	thyroid gland
chr3	122474284	122474309	TAAAAAAAAAAAAAAAAGATACAAGT	TAAAAAAAAAAAAAAAAAGATAAAAGT		N	0.000857625622302						intronic	HSPBAP1							Hspb associated protein 1	SK-MEL-30	spleen
chr3	128792751	128792751	G	A	rs4927903	N	5.24371995478e-13	0.90016					intergenic
chr3	129045278	129045278	T	C	rs6801264	N	5.12874098746e-09	0.857827					intergenic
chr3	129800155	129800155	T	C	rs79340532	N	0.000141702766996						upstream	ALG1L2
chr3	129800163	129800163	C	G	rs79213870	N	0.000133009205456						upstream	ALG1L2
chr3	133307491	133307491	T	C	rs6792846	N	2.27956279559e-05	0.921925					3-UTR	CDV3	NM_001134422 NM_001282762 NM_017548 NM_001134423 NM_001282763 NM_001282764 NM_001282765						carnitine deficiency-associated gene expressed in ventricle 3	U-698	lymph node
chr3	134370556	134370556	G	T	rs6439506	N	0.486632794142	0.896965					upstream	KY							kyphoscoliosis peptidase	U-87-MG	skin
chr3	13679688	13679688	T	A	rs1061390	N	0.00020534201758	0.2498					3-UTR	FBLN2	NM_001004019 NM_001998 NM_001165035						fibulin 2	HMC-1	adipose tissue
chr3	138091701	138091701	G	T	rs1199333	N	3.58105474163e-08	0.884185					intronic	MRAS							muscle and microspikes RAS	EFO-21	adipose tissue
chr3	13921823	13921823	C	T	rs34268746	N	2.610747174e-08	0.544129					upstream	WNT7A							wingless-related MMTV integration site 7A	EFO-21	cerebral cortex
chr3	14526667	14526686	CGTGTGTGTGTGTGTGTGTA	CGTGTGTGTGTGTGTGTGTGTGTA		D	0.95810842514						3-UTR	SLC6A6	NM_001134367 NM_003043						solute carrier family 6 (neurotransmitter transporter, taurine), member 6	WM-115	ovary
chr3	14531627	14531631	GCCTG	CCCTC		N	0.000332064722897						3-UTR	GRIP2	NM_001080423						glutamate receptor interacting protein 2
chr3	151171439	151171439	A	C	rs7619322	N	2.96118651022e-06	0.727835	N	P	P	N	nonsynonymous SNV	IGSF10	NM_178822	3	448	150	Y=>D		immunoglobulin superfamily, member 10	RPMI-8226	gallbladder
chr3	151217309	151217309	G	T	rs7615314	N	2.1449291232e-09	0.838059					intergenic
chr3	15563391	15563391	A	T	rs4684250	N	2.17593656851e-13	1					upstream	COLQ						ENDPLATE ACETYLCHOLINESTERASE DEFICIENCY	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	BEWO	heart muscle
chr3	158366900	158366900	G	A	rs2303909	N	7.1193576332e-06	0.583267	N	N	N	N	nonsynonymous SNV	GFM1	NM_001308164 NM_001308166 NM_024996	5,5,5	643,643,643	215,215,215	V=>I,V=>I,V=>I		G elongation factor, mitochondrial 1	RPMI-8226	kidney
chr3	158390395	158390395	A	T	rs9841	N	0.486632794142	0.409145					5-UTR	LXN	NM_020169							MCF-7	ovary
chr3	158409262	158409262	C	T	rs1047355	N	3.77542505703e-06	0.409145					3-UTR	GFM1	NM_001308164 NM_024996						G elongation factor, mitochondrial 1	RPMI-8226	kidney
chr3	158422506	158422506	G	A	rs4680457	N	6.02349746259e-06	0.583267					3-UTR	RARRES1	NM_002888						retinoic acid receptor responder (tazarotene induced) 1	CAPAN-2	appendix
chr3	158537443	158537443	A	G	rs3765083	N	0.0160784684122	0.559305	N	N	N	N	nonsynonymous SNV	MFSD1	NM_022736 NM_001167903 NM_001289406 NM_001289407	8,7,7,8	805,688,367,439	269,230,123,147	I=>V,I=>V,I=>V,I=>V		major facilitator superfamily domain containing 1	HL-60	esophagus
chr3	15901428	15901428	A	C	rs9883697	N	0.0507250502706	1					upstream	ANKRD28							ankyrin repeat domain 28	Karpas-707	bone marrow
chr3	15901446	15901446	T	G	rs11717575	N	0.0742136090994	1					upstream	ANKRD28							ankyrin repeat domain 28	Karpas-707	bone marrow
chr3	160955879	160955903	GGGCTTTTTTTTTTTTTTTAAGATG	TGGCTTTTTTTTTTTTTAAGATG		D	0.839239954948						exonic	NMD3							NMD3 homolog (S. cerevisiae)	MCF-7	urinary bladder
chr3	161091089	161091089	G	C	rs460508	N	0.000297317135846	0.792732					upstream	SPTSSB							serine palmitoyltransferase, small subunit B	MCF-7	stomach
chr3	163720950	163720950	A	G	rs9814800	N	6.87971422053e-08	0.616813					intergenic
chr3	163889384	163889384	T	C	rs10936412	N	1.98009752239e-06	0.552716					upstream	MIR1263
chr3	16450872	16450872	T	C	rs1546650	N	1.72283819211e-06	0.63099					intronic	RFTN1							raftlin lipid raft linker 1	HDLM-2	lymph node
chr3	167000256	167000256	G	C	rs12638625	N	0.000328706781147		N	N	N	N	nonsynonymous SNV	ZBBX	NM_001199202 NM_001199201 NM_024687	19,20,19	1820,607,2024,675,1907,636	607,675,636	A=>G,A=>G,A=>G		zinc finger, B-box domain containing	CAPAN-2	testis
chr3	168538993	168538993	A	G	rs603638	N	1.65983518596e-10	0.853235					ncRNA	EGFEM1P
chr3	168546914	168546914	C	T	rs678690	N	1.11332285613e-08	0.521565					ncRNA	EGFEM1P
chr3	16926491	16926491	G	A	rs6442654	N	0.00209794519469						5-UTR	PLCL2	NM_001144382						phospholipase C-like 2	Daudi	ovary
chr3	16926521	16926523	CTG	CG		N	0.0994581654668						5-UTR	PLCL2	NM_001144382						phospholipase C-like 2	Daudi	ovary
chr3	16926524	16926526	CTG	CG		N	0.0868147090077						5-UTR	PLCL2	NM_001144382						phospholipase C-like 2	Daudi	ovary
chr3	16926549	16926549	T	G		N	0.0154966115952						intronic	PLCL2(NM_001144382:exon2:c.13+1T>G)
chr3	16926561	16926563	CTG	CG		N	0.0716609060764						exonic	PLCL2							phospholipase C-like 2	Daudi	ovary
chr3	16926567	16926567	T	C	rs373958057	N	1.04537343759e-06	1					exonic	PLCL2							phospholipase C-like 2	Daudi	ovary
chr3	16974610	16974610	C	A	rs9880307	N	1.01050915191e-07	0.483826					5-UTR	PLCL2	NM_015184						phospholipase C-like 2	Daudi	ovary
chr3	170078232	170078232	C	T	rs3772173	N	0.000139434094308	0.690296	N	N	N	N	nonsynonymous SNV	SKIL	NM_001248008 NM_001145097 NM_005414 NM_001145098	1,1,2,3	113,113,113,53	38,38,38,18	A=>V,A=>V,A=>V,A=>V		SKI-like	EFO-21	gallbladder
chr3	172118995	172118995	C	A	rs1285080	N	3.71383421793e-08	0.899561					downstream	FNDC3B							fibronectin type III domain containing 3B	EFO-21	thyroid gland
chr3	172549081	172549092	GAAAAAAATCAG	GAAAAAATCAG		N	0.00900333467871						intergenic
chr3	1771749	1771749	A	C	rs6442664	N	1.06031620817e-07	0.726438					intergenic
chr3	178984772	178984784	TTCTCTCTCTTTG	TTCTCTCTCTCTTTG		N	3.12624615617e-06						5-UTR	KCNMB3	NM_001163677 NM_171828							THP-1	placenta
chr3	18055231	18055231	A	C	rs61978649	N	2.86614204015e-06	0.457468					nonsynonymous SNV	LOC339862	NM_001257177	2	94	32	S=>R
chr3	18486173	18486173	G	A	rs62240975	N	0.0035871558357	0.335863					5-UTR	SATB1	NM_001322871 NM_001322873 NM_001322876 NM_001322872						special AT-rich sequence binding protein 1	HDLM-2	cerebral cortex
chr3	186304313	186304313	G	T	rs7630822	N	2.43992616333e-07	0.595447					downstream	DNAJB11							DnaJ (Hsp40) homolog, subfamily B, member 11	Karpas-707	liver
chr3	186427289	186427292	TTGC	CTGA		N	6.18863341515e-05						intergenic
chr3	186427289	186427292	TTGC	CTGC		N	6.18863341515e-05						intergenic
chr3	186545178	186545178	A	G	rs266770	N	0.224976569414	0.891374					intergenic
chr3	191692859	191692859	G	C	rs6444605	N	5.75777925338e-10	0.820487					intergenic
chr3	191692874	191692874	T	C	rs6444606	N	4.07236189215e-10	0.820887					intergenic
chr3	195270725	195270725	A	T	rs73196147	N	1.10170904009e-05	0.323482					upstream	PPP1R2								U-266/70	bone marrow
chr3	195370151	195370151	T	C	rs144800463	N	0.0626029074192	0.839058					intergenic
chr3	195512103	195512107	GGTGT	AGTGA		N	0.000986047554761						nonframeshift substitution	MUC4	NM_018406	2	6344				mucin 4	A-431	colon
chr3	195512103	195512107	GGTGT	GGTGA		N	0.000986047554761						nonframeshift substitution	MUC4	NM_018406	2	6344				mucin 4	A-431	colon
chr3	195723058	195723058	G	C	rs4927843	N	0.0273947417736						intergenic
chr3	20212189	20212189	A	G	rs1052930	N	4.3971678565e-07	0.821486					3-UTR	SGO1	NM_001012409 NM_001012411 NM_001012413 NM_001199251 NM_001199253 NM_001199255
chr3	23847211	23847211	C	A	rs3762767	N	0.0138430492952	0.322484					ncRNA	UBE2E1-AS1
chr3	23987842	23987842	A	G	rs9862416	N	0.486632794142	0.425919					intronic	NR1D2							nuclear receptor subfamily 1, group D, member 2	U-2-OS	thyroid gland
chr3	25639973	25639984	ATTTTTTTTCAA	ATTTTTTTTTCAA		D	0.944231152534						intronic	TOP2B							topoisomerase (DNA) II beta	REH	lymph node
chr3	25706277	25706277	A	C	rs10433573	N	0.0623748339713	0.374002					upstream,downstream	TOP2B;MIR4442
chr3	29529913	29529930	TTCTCTCTCTCTCTTTCA	TTCTCTCTCTCTTTCA		N	0.0693407654762						intronic	RBMS3							RNA binding motif, single stranded interacting protein	WM-115	thyroid gland
chr3	32207606	32207606	A	G	rs6799559	N	3.06904294121e-05	0.478834					3-UTR	GPD1L	NM_015141							BEWO	heart muscle
chr3	32635184	32635184	C	T	rs34426524	N	0.00368263898417	0.112021					intergenic
chr3	38350519	38350519	G	A	rs818818	N	1.48880559436e-07	0.825479	N	N	N	N	exonic	SLC22A14							solute carrier family 22 (organic cation transporter), member 14	AN3-CA	testis
chr3	39851030	39851030	G	C	rs71614181	N	8.67274284246e-05	0.703674					intronic	MYRIP							myosin VIIA and Rab interacting protein	SH-SY5Y	cerebral cortex
chr3	42750324	42750324	G	A	rs2240861	N	1.25307487906e-05	0.199081					3-UTR	CCDC13	NM_144719						coiled-coil domain containing 13	HMC-1	testis
chr3	4403817	4403818	TT	AC		N	0.00266050640494						3-UTR	SUMF1	NM_001164674 NM_001164675 NM_182760						sulfatase modifying factor 1	CAPAN-2	kidney
chr3	44283525	44283525	A	G	rs9850927	N	8.29844387651e-11	0.844249					5-UTR	TOPAZ1	NM_001145030							A-431	testis
chr3	44284584	44284584	G	A	rs9284879	N	3.04599097944e-06	0.563498	D	N	N	N	nonsynonymous SNV	TOPAZ1	NM_001145030	2	586	196	V=>I			A-431	testis
chr3	44612050	44612050	C	T	rs9873604	N	2.81477838371e-07	0.752196	N	N	N	N	nonsynonymous SNV	ZKSCAN7	NM_001288590 NM_001288592 NM_018651	6,5,6	1448,995,1448	483,332,483	T=>I,T=>I,T=>I			SH-SY5Y	ovary
chr3	44692564	44692564	C	G	rs2272044	N	1.21762525396e-07	0.315296	D	P	N	N	nonsynonymous SNV	ZNF35	NM_003420	2	5	2	T=>S			NTERA-2	testis
chr3	44775962	44775962	A	G	rs4682752	N	1.18061814192e-06	0.695288	D	N	N	N	nonsynonymous SNV	ZNF501	NM_001258280 NM_145044	3,3	49,49	17,17	M=>V,M=>V			NTERA-2	testis
chr3	44803108	44803123	AAAGACAGAAGACAGG	AAAGACAGG		N	0.486632794142						5-UTR	KIAA1143	NM_001320334 NM_020696							U-266/84	ovary
chr3	44826315	44826337	GTTTTTTTTTTCATTTTTTTAGG	GTTTTTTTTTTTCATTTTTTTAGG		D	0.980523943901						frameshift substitution	KIF15	NM_020242	6	362				kinesin family member 15	MOLT-4	testis
chr3	44854563	44854563	A	G	rs3762636	N	6.73015238135e-05	0.540935					intronic	KIF15							kinesin family member 15	MOLT-4	testis
chr3	44884647	44884647	C	A	rs3804583	N	4.76758472701e-08	0.527756	N	N	N	N	nonsynonymous SNV	KIF15	NM_020242	30	3616	1206	L=>M		kinesin family member 15	MOLT-4	testis
chr3	44929287	44929287	G	C	rs2271087	N	1.42893298971e-07	0.427117	D	P	P	D	nonsynonymous SNV	TGM4	NM_003241	3	300	100	E=>D		transglutaminase 4 (prostate)	BEWO	prostate
chr3	44930014	44930014	C	T	rs12632251	N	2.32974795011e-08	0.426518					intronic	TGM4							transglutaminase 4 (prostate)	BEWO	prostate
chr3	44943389	44943389	G	A	rs1995641	N	6.09608861168e-08	0.555112	N	P	N	N	nonsynonymous SNV	TGM4	NM_003241	8	937	313	E=>K		transglutaminase 4 (prostate)	BEWO	prostate
chr3	45715159	45715165	CTTTTAG	CTTTAG		N	0.365564525127						intronic	LIMD1							LIM domains containing 1	U-266/84	lung
chr3	46501284	46501286	CCT	CCTTCT		N	0.00804625824094						nonframeshift substitution	LTF	NM_002343	2	67				lactotransferrin	RPMI-8226	bone marrow
chr3	46717065	46717065	C	G	rs7635360	N	6.11978450138e-08	0.308307					intronic	ALS2CL							ALS2 C-terminal like	CAPAN-2	skin
chr3	47125385	47125385	G	A	rs4082155	N	1.99896488251e-10	0.469848	N	N	N	N	nonsynonymous SNV	SETD2	NM_014159	12	5885	1962	P=>L		SET domain containing 2	Daudi	bone marrow
chr3	47147393	47147427	CAAAAAAAAAAAAAAAAAAAAAATCAAATCAGTAT	CAAAAAAAAAAAAAAAAAAATCAAATCAGTAT		N	0.402186155319						intronic	SETD2							SET domain containing 2	Daudi	bone marrow
chr3	47161214	47161214	T	C	rs11923706	N	2.7186709417e-07	0.679313					intronic	SETD2							SET domain containing 2	Daudi	bone marrow
chr3	47282303	47282303	G	A	rs2276853	N	4.73133127343e-07	0.560104	D	D	P	N	nonsynonymous SNV	KIF9	NM_001134878 NM_182902 NM_022342	18,17,16	1912,1912,1717	638,638,573	R=>W,R=>W,R=>W		kinesin family member 9	PC-3	testis
chr3	47322496	47322496	C	T	rs807936	N	0.274132907391	0.488219					intronic	KIF9							kinesin family member 9	PC-3	testis
chr3	47459679	47459679	C	T	rs12487736	N	0.486632794142	0.452276	N	N	N	N	exonic	SCAP							SREBF chaperone	HEL	adrenal gland
chr3	47555142	47555142	C	A	rs2291298	N	0.486632794142	0.517772					5-UTR	ELP6	NM_001031703							HEL	adrenal gland
chr3	49040462	49040462	A	G	rs6772452	N	2.01562586066e-11	0.796725					intronic	P4HTM							prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum)	CAPAN-2	thyroid gland
chr3	49054692	49054692	T	C	rs3087866	N	0.000216675820411	0.904952	N	N	N	N	nonsynonymous SNV	DALRD3	NM_001276405 NM_001009996 NM_018114	5,5,5	896,896,395	299,299,132	Q=>R,Q=>R,Q=>R		DALR anticodon binding domain containing 3	U-266/70	testis
chr3	49298139	49298139	G	A	rs7626076	N	4.09788158962e-09	0.875					intergenic
chr3	49739507	49739507	G	C	rs1491985	N	1.58021616625e-11	0.848442					intronic	RNF123							ring finger protein 123	NB-4	bone marrow
chr3	49750188	49750188	T	A	rs3749240	N	3.81185127907e-09	0.597045					intronic	RNF123							ring finger protein 123	NB-4	bone marrow
chr3	49753003	49753003	T	G	rs34614773	N	3.63357030437e-05	0.584864					intronic	RNF123							ring finger protein 123	NB-4	bone marrow
chr3	50222926	50222926	T	A	rs1046956	N	7.89481049424e-08	0.765974	N	N	N	N	exonic	SEMA3F							sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	TIME	skin
chr3	50226151	50226151	T	C	rs14321	N	1.7486494891e-11	0.767173					3-UTR	SEMA3F	NM_001318798 NM_004186 NM_001318800						sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	TIME	skin
chr3	50594836	50594836	G	A	rs129310	N	9.60542820394e-07	0.711661					downstream	C3orf18								HDLM-2	heart muscle
chr3	50686062	50686062	G	A	rs1385025	N	2.16179341095e-09	0.720048					3-UTR	MAPKAPK3	NM_001243926 NM_001243925 NM_004635						mitogen-activated protein kinase-activated protein kinase 3	U-937	heart muscle
chr3	52852060	52852060	T	C	rs2245538	N	3.72562294615e-06	0.507788					intronic	ITIH4							inter alpha-trypsin inhibitor, heavy chain 4	U-266/70	liver
chr3	53258708	53258716	TGGGGGGCA	TGGGGGGGCA		N	2.49262598118e-07						downstream	TKT							transketolase	A-549	bone marrow
chr3	53910109	53910129	TGGGGGGGGAAAAGAAAAGGC	TGGGGGGGGGAAAAAAAAAGGC		D	0.81317025423						intronic	ACTR8							ARP8 actin-related protein 8	U-266/84	testis
chr3	53910109	53910129	TGGGGGGGGAAAAGAAAAGGC	TGGGGGGGGGAAAAAAAGGC		D	0.81317025423						intronic	ACTR8							ARP8 actin-related protein 8	U-266/84	testis
chr3	53915884	53915895	TCCCCCCACCAG	TCCCCACCAG		N	0.486632794142						intronic	ACTR8							ARP8 actin-related protein 8	U-266/84	testis
chr3	53926017	53926017	T	C	rs1992155	N	0.00591701222584	0.682508					upstream	SELK
chr3	61547274	61547274	G	A	rs73093079	N	0.486632794142	0.0595048					5-UTR	PTPRG	NM_002841						protein tyrosine phosphatase, receptor type, G	U-2197	adipose tissue
chr3	62355666	62355688	GTTTTTTTTTCTTTTAATTTTAG	GTTTTTTTTTTCTTTTAATTTTAG		N	0.15946213901						3-UTR	FEZF2	NM_018008						Fez family zinc finger 2	NTERA-2	cerebral cortex
chr3	69218696	69218696	T	C	rs12494541	N	6.27858165458e-09	0.847444					3-UTR	FRMD4B	NM_015123						FERM domain containing 4B	CACO-2	thyroid gland
chr3	73159985	73159991	AAAACGT	CAAAGGC		N	0.486632794142						intergenic
chr3	73160015	73160015	T	A	rs113413057	N	0.486632794142						intergenic
chr3	73160022	73160022	T	G	rs111744105	N	0.486632794142						intergenic
chr3	73160034	73160036	TGG	CGC		N	0.486632794142						intergenic
chr3	73160050	73160054	AAGGC	GAGGG		N	0.486632794142						intergenic
chr3	73160059	73160059	A	G	rs77103175	N	0.486632794142						intergenic
chr3	7732726	7732742	ATTTTTTTTTTTGGCTG	ATTTTTTTTTTGGCTG		N	0.0415328480303						intronic	GRM7							glutamate receptor, metabotropic 7	SH-SY5Y	cerebral cortex
chr3	8669361	8669361	C	A	rs1533001	N	2.19304226334e-07	0.460064					intronic	SSUH2								Hep-G2	testis
chr3	8671319	8671342	CTGACTCACCAGTGGTTCACAGAT	CTGACTCACCAGTGGTTCACAGATGACTCACCAGTGGTTCACAGAT		N	0.038804050535						intronic	SSUH2								Hep-G2	testis
chr3	9798773	9798773	C	G	rs1052133	N	9.25346171243e-07	0.302117	N	N	N	N	nonsynonymous SNV	OGG1	NM_002542 NM_016820	7,7	977,994	326,332	S=>C,P=>A			Daudi	kidney
chr3	98501760	98501762	TAC	TAAAAC		D	0.987064957619						5-UTR	ST3GAL6	NM_001323358 NM_001323359						ST3 beta-galactoside alpha-2,3-sialyltransferase 6	SK-MEL-30	heart muscle
chr3	98501764	98501767	CAGC	CC		D	0.996758162975						5-UTR	ST3GAL6	NM_001323358 NM_001323359						ST3 beta-galactoside alpha-2,3-sialyltransferase 6	SK-MEL-30	heart muscle
chr3	9932337	9932337	G	C	rs279558	N	0.486632794142	0.623203					5-UTR	JAGN1	NM_032492						jagunal homolog 1 (Drosophila)	BEWO	adrenal gland
chr4	1005384	1005391	CGGGGGTC	CGGGGTC		N	0.262174546719						upstream	FGFRL1							fibroblast growth factor receptor-like 1	PC-3	thyroid gland
chr4	10168712	10168712	G	T	rs6842858	N	3.15180628263e-08	0.972644					intergenic
chr4	10168737	10168737	C	G	rs6813634	N	3.32903411504e-08	0.971046					intergenic
chr4	1050653	1050653	G	A	rs3816474	N	1.44712380967e-10	0.835264					intergenic
chr4	10669522	10669522	A	C	rs13136927	N	2.0060551833e-05	0.411741					5-UTR	CLNK	NM_052964						cytokine-dependent hematopoietic cell linker	HDLM-2	kidney
chr4	1087168	1087171	AATG	AATATT		N	0.00693936832249						3-UTR	RNF212	NM_001193318						ring finger protein 212	HeLa	ovary
chr4	1087327	1087329	GAC	GCTGCCCAGGCTGGAGCCAGCCAT		N	0.000620116945356						nonframeshift substitution	RNF212	NM_001193318	4	720				ring finger protein 212	HeLa	ovary
chr4	1090625	1090625	G	A	rs4045481	N	1.80078973244e-06	0.546725					synonymous SNV	RNF212	NM_001193318 NM_001131034 NM_194439	3,3,3	174,58,174,58,174,58	58,58,58	T=>T,T=>T,T=>T		ring finger protein 212	HeLa	ovary
chr4	1164277	1164277	C	G	rs2279279	N	8.23881521228e-07	0.553315	N	N	N	N	nonsynonymous SNV	SPON2	NM_001128325 NM_001199021 NM_012445	6,7,5	724,724,724	242,242,242	V=>L,V=>L,V=>L		spondin 2, extracellular matrix protein	Karpas-707	prostate
chr4	1165130	1165130	G	T	rs11247975	N	0.00462894048542	0.554513	N	N	N	N	nonsynonymous SNV	SPON2	NM_001128325 NM_001199021 NM_012445	4,5,3	365,365,365	122,122,122	A=>E,A=>E,A=>E		spondin 2, extracellular matrix protein	Karpas-707	prostate
chr4	1222302	1222302	G	A	rs900020	N	4.64310756509e-10	0.627796					intronic	CTBP1							C-terminal binding protein 1	MOLT-4	spleen
chr4	1235643	1235643	A	G	rs2101094	N	4.89203785037e-06	0.840056					intronic	CTBP1							C-terminal binding protein 1	MOLT-4	spleen
chr4	1244416	1244416	A	G	rs1732115	N	8.08847238319e-13	0.819089					ncRNA	CTBP1-AS2
chr4	128415066	128415095	CAAAAAAAAAAAAAAAAACACAGTAAAGAC	CAAAAAAAAAAAAAAACACAGTAAAGAC		N	0.0134770087898						intergenic
chr4	128415066	128415095	CAAAAAAAAAAAAAAAAACACAGTAAAGAC	CAAAAAAAAAAAAAACACAGTAAAGAC		N	0.00644071958959						intergenic
chr4	1303682	1303682	G	T	rs13112706	N	0.0261177197099	0.238019					5-UTR	MAEA	NM_001297433						macrophage erythroblast attacher	SCLC-21H	spleen
chr4	1388790	1388790	T	C	rs79415192	N	0.0251526664943		N	N	N	N	nonsynonymous SNV	CRIPAK	NM_175918	1	491	164	V=>A			TIME	skin
chr4	1389005	1389006	TG	CA		N	0.479299396276						nonframeshift substitution	CRIPAK	NM_175918	1	706					TIME	skin
chr4	1389101	1389101	A	G	rs71614971	N	0.033961918205	0.19988	N	N	N	N	nonsynonymous SNV	CRIPAK	NM_175918	1	802	268	S=>G			TIME	skin
chr4	139100372	139100372	C	T	rs4479754	N	1.58008504059e-06	0.913538					intronic	SLC7A11(NM_014331:exon12:c.1442+1G>A)
chr4	139585573	139585573	C	T	rs6823417	N	3.29823890421e-10	0.617013					intergenic
chr4	144938047	144938047	C	T	rs12503691	N	0.00169994239695	0.319089					intronic	GYPB								HEL	bone marrow
chr4	1551794	1551794	G	T	rs73192390	N	1.06068137029e-05	0.804712					intergenic
chr4	1553257	1553257	T	C	rs73192392	N	4.56775453017e-08	0.760783					intergenic
chr4	15964863	15964863	G	T	rs4698433	N	0.418328940868	0.345647					upstream	FGFBP2								SK-MEL-30	bone marrow
chr4	160322728	160322730	CTC	CTTC		N	0.000317425554385						intergenic
chr4	1641578	1641578	A	G	rs6829285	N	0.00104728818405	0.274161					downstream	FAM53A							family with sequence similarity 53, member A	SCLC-21H	testis
chr4	165949047	165949047	A	G	rs4691144	N	0.000617920479272	0.998602					intergenic
chr4	165981768	165981782	GTTTTTTTTTAATGG	GTTTTTTTTTTAATGG		N	0.00328917056322						intergenic
chr4	183271186	183271201	GAAAAAAAAAAATGTT	GAAAAAAAAAAAAATGTT		N	0.0151469735429						intronic	TENM3							teneurin transmembrane protein 3	HDLM-2	placenta
chr4	185860274	185860274	A	C	rs6846090	N	3.5998187542e-08	0.877796					upstream	MIR4455
chr4	187065876	187065905	GCGGGGCCGGGGCCGGGGCCGGGGCCCGGA	GCGGGGCCGGGGCCGGGGCCCGGA		N	0.151240393519						upstream	FAM149A							family with sequence similarity 149, member A	SCLC-21H	kidney
chr4	187065924	187065924	A	G	rs2310392	N	7.96556851128e-05	0.888578					upstream	FAM149A							family with sequence similarity 149, member A	SCLC-21H	kidney
chr4	190580654	190580654	C	A	rs62325033	N	7.73592983023e-05						upstream	LINC01262
chr4	190582969	190582969	G	A	rs2148725	N	0.000493541709147						downstream	LINC01262
chr4	190582977	190582981	TGGAG	CGGAA		N	0.000371191999875						downstream	LINC01262
chr4	190583004	190583010	TGGTGTG	GGGCATT		N	7.43505665923e-08						downstream	LINC01262
chr4	190598318	190598318	G	T	rs5010097	N	0.000805710500572						upstream	LOC105379514
chr4	199208	199208	A	G	rs61794993	N	7.62341798577e-08	0.396166					intergenic
chr4	199286	199286	A	G	rs61794994	N	3.29684326061e-07	0.399361					intergenic
chr4	2010831	2010831	G	C	rs231189	N	0.486632794142	0.308906					5-UTR	NELFA	NM_005663							NB-4	testis
chr4	2287421	2287421	A	C	rs11737692	N	1.03191633016e-08	0.630591					intronic	ZFYVE28							zinc finger, FYVE domain containing 28	U-266/70	small intestine
chr4	2332319	2332319	C	G	rs3135115	N	1.77449365424e-07	0.203474					3-UTR	ZFYVE28	NM_001172657						zinc finger, FYVE domain containing 28	U-266/70	small intestine
chr4	247825	247825	G	A	rs10028482	N	2.40000841423e-09	0.291534					ncRNA	ZNF876P
chr4	25759109	25759132	CTTTTTTTTTTTTTAATATATTGC	CCTTTTTTTTTTTTAATATATTGC		N	0.0102034285665						intronic	SEL1L3							sel-1 suppressor of lin-12-like 3 (C. elegans)	Daudi	lymph node
chr4	264941	264941	A	G	rs11731285	D	0.999278843403	0.265575	N	N	N	N	nonsynonymous SNV	ZNF732	NM_001137608	3	1702	568	W=>R			NTERA-2	testis
chr4	26862546	26862572	CTTTTTTTTTTTTTTTTTTAAATAACC	CTTTTTTTTTTTTTTTTAAATAACC		N	0.39336180687						5-UTR	STIM2	NM_001169117 NM_001169118 NM_020860						stromal interaction molecule 2	REH	lymph node
chr4	299261	299261	G	A	rs79657896	N	0.162662908435	0.138978					intergenic
chr4	3076603	3076661	CCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC	CCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC		N	0.0251071602106						exonic	HTT							huntingtin	HMC-1	skin
chr4	3274214	3274214	T	C	rs6446726	N	2.2055512261e-07	0.565495					intergenic
chr4	3635811	3635811	C	T	rs1977175	N	1.70847613834e-09	0.993011					intergenic
chr4	368258	368258	T	C	rs3805233	N	0.00217058998533	0.13758					downstream	ZNF141								SCLC-21H	adrenal gland
chr4	3759538	3759538	T	G	rs3934515	N	2.83611115037e-07	0.985623					intergenic
chr4	3765190	3765190	C	T	rs56130178	N	2.32778529607e-05	0.215256					intergenic
chr4	37822203	37822205	GGT	GCGT		N	0.0310036502779						intergenic
chr4	37828175	37828175	T	C	rs2059484	N	0.486632794142	0.686502					upstream	PGM2							phosphoglucomutase 2	U-251-MG	esophagus
chr4	38387900	38387900	C	G	rs6812640	N	4.26505608608e-10	0.405152					intergenic
chr4	387579	387590	CTCTTTTCTTTA	CTCTTTA		N	0.001904511475						intergenic
chr4	39046586	39046588	CAG	CG		N	0.221345037222						5-UTR	KLHL5	NM_001007075 NM_001171654						kelch-like 5 (Drosophila)	U-138-MG	adipose tissue
chr4	39276623	39276625	AGT	AGGT		D	0.579039692879						intronic	WDR19							WD repeat domain 19	HeLa	thyroid gland
chr4	39368083	39368083	C	T	rs3736168	N	0.486632794142	0.414736					upstream	RFC1							replication factor C (activator 1) 1	MOLT-4	lymph node
chr4	41985101	41985101	A	G	rs2660332	N	5.32428884981e-07	0.661542					3-UTR	DCAF4L1	NM_001029955							REH	testis
chr4	4199634	4199634	A	T	rs2916414	N	2.22345164502e-07	0.66234	N	N	N	N	nonsynonymous SNV	OTOP1	NM_177998	5	927	309	D=>E		otopetrin 1	A-431	esophagus
chr4	420688	420688	C	T	rs2280250	N	6.12520310028e-08	0.389377					ncRNA	ABCA11P
chr4	42403561	42403561	T	C	rs55934419	N	0.0886866822839	0.327276					3-UTR	SHISA3	NM_001080505						shisa homolog 3 (Xenopus laevis)	AN3-CA	kidney
chr4	42659028	42659028	T	C	rs12503784	N	3.65528831026e-05	0.443291					5-UTR	ATP8A1	NM_001105529 NM_006095						ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	Daudi	thyroid gland
chr4	42659139	42659139	G	A	rs4629487	N	0.00393511354923	0.273363					upstream	ATP8A1							ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	Daudi	thyroid gland
chr4	46334702	46334702	A	G	rs279827	N	3.21460720443e-05	0.412939					intronic	GABRA2							gamma-aminobutyric acid (GABA) A receptor, subunit alpha 2	U-2-OS	cerebral cortex
chr4	49212012	49212016	ACTGA	TCTGT		D	0.999999284744						intergenic
chr4	49589986	49589987	TG	CA		D	0.999999761581						intergenic
chr4	57180576	57180581	CGGAGC	CGGAGCGGAGGGAGCGGAGGGAGC		N	9.38352684443e-09						nonframeshift substitution	KIAA1211	NM_020722	8	908					SH-SY5Y	testis
chr4	5803669	5803669	T	C	rs1031919	N	2.18017532916e-08	0.690495					intronic	EVC							Ellis van Creveld gene syndrome	U-87-MG	ovary
chr4	69910382	69910382	T	A	rs4694588	N	0.000302175467368	0.469449					intergenic
chr4	71570134	71570134	G	A	rs1891451	N	2.34794317322e-09	0.415535					upstream	RUFY3							RUN and FYVE domain containing 3	SCLC-21H	cerebral cortex
chr4	71570255	71570255	G	A	rs3753042	N	0.00209883297794	0.858427					upstream	RUFY3							RUN and FYVE domain containing 3	SCLC-21H	cerebral cortex
chr4	71767906	71767906	T	A	rs1871049	N	0.00147045135964	0.932907					upstream	MOB1B							MOB kinase activator 1B	HEL	kidney
chr4	72670632	72670653	GGGAGGAGGAGGAGGAGGAGGC	GGGAGGAGGAGGAGGAGGC		N	0.0769145786762						intronic	GC							group specific component	RH-30	liver
chr4	73672263	73672263	T	C	rs2622683	N	2.23147225142e-08	0.970048					intergenic
chr4	74410237	74410237	G	A	rs11728915	N	5.01283193444e-06	0.552915					intergenic
chr4	74464443	74464460	TAAAAAAAAATTAATTAC	TAAAAAAAATTAATTAC		D	0.623769879341						intronic	RASSF6							Ras association (RalGDS/AF-6) domain family member 6	Daudi	stomach
chr4	7655855	7655855	C	T	rs2285789	N	2.01534201724e-18	0.552316					intronic	SORCS2							sortilin-related VPS10 domain containing receptor 2	SiHa	cerebral cortex
chr4	7716061	7716061	C	T	rs16840892	N	1.67749976754e-06	0.109425	N	N	N	N	nonsynonymous SNV	SORCS2	NM_020777	16	2084	695	T=>M		sortilin-related VPS10 domain containing receptor 2	SiHa	cerebral cortex
chr4	78978412	78978412	T	C	rs28433362	N	0.018848977983	0.547724					upstream	FRAS1							Fraser syndrome 1 homolog (human)	SiHa	thyroid gland
chr4	7966812	7966812	G	A	rs4696709	N	0.259469091892	0.291733					downstream	ABLIM2							actin-binding LIM protein 2	U-2197	spleen
chr4	82136500	82136500	G	C	rs788862	N	0.00179398071487	0.289537					upstream	PRKG2							protein kinase, cGMP-dependent, type II	HEL	small intestine
chr4	84456142	84456142	G	C	rs7672304	N	0.0032444675453	0.409345					upstream	GPAT3
chr4	89378056	89378061	CGGGAC	CGGGGAC		N	0.486632794142						upstream	HERC5								SK-MEL-30	testis
chr4	9154426	9154426	C	T	rs144776921	N	0.486632794142	0.896765					intergenic
chr4	9154448	9154448	A	G	rs144519707	N	0.486632794142	0.896765					intergenic
chr4	9154535	9154535	T	C	rs34664951	N	0.00699609564617	0.910942					intergenic
chr4	942006	942006	G	A	rs2290403	N	0.486632794142	0.291933					5-UTR	TMEM175	NM_001297423 NM_001297427						transmembrane protein 175	Karpas-707	spleen
chr4	9470737	9470737	A	G	rs6852208	N	0.0103483898565						intergenic
chr4	954275	954277	TGT	CGC		N	0.00165271980222						3-UTR	DGKQ	NM_001347						diacylglycerol kinase, theta	NB-4	small intestine
chr4	9565776	9565776	A	G	rs13107224	N	2.35611409494e-07	0.994808					intergenic
chr4	9601365	9601365	C	T	rs1842489	N	8.94097411219e-07	0.848043					intergenic
chr4	9693525	9693525	T	G	rs6836657	N	0.0259339846671	0.996406					intergenic
chr5	102091073	102091073	T	C	rs447531	N	0.0212606247514	0.504393					intronic	PAM							peptidylglycine alpha-amidating monooxygenase	U-87-MG	heart muscle
chr5	102886512	102886512	T	C	rs58006145	N	0.128137916327	0.246406					3-UTR	NUDT12	NM_001300741 NM_031438							CAPAN-2	kidney
chr5	102890560	102890574	GAAAAAAAAAATCAG	GAAAAAAAAAAATCAG		N	0.273600041866						intronic	NUDT12								CAPAN-2	kidney
chr5	109220640	109220640	A	G	rs34709715	N	5.39237007615e-05						ncRNA	LOC100289673
chr5	111500816	111500822	CTAAAAT	CTAAAATAAAAT		D	0.999638319016						intronic	EPB41L4A								HeLa	gallbladder
chr5	111754851	111754851	C	G	rs3749742	N	0.0042657344602	0.279952					5-UTR	EPB41L4A	NM_022140							HeLa	gallbladder
chr5	115298232	115298232	G	C	rs9326980	N	2.63764232677e-10	0.774161					5-UTR	LVRN	NM_173800
chr5	115339086	115339086	A	G	rs6594929	N	1.42616878307e-08	0.811701					intronic	LVRN
chr5	115628120	115628143	CTTTTTTTTTTTTTGTCTTTGTAA	CTTTTTTTTTTTTGTCTTTGTAA		D	0.999148845673						intronic	COMMD10							COMM domain containing 10	U-937	thyroid gland
chr5	118690998	118690998	A	G	rs3813309	N	0.000875047815498	0.7502					5-UTR	TNFAIP8	NM_001286813						tumor necrosis factor, alpha-induced protein 8	Karpas-707	lymph node
chr5	120021817	120021819	CCG	ACA		N	0.0134699996561						nonframeshift substitution	PRR16	NM_016644 NM_001308087 NM_001308088 NM_001300783	3,2,4,2	259,118,118,328				proline rich 16	U-138-MG	heart muscle
chr5	120021817	120021819	CCG	CCA		N	0.0134699996561						nonframeshift substitution	PRR16	NM_016644 NM_001308087 NM_001308088 NM_001300783	3,2,4,2	259,118,118,328				proline rich 16	U-138-MG	heart muscle
chr5	122359502	122359536	AACACACACACACACACACACACACACACACCCCT	AACACACACACACACACACACACACACACACACCCCT		D	0.92841476202						3-UTR	PPIC	NM_000943						peptidylprolyl isomerase C	AN3-CA	urinary bladder
chr5	1295349	1295349	A	G	rs2853669	N	0.0123639889061	0.297923					upstream	TERT						PULMONARY FIBROSIS, TELOMERE-RELATED, 1	telomerase reverse transcriptase	TIME	lymph node
chr5	131811777	131811777	A	C	rs2706382	N	1.58132784211e-12	0.90655					downstream	C5orf56
chr5	133186929	133186929	A	C	rs4593321	N	4.62318017203e-10	0.964457					intergenic
chr5	138271303	138271303	T	C	rs7713581	N	3.34709018314e-12	0.95008					downstream	CTNNA1							catenin (cadherin associated protein), alpha 1	CACO-2	esophagus
chr5	141339522	141339522	A	G	rs252110	N	4.21264644501e-07	0.926318					upstream	PCDH12							protocadherin 12	Karpas-707	placenta
chr5	141693389	141693428	AGGGGGGGGGGGCGGAGGGAGGGAGGGAGAAGGAGGGGCT	AGGGGGGGGCGGAGGGAGGGAGGGAGAAGGAGGGGCT		D	0.660245060921						3-UTR	SPRY4	NM_001293289 NM_001293290 NM_001127496 NM_030964						sprouty homolog 4 (Drosophila)	WM-115	lung
chr5	150696301	150696335	CAAAAAAAAAAAAAAAAAAAAAAAGAGATCCATAT	CAAAAAAAAAAAAAAAAAAAAAAAAAGAGATCCATAT		N	0.000773167936131						3-UTR	SLC36A2	NM_181776						solute carrier family 36 (proton/amino acid symporter), member 2	HDLM-2	kidney
chr5	15385105	15385105	C	T	rs3849084	N	3.67100750839e-12	1					intergenic
chr5	169761621	169761645	CTTTTTTTTTTTCTTTTTAAATCTC	CTTTTTTTTTTTTCTTTTTAAATCTC		N	0.0085302516818						ncRNA	LINC01366
chr5	169762142	169762146	GAACT	GACC		N	0.00189291313291						downstream	LINC01366
chr5	170210090	170210090	A	G	rs7722089	N	1.27612365119e-09	0.725639					upstream	GABRP							gamma-aminobutyric acid (GABA) A receptor, pi	EFO-21	esophagus
chr5	171760544	171760546	TAA	TT		D	0.999584257603						3-UTR	SH3PXD2B	NM_001017995						SH3 and PX domains 2B	BEWO	gallbladder
chr5	172247400	172247400	A	C	rs793001	N	1.81986532201e-15	0.69369					intergenic
chr5	175731328	175731328	G	C	rs9763642	N	0.000699203228578	0.402356					intronic	SIMC1								K-562	ovary
chr5	176056806	176056806	C	T	rs6879864	N	1.07095754487e-09	0.926318					intronic	SNCB							synuclein, beta	SCLC-21H	cerebral cortex
chr5	176086083	176086083	T	C	rs4868679	N	0.134295240045	0.96845					downstream	TSPAN17								HDLM-2	bone marrow
chr5	176086089	176086089	G	C	rs4868680	N	0.122446738183	0.96845					downstream	TSPAN17								HDLM-2	bone marrow
chr5	176513460	176513460	A	G	rs641101	N	1.97019033976e-07	0.698283					upstream	FGFR4							fibroblast growth factor receptor 4	RH-30	lung
chr5	179072567	179072567	C	T	rs11959704	N	1.57774067588e-07	0.707468					upstream	C5orf60								SCLC-21H	testis
chr5	179514055	179514078	CTTTTTTTTTTTTTTTTTACACAG	CTTTTTTTTTTTTTTTTTTACACAG		N	0.000888057867996						intergenic
chr5	180076824	180076824	A	G	rs188655	N	1.08966514745e-06	0.961062					upstream	FLT4							FMS-like tyrosine kinase 4	HEK-293	spleen
chr5	19143227	19143235	CCGCGCGCA	CCGCGCA		N	0.0113812265918						intergenic
chr5	19143341	19143341	C	G	rs9292496	N	8.08984612632e-09	0.841054					intergenic
chr5	2787379	2787383	CTTCA	CTCA		N	0.020040018484						intergenic
chr5	37839633	37839633	T	C	rs2973033	N	1.57796712301e-05	0.405351					5-UTR	GDNF	NM_000514							WM-115	placenta
chr5	54529458	54529458	C	G	rs231623	N	0.133563384414	0.645767					5-UTR	CCNO	NM_021147						cyclin O	BEWO	testis
chr5	64781617	64781617	G	C	rs245537	N	1.40801026394e-09	0.611821					intergenic
chr5	6868116	6868144	ATGTGTGTGTGTGTGTGTGTGTGTGTGGC	ATGTGTGTGTGTGTGTGTGTGTGTGGC		N	0.00119325821288						intergenic
chr5	74400516	74400516	G	C	rs56174528	N	7.62652052799e-05	0.133586	D			N	nonsynonymous SNV	ANKRD31	NM_001164443	21	4697	1566	T=>R			AN3-CA	testis
chr5	74685520	74685520	A	G	rs3761743	N	4.18672925662e-07	0.388379					intronic	COL4A3BP							collagen, type IV, alpha 3 (Goodpasture antigen) binding protein	WM-115	thyroid gland
chr5	74921686	74921686	G	A	rs9332464	N	0.000397078925744	0.324681				N	nonsynonymous SNV	ANKDD1B	NM_001276713	5	506	169	S=>N		ankyrin repeat and death domain containing 1B	RPMI-8226	colon
chr5	75008193	75008193	T	C	rs2047059	N	0.00229600258172	0.299121					intronic	POC5							POC5 centriolar protein homolog (Chlamydomonas)	U-266/84	testis
chr5	79950781	79950781	A	G	rs1650697	N	0.486632794142	0.76857	N	N	N	D	nonsynonymous SNV	MSH3	NM_002439	1	235	79	I=>V		mutS homolog 3 (E. coli)	RH-30	kidney
chr5	82135819	82135851	TAAAAAAAAATCAAAAAAAAAAAAACAAGGAGT	TAAAAAAAAATCCAAAAAAAAAAAAACAAGGAGT		N	0.0151489442214						upstream	MIR3977
chr5	84726623	84726623	T	C	rs247681	N	5.4522655546e-07	0.615016					intergenic
chr5	95019519	95019519	A	G	rs40098	N	4.16790641111e-07	0.568091					upstream	SPATA9							spermatogenesis associated 9	HEL	testis
chr5	96086334	96086334	G	C	rs754615	N	9.23156112549e-05	0.29373	N	N	N	N	nonsynonymous SNV	CAST	NM_173060 NM_001042440 NM_001190442	17,18,19	1157,1349,1184	386,450,395	C=>S,C=>S,C=>S		calpastatin	HaCaT	esophagus
chr6	100024561	100024561	A	C	rs330854	N	1.55620538678e-09	0.934305					intergenic
chr6	10214063	10214086	CTTTTTTTTTTTTTTTTTACAGTC	CTTTTTTTTTTTTTTACAGTC		N	0.0418422929943						intergenic
chr6	108279546	108279546	T	G	rs6903090	N	0.308840036392	0.968051					upstream	SEC63							SEC63-like (S. cerevisiae)	Karpas-707	salivary gland
chr6	110797905	110797905	G	C	rs6922017	N	1.80167447184e-07	0.729633					upstream	SLC22A16							solute carrier family 22 (organic cation transporter), member 16	THP-1	testis
chr6	110797945	110797954	TCCCCCCAAG	TCCCCCCCAAG		N	0.107334449887						upstream	SLC22A16							solute carrier family 22 (organic cation transporter), member 16	THP-1	testis
chr6	110797994	110798001	GGCGCGCT	GGCGCT		N	0.28294596076						upstream	SLC22A16							solute carrier family 22 (organic cation transporter), member 16	THP-1	testis
chr6	110798019	110798019	G	A	rs11153237	N	3.37982122289e-08	0.729233					upstream	SLC22A16							solute carrier family 22 (organic cation transporter), member 16	THP-1	testis
chr6	110884412	110884412	G	A	rs2817790	N	1.90429815916e-07	0.795128					intergenic
chr6	114178831	114178844	CGCTGCTGCTGCTC	CGCTGCTGCTGCTGCTC		N	0.344451993704						5-UTR	MARCKS	NM_002356						myristoylated alanine rich protein kinase C substrate
chr6	114178831	114178844	CGCTGCTGCTGCTC	TGCTGCTGCTGCTC		N	0.258241504431						5-UTR	MARCKS	NM_002356						myristoylated alanine rich protein kinase C substrate
chr6	116572828	116572828	A	G	rs1204833	N	0.0020053058397	0.878794					3-UTR	TSPYL4	NM_021648						TSPY-like 4	SCLC-21H	cerebral cortex
chr6	119256348	119256348	T	C	rs62422269	N	0.486632794142	0.602236					upstream	MCM9							minichromosome maintenance complex component 9	THP-1	lymph node
chr6	119256391	119256391	G	A	rs62422270	N	0.366031259298	0.602236					upstream	MCM9							minichromosome maintenance complex component 9	THP-1	lymph node
chr6	123103476	123103476	A	G	rs7752838	N	2.71528612927e-08	0.642772					3-UTR	FABP7	NM_001319039 NM_001319041							WM-115	cerebral cortex
chr6	129837680	129837693	AAATAATATTAAAC	AAATATTAAAC		N	0.230446219444						3-UTR	LAMA2	NM_000426 NM_001079823					MUSCULAR DYSTROPHY, CONGENITAL MEROSIN-DEFICIENT	laminin, alpha 2	U-138-MG	placenta
chr6	131158670	131158670	C	T	rs955191	N	1.40074305932e-07	0.802516					downstream	SMLR1								Hep-G2	liver
chr6	13364549	13364549	T	A	rs553948	N	2.13384591916e-05	0.441893					3-UTR	GFOD1	NM_001242630 NM_001242628 NM_018988						glucose-fructose oxidoreductase domain containing 1	HMC-1	bone marrow
chr6	142468271	142468271	G	T	rs639658	N	0.486632794142	0.263978					upstream	NMBR VTA1
chr6	153324156	153324156	G	A	rs3818130	N	0.0140181193128	0.767971					upstream	MTRF1L							mitochondrial translational release factor 1-like	U-251-MG	bone marrow
chr6	159947024	159947047	GTTTTTTTTTTTTTTTTTACAACC	GTTTTTTTTTTTTTTTACAACC		N	0.0564181283116						intergenic
chr6	159947024	159947047	GTTTTTTTTTTTTTTTTTACAACC	GTTTTTTTTTTTTTTTTACAACC		N	0.0564181283116						intergenic
chr6	160180691	160180693	GCT	GACT		D	0.501634120941						intronic	SOD2							superoxide dismutase 2, mitochondrial	U-87-MG	appendix
chr6	1605548	1605548	G	T	rs188892640	N	2.51614684643e-09	0.00479233					upstream	FOXCUT
chr6	166657699	166657699	C	T	rs4710029	N	2.18057017755e-12	0.887979					ncRNA	LOC101929297
chr6	166796832	166796832	C	G	rs9295338	N	0.0134881194681	0.689896					upstream	MPC1								NB-4	heart muscle
chr6	166796911	166796911	C	T	rs1546853	N	0.0288785491139	0.689896					upstream	MPC1								NB-4	heart muscle
chr6	166799165	166799165	T	C	rs3757194	N	0.000127750405227	0.689896					intergenic
chr6	167276041	167276041	A	G	rs4710127	N	3.57772783532e-28	0.854633					upstream	RPS6KA2							ribosomal protein S6 kinase, polypeptide 2	U-2197	heart muscle
chr6	167370211	167370211	A	C	rs2247315	N	0.255698919296	0.549321					upstream	RNASET2								THP-1	spleen
chr6	167370532	167370532	C	G	rs2757041	N	0.00970804598182	0.539936					upstream	RNASET2								THP-1	spleen
chr6	168480713	168480713	C	A	rs13192116	N	5.24951758507e-07	0.730032					upstream	FRMD1								RPMI-8226	colon
chr6	169575068	169575068	T	G	rs117854773	N	2.4199620384e-05	0.480831					downstream	LOC101929504
chr6	170475495	170475495	A	G	rs3012401	N	2.43173320022e-13	0.894968					upstream	LOC102724511
chr6	170475812	170475812	T	C	rs2935054	N	6.56473321214e-06	0.881789					upstream	LOC102724511
chr6	24448061	24448061	A	C	rs796985	N	5.45460261492e-06	0.563698					intronic	GPLD1							glycosylphosphatidylinositol specific phospholipase D1	U-698	liver
chr6	25776949	25776949	G	A	rs11754288	N	0.000250143319136	0.259984	N	N	N	N	nonsynonymous SNV	SLC17A4	NM_001286121 NM_005495	10,9	17,952,318,17,1114,372	318,372	A=>T,A=>T		solute carrier family 17 (sodium phosphate), member 4	A-549	small intestine
chr6	26104071	26104090	GAAAAAAAAAAAAAACCGCG	GAAAAAAAAAAAAAAACCGCG		N	0.486632794142						upstream	HIST1H4C							histone cluster 1, H4c	HEK-293	bone marrow
chr6	26184102	26184102	G	A	rs7766641	N	0.486632794142	0.352835					nonsynonymous SNV	HIST1H2BE	NM_003523	1	79	27	G=>S
chr6	26271713	26271713	A	T	rs9393690	N	0.486632794142	0.611422					upstream	HIST1H3G
chr6	26272829	26272829	T	C	rs9393691	N	0.0436232089996	0.478634					upstream	HIST1H2BI
chr6	26322473	26322473	G	A	rs9358924	N	0.198345348239	0.376797					intergenic
chr6	26501471	26501477	AGGGGAC	AGGGAC		D	0.997916162014						upstream	BTN1A1							butyrophilin, subfamily 1, member A1	CACO-2	lymph node
chr6	26509330	26509330	C	G	rs9393728	N	7.38368180464e-06	0.56889	N	N	N	N	nonsynonymous SNV	BTN1A1	NM_001732	7	1509	503	D=>E		butyrophilin, subfamily 1, member A1	CACO-2	lymph node
chr6	26520767	26520767	G	C	rs1535275	N	0.486632794142	0.853834					intergenic
chr6	29581011	29581011	T	G	rs29226	N	0.0206439513713	0.108826					intronic	GABBR1							gamma-aminobutyric acid (GABA) B receptor, 1	TIME	cerebral cortex
chr6	29581110	29581113	ACCA	GCCG		N	0.00115215114783						nonframeshift substitution	GABBR1	NM_021904 NM_001470 NM_021903	11,12,7	1287,1473,1122				gamma-aminobutyric acid (GABA) B receptor, 1	TIME	cerebral cortex
chr6	29648991	29648994	ATGT	ATGTGT		N	0.100417539477						intergenic
chr6	2971566	2971566	G	T	rs9405600	N	0.0177367795259	0.232827					5-UTR	SERPINB6	NM_001297699							U-2197	small intestine
chr6	29718329	29718346	ATTTTTTTTTTTTTAACC	ATTTTTTTTTTTAACC		N	0.0125827267766						downstream	IFITM4P
chr6	29718355	29718355	A	C	rs909729	N	7.56501435717e-07	0.605431					downstream	IFITM4P
chr6	29718383	29718383	G	A	rs1610733	N	3.00456213154e-05	0.605431					downstream	IFITM4P
chr6	29718401	29718401	C	G	rs1610734	N	1.86446159205e-05	0.605032					downstream	IFITM4P
chr6	29718544	29718544	C	T	rs1610736	N	8.97931556665e-07	0.606629					downstream	IFITM4P
chr6	29720480	29720480	T	C	rs909723	N	1.6586331185e-05	0.870008					intergenic
chr6	29720604	29720604	A	G	rs1610623	N	2.78933566733e-06	0.870008					intergenic
chr6	29730923	29730923	C	A	rs1737068	N	1.44821878933e-08	0.869409					intergenic
chr6	29794658	29794658	G	A	rs1632947	N	0.486632794142	0.543131					upstream	HLA-G								SiHa	placenta
chr6	29796234	29796238	CAAGG	CAGG		N	0.0973427668214						intronic	HLA-G								SiHa	placenta
chr6	29796257	29796257	C	T	rs1625035	N	3.97184294343e-06	0.598243					intronic	HLA-G								SiHa	placenta
chr6	29796306	29796306	G	A	rs1624337	N	0.000754323031288	0.543131					intronic	HLA-G								SiHa	placenta
chr6	29798425	29798425	G	T	rs915669	N	2.96636899293e-05	0.598043					intronic	HLA-G								SiHa	placenta
chr6	29798459	29798459	C	G	rs915668	N	0.000145053272718	0.598043					intronic	HLA-G								SiHa	placenta
chr6	29798581	29798583	GTC	GATTTGTTCATGCCTTC		D	0.928954720497						3-UTR	HLA-G	NM_002127							SiHa	placenta
chr6	29798610	29798610	C	T	rs1707	N	7.04170497556e-06	0.90655					3-UTR	HLA-G	NM_002127							SiHa	placenta
chr6	29798617	29798617	G	C	rs1710	N	0.000445763231255	0.597843					3-UTR	HLA-G	NM_002127							SiHa	placenta
chr6	29799746	29799746	C	G	rs2517898	N	9.32221664698e-05	0.40635					downstream	HLA-G								SiHa	placenta
chr6	29854569	29854569	C	T	rs2734950	N	1.65648498296e-06	0.378594					upstream	HLA-H
chr6	29854628	29854628	T	C	rs9259202	N	1.10834272316e-10	0.797724					upstream	HLA-H
chr6	29857502	29857504	ACG	CCA		N	0.333522170782						ncRNA	HLA-H
chr6	29893040	29893040	C	T	rs1610751	N	5.53875738676e-13	0.912141					ncRNA	HCG4B
chr6	29893195	29893195	A	G	rs1056241	N	1.0327394051e-08	0.550319					ncRNA	HCG4B
chr6	29893293	29893293	G	A	rs1056242	N	0.000295564037515	0.538139					ncRNA	HCG4B
chr6	29895529	29895529	C	T	rs2517761	N	7.12411392101e-08	0.795727					upstream	HCG4B
chr6	29895682	29895682	A	G	rs1632904	N	2.33569281249e-07	0.795527					upstream	HCG4B
chr6	29895697	29895697	T	C	rs2471866	N	3.280803503e-05	0.523363					upstream	HCG4B
chr6	29895816	29895816	A	T	rs2517760	N	2.67816027133e-08	0.795927					upstream	HCG4B
chr6	29895830	29895833	CTCT	ACCC		N	0.0144581357017						upstream	HCG4B
chr6	29895830	29895833	CTCT	CCCC		N	0.0144581357017						upstream	HCG4B
chr6	29895838	29895840	CAG	CCAAG		N	0.313219249249						upstream	HCG4B
chr6	29895838	29895840	CAG	CCGGCAAG		N	0.313219249249						upstream	HCG4B
chr6	29897379	29897379	G	C	rs2517747	N	0.00554993050173	0.54992					intergenic
chr6	29910558	29910562	TCACA	ACACC		N	1.17218642117e-05						nonframeshift substitution	HLA-A	NM_001242758 NM_002116	2,2	98,98					SK-MEL-30	spleen
chr6	29911228	29911228	A	C	rs9256983	N	7.83994721587e-07	0.189497	N	N	N	N	nonsynonymous SNV	HLA-A	NM_001242758 NM_002116	3,3	527,527	176,176	E=>A,E=>A			SK-MEL-30	spleen
chr6	29913542	29913542	T	G	rs2499	N	0.000171410298208	0.925719					3-UTR	HLA-A	NM_001242758 NM_002116							SK-MEL-30	spleen
chr6	29913727	29913727	T	C	rs2571382	N	1.55542650759e-07	0.870208					downstream	HLA-A								SK-MEL-30	spleen
chr6	29913734	29913734	C	T	rs2975051	N	0.00671107461676	0.297524					downstream	HLA-A								SK-MEL-30	spleen
chr6	29926379	29926379	T	C	rs2975039	N	0.0426525957882	0.151957					intergenic
chr6	29940488	29940488	T	C	rs5009448	N	4.73106047139e-06	0.732628					intergenic
chr6	30131546	30131546	A	G	rs17194460	N	8.43782627726e-15	0.238618	N	N	N	N	nonsynonymous SNV	TRIM15	NM_033229	1	85	29	I=>V		tripartite motif-containing 15	HEL	duodenum
chr6	30882513	30882513	A	G	rs1264303	N	0.0235457178205	0.222045					intronic	VARS2							valyl-tRNA synthetase 2, mitochondrial (putative)	Hep-G2	cerebral cortex
chr6	30883920	30883920	C	T	rs1264299	N	1.09898373921e-05	0.222045					intronic	VARS2							valyl-tRNA synthetase 2, mitochondrial (putative)	Hep-G2	cerebral cortex
chr6	30887344	30887344	T	C	rs7738138	N	0.0019518713234	0.222644					intronic	VARS2							valyl-tRNA synthetase 2, mitochondrial (putative)	Hep-G2	cerebral cortex
chr6	30890483	30890483	G	T	rs2074506	N	2.61278510152e-05	0.222045	N	P	N	N	nonsynonymous SNV	VARS2	NM_020442 NM_001167733 NM_001167734	22,21,22	2038,1618,2128	680,540,710	V=>L,V=>L,V=>L		valyl-tRNA synthetase 2, mitochondrial (putative)	Hep-G2	cerebral cortex
chr6	30890871	30890871	T	C	rs753725	N	3.12101547024e-05	0.615815					intronic	VARS2							valyl-tRNA synthetase 2, mitochondrial (putative)	Hep-G2	cerebral cortex
chr6	30918400	30918400	A	G	rs2844699	N	1.06518882603e-08	0.221845		N	N	N	nonsynonymous SNV	DPCR1	NM_080870	2	2159	720	E=>G		diffuse panbronchiolitis critical region 1 (human)	NTERA-2	stomach
chr6	30920890	30920890	G	A	rs2240804	N	1.13451360448e-05	0.18151		N	N	N	nonsynonymous SNV	DPCR1	NM_080870	3	4178	1393	R=>Q		diffuse panbronchiolitis critical region 1 (human)	NTERA-2	stomach
chr6	30954245	30954245	T	C	rs1634730	N	9.39663724608e-09	0.710663	N	N	N	N	nonsynonymous SNV	MUC21	NM_001010909	2	293	98	V=>A			Karpas-707	esophagus
chr6	30954873	30954873	G	A	rs1625781	N	2.90853822662e-05	0.141174					synonymous SNV	MUC21	NM_001010909	2	921,307	307	T=>T			Karpas-707	esophagus
chr6	30993813	30993813	G	A	rs62399429	N	2.12854520214e-05	0.103035	N			N	nonsynonymous SNV	MUC22	NM_001198815	3	605	202	S=>N			A-431	esophagus
chr6	30993866	30993866	A	T	rs62399430	N	3.41483755619e-05	0.0974441	N			N	nonsynonymous SNV	MUC22	NM_001198815	3	658	220	T=>S			A-431	esophagus
chr6	30993880	30993880	G	C	rs62399431	N	1.4403834939e-05	0.100639	D			N	nonsynonymous SNV	MUC22	NM_001198815	3	672	224	E=>D			A-431	esophagus
chr6	30995178	30995178	C	T	rs111413526	N	1.81178929779e-05	0.0920527	D			N	nonsynonymous SNV	MUC22	NM_001198815	3	1970	657	T=>I			A-431	esophagus
chr6	30995187	30995187	T	C	rs62399443	N	4.15837675973e-05	0.0920527	N			N	nonsynonymous SNV	MUC22	NM_001198815	3	1979	660	I=>T			A-431	esophagus
chr6	30995297	30995297	A	G	rs62401664	N	1.10492019303e-05	0.0920527	N			N	nonsynonymous SNV	MUC22	NM_001198815	3	2089	697	I=>V			A-431	esophagus
chr6	30995532	30995532	T	C	rs62401665	N	0.000245991628617	0.0920527	N			N	nonsynonymous SNV	MUC22	NM_001198815	3	2324	775	M=>T			A-431	esophagus
chr6	30996132	30996132	C	T	rs12665700	N	3.79561570298e-05	0.0922524	D			N	nonsynonymous SNV	MUC22	NM_001198815	3	2924	975	T=>I			A-431	esophagus
chr6	30996509	30996509	G	A	rs35464561	N	1.17327463158e-05	0.0908546	N			N	nonsynonymous SNV	MUC22	NM_001198815	3	3301	1101	E=>K			A-431	esophagus
chr6	30997078	30997079	TG	CA		N	0.00014533031208						nonframeshift substitution	MUC22	NM_001198815	3	3870					A-431	esophagus
chr6	30997078	30997079	TG	CG		N	0.00014533031208						nonframeshift substitution	MUC22	NM_001198815	3	3870					A-431	esophagus
chr6	30997334	30997334	A	G	rs11756038	N	3.73429284082e-05	0.091254	N			N	nonsynonymous SNV	MUC22	NM_001198815	3	4126,1376	1376	T=>A			A-431	esophagus
chr6	30997352	30997352	A	G	rs11756039	N	3.68313776562e-05	0.102436	N			N	nonsynonymous SNV	MUC22	NM_001198815	3	4144	1382	S=>G			A-431	esophagus
chr6	30999997	30999997	T	C	rs10947121	N	4.26226665073e-10	0.453075	N			N	nonsynonymous SNV	MUC22	NM_001198815	4	4694	1565	L=>P			A-431	esophagus
chr6	31080471	31080471	T	C	rs1265052	N	8.0930523394e-10	0.548522					upstream	C6orf15								RH-30	skin
chr6	31113275	31113276	AG	GA		N	0.0247329194099						intronic	CCHCR1							coiled-coil alpha-helical rod protein 1	REH	testis
chr6	31116246	31116246	G	A	rs130068	N	4.41542351837e-06	0.409944	N	N	N	N	nonsynonymous SNV	CCHCR1	NM_001105564 NM_001105563 NM_019052	10,10,10	1516,1408,1249	506,470,417	R=>W,R=>W,R=>W		coiled-coil alpha-helical rod protein 1	REH	testis
chr6	31125067	31125072	CAACTA	CAACTAACTA		N	0.254279106855						intronic	CCHCR1							coiled-coil alpha-helical rod protein 1	REH	testis
chr6	31129616	31129616	A	G	rs2073721	N	6.53752330049e-10	0.769169	N	N	N	N	nonsynonymous SNV	TCF19	NM_007109 NM_001077511	3,3	631,631	211,211	M=>V,M=>V		transcription factor 19	U-138-MG	lymph node
chr6	31130502	31130502	T	C	rs1065461	N	4.02589239723e-10	0.769169					3-UTR	TCF19	NM_001318908 NM_001077511 NM_007109						transcription factor 19	U-138-MG	lymph node
chr6	31134721	31134725	ACTCA	ACTCCTCA		N	0.238150641322						5-UTR	POU5F1	NM_203289 NM_001285986 NM_001173531 NM_001285987							NTERA-2	small intestine
chr6	31134888	31134888	T	C	rs3130931	N	2.70495803534e-08	0.723642					5-UTR	POU5F1	NM_203289 NM_001285986 NM_001173531 NM_001285987							NTERA-2	small intestine
chr6	31165566	31165566	T	C	rs3094609	N	0.486632794142	0.895367					ncRNA	HCG27								Karpas-707	spleen
chr6	31170227	31170228	AG	AC		N	1.1164956959e-08						ncRNA	HCG27								Karpas-707	spleen
chr6	31170227	31170228	AG	GC		N	1.1164956959e-08						ncRNA	HCG27								Karpas-707	spleen
chr6	31170713	31170713	T	C	rs9263873	N	0.0250555370003	0.467452					ncRNA	HCG27								Karpas-707	spleen
chr6	31236715	31236723	GCCCCACCT	GCCCACTT		D	0.930214464664						3-UTR	HLA-C	NM_001243042 NM_002117							HDLM-2	lung
chr6	31237987	31237991	CCCAG	CCCAT		N	0.00385118694976						nonframeshift substitution	HLA-C	NM_002117 NM_001243042	4,4	891,891					HDLM-2	lung
chr6	31237987	31237991	CCCAG	TCCAT		N	0.00385118694976						nonframeshift substitution	HLA-C	NM_002117 NM_001243042	4,4	891,891					HDLM-2	lung
chr6	31238027	31238029	CAT	AAC		N	0.00818398781121						nonframeshift substitution	HLA-C	NM_002117 NM_001243042	4,4	853,853					HDLM-2	lung
chr6	31238027	31238029	CAT	CAC		N	0.00818398781121						nonframeshift substitution	HLA-C	NM_002117 NM_001243042	4,4	853,853					HDLM-2	lung
chr6	31238053	31238053	G	C	rs707908	N	6.93671381669e-07		N	N	N	N	nonsynonymous SNV	HLA-C	NM_002117 NM_001243042	4,4	829,829	277,277	Q=>E,Q=>E			HDLM-2	lung
chr6	31238942	31238942	G	T	rs2308590	N	6.80762314005e-05	0.429113	N	N	N	N	nonsynonymous SNV	HLA-C	NM_002117 NM_001243042	3,3	527,527	176,176	A=>E,A=>E			HDLM-2	lung
chr6	31239049	31239050	GG	GA		N	0.0899172201753						nonframeshift substitution	HLA-C	NM_002117 NM_001243042	3,3	419,419					HDLM-2	lung
chr6	31239049	31239050	GG	TA		N	0.0899172201753						nonframeshift substitution	HLA-C	NM_002117 NM_001243042	3,3	419,419					HDLM-2	lung
chr6	31239616	31239622	CGGTGTC	ATGTGGA		N	0.000803456758149						nonframeshift substitution	HLA-C	NM_002117 NM_001243042	2,2	97,97					HDLM-2	lung
chr6	31239616	31239622	CGGTGTC	CGGTGTA		N	0.000803456758149						nonframeshift substitution	HLA-C	NM_002117 NM_001243042	2,2	97,97					HDLM-2	lung
chr6	31239827	31239827	C	T	rs2308525	N	0.00196287850849	0.753195	N	N	N	N	nonsynonymous SNV	HLA-C	NM_002117 NM_001243042	1,1	22,8,22,8	8,8	A=>T,A=>T			HDLM-2	lung
chr6	31240010	31240014	GAGAA	GAGAAGAA		N	0.228147894144						upstream	HLA-C								HDLM-2	lung
chr6	31240060	31240060	A	G	rs2844622	N	0.0130429985002	0.753594					upstream	HLA-C								HDLM-2	lung
chr6	31254485	31254485	T	C	rs58860177	N	0.0119614079595	0.0764776					intergenic
chr6	31276447	31276447	G	C	rs1005599	N	4.87518933643e-13	0.898363					intergenic
chr6	31321360	31321360	A	G	rs2844585	N	2.96474809147e-07	0.902756					downstream	HLA-B								U-266/70	spleen
chr6	31322026	31322026	C	A	rs1054111	N	8.77538550412e-05	0.270367					3-UTR	HLA-B	NM_005514							U-266/70	spleen
chr6	31322303	31322303	C	G	rs2308655	N	1.39594293156e-12	0.592252	N	N	N	N	exonic	HLA-B								U-266/70	spleen
chr6	31323409	31323409	T	C	rs2523605	N	2.20964782881e-19	0.872604					intronic	HLA-B								U-266/70	spleen
chr6	31323468	31323468	G	T	rs3897530	N	6.31424871157e-13	0.288738					intronic	HLA-B								U-266/70	spleen
chr6	31323766	31323766	T	C	rs2523604	N	9.37971034176e-10	0.872204					intronic	HLA-B								U-266/70	spleen
chr6	31323776	31323778	TCT	TCCT		N	0.0151729155332						intronic	HLA-B								U-266/70	spleen
chr6	31323953	31323953	C	G	rs1131285	N	1.34345455649e-07	0.810903	N	N	N	N	exonic	HLA-B								U-266/70	spleen
chr6	31323958	31323960	TTG	GTC		N	0.00847094506025						exonic	HLA-B								U-266/70	spleen
chr6	31324003	31324004	TC	AG		N	1.12905276239e-07						exonic	HLA-B								U-266/70	spleen
chr6	31324003	31324004	TC	GT		N	1.12905276239e-07						exonic	HLA-B								U-266/70	spleen
chr6	31324200	31324201	GC	CC		N	0.00351198413409						exonic	HLA-B								U-266/70	spleen
chr6	31324200	31324201	GC	CG		N	0.00351198413409						exonic	HLA-B								U-266/70	spleen
chr6	31324206	31324209	GAGG	CCAA		N	0.00137298193295						exonic	HLA-B								U-266/70	spleen
chr6	31324206	31324209	GAGG	GATG		N	0.00137298193295						exonic	HLA-B								U-266/70	spleen
chr6	31324243	31324245	CCA	ACC		N	0.000265091250185						intronic	HLA-B								U-266/70	spleen
chr6	31324243	31324245	CCA	CCC		N	0.000265091250185						intronic	HLA-B								U-266/70	spleen
chr6	31324516	31324516	C	A	rs1131215	N	4.48589817097e-05	0.703874	N	D	D	N	exonic	HLA-B								U-266/70	spleen
chr6	31324602	31324604	TCT	GTC		N	0.0909385681152						exonic	HLA-B								U-266/70	spleen
chr6	31324666	31324667	AG	CA		N	2.48757532972e-05						exonic	HLA-B								U-266/70	spleen
chr6	31324666	31324667	AG	CG		N	2.48757532972e-05						exonic	HLA-B								U-266/70	spleen
chr6	31324702	31324705	CGGA	TGGC		N	1.70814136169e-08						exonic	HLA-B								U-266/70	spleen
chr6	31324829	31324830	GG	CA		N	0.486632794142						intronic	HLA-B								U-266/70	spleen
chr6	31324851	31324857	ACCCGCA	ACCCCGCA		N	0.486632794142						intronic	HLA-B								U-266/70	spleen
chr6	31324887	31324895	GGGCCGCCG	CTGCCCCCC		N	0.486632794142						exonic	HLA-B								U-266/70	spleen
chr6	31324925	31324925	A	G	rs1050458	N	0.0859244167805	0.792332	N	N	N	N	exonic	HLA-B								U-266/70	spleen
chr6	31324931	31324931	A	C	rs9266206	N	0.0342276208103	0.79393	N	N	N	N	exonic	HLA-B								U-266/70	spleen
chr6	31324953	31324953	C	T	rs9266207	N	0.0306664537638	0.766973					5-UTR	HLA-B	NM_005514							U-266/70	spleen
chr6	31324996	31324996	G	C	rs2596490	N	0.087538510561	0.759984					5-UTR	HLA-B	NM_005514							U-266/70	spleen
chr6	31325004	31325004	G	A	rs9266209	N	0.235529825091	0.664537					5-UTR	HLA-B	NM_005514							U-266/70	spleen
chr6	31325028	31325030	AAT	GAC		N	0.486632794142						upstream	HLA-B								U-266/70	spleen
chr6	31325049	31325049	G	A	rs9266214	N	0.173653736711	0.768171					upstream	HLA-B								U-266/70	spleen
chr6	31325090	31325092	CAA	TAG		N	0.486632794142						upstream	HLA-B								U-266/70	spleen
chr6	31325115	31325116	AG	GT		N	0.263868689537						upstream	HLA-B								U-266/70	spleen
chr6	31325151	31325151	T	A	rs9266221	N	0.0115042822435	0.6248					upstream	HLA-B								U-266/70	spleen
chr6	31325193	31325193	T	C	rs9266225	N	4.08079031331e-05	0.47524					upstream	HLA-B								U-266/70	spleen
chr6	31325199	31325199	A	G	rs9266226	N	8.54795143823e-06	0.47524					upstream	HLA-B								U-266/70	spleen
chr6	31325235	31325239	CAAGC	CAGC		N	0.000429247767897						upstream	HLA-B								U-266/70	spleen
chr6	31325270	31325270	G	C	rs9266227	N	9.9231609596e-09	0.691294					upstream	HLA-B								U-266/70	spleen
chr6	31325320	31325323	GCCC	CCCG		N	2.25262596132e-07						upstream	HLA-B								U-266/70	spleen
chr6	31325341	31325341	G	C	rs9266230	N	2.69308531031e-09	0.80012					upstream	HLA-B								U-266/70	spleen
chr6	31325380	31325380	C	T	rs9266231	N	3.7211226752e-16	0.800719					upstream	HLA-B								U-266/70	spleen
chr6	31325403	31325405	ACT	AT		N	2.31521268823e-09						upstream	HLA-B								U-266/70	spleen
chr6	31325424	31325424	G	T	rs9266232	N	2.93037202326e-17	0.800719					upstream	HLA-B								U-266/70	spleen
chr6	31326082	31326083	TC	CT		N	7.25711359428e-17						intergenic
chr6	31326131	31326131	C	T	rs73390208	N	1.87676666607e-16	0.44988					intergenic
chr6	31342061	31342066	CGGTTC	TGGTCT		N	0.0891419127584						intergenic
chr6	31346193	31346193	G	A	rs2507982	N	4.01571553788e-10	0.891174					intergenic
chr6	31346247	31346247	T	A	rs2507981	N	5.36014461983e-12	0.557708					intergenic
chr6	31349720	31349720	C	T	rs9266715	N	1.77710832161e-11	0.772364					intergenic
chr6	31349727	31349727	C	T	rs9266716	N	5.83887382888e-11	0.772165					intergenic
chr6	31349743	31349743	A	G	rs9266717	N	2.92239392408e-11	0.75					intergenic
chr6	31349788	31349788	C	T	rs9266718	N	1.88239468457e-09	0.75					intergenic
chr6	31349805	31349809	CGGCA	AGGCG		N	0.000134609988891						intergenic
chr6	31349819	31349819	C	A	rs9266721	N	2.91516499829e-09	0.574681					intergenic
chr6	31350090	31350090	C	T	rs2596569	N	1.13452129635e-12	0.785543					intergenic
chr6	31350232	31350232	A	G	rs2596568	N	9.8194848086e-11	0.785343					intergenic
chr6	31350328	31350328	A	G	rs2507979	N	2.53002108153e-09	0.785543					intergenic
chr6	31380161	31380163	GGC	GCTGC		D	0.878867208958						frameshift substitution	MICA	NM_001177519 NM_001289152 NM_001289153 NM_001289154	5,5,5,5	952,661,661,538					U-251-MG	lung
chr6	31380161	31380163	GGC	GCTGCTGCTGCTGC		D	0.878867208958						frameshift substitution	MICA	NM_001177519 NM_001289152 NM_001289153 NM_001289154	5,5,5,5	952,661,661,538					U-251-MG	lung
chr6	31440415	31440415	G	A	rs2516441	N	1.94431595446e-05	0.335663					downstream	HCG26
chr6	31465915	31465917	GGG	CGT		N	0.456648558378						5-UTR	MICB	NM_001289161 NM_005931							U-266/84	lymph node
chr6	31473844	31473844	T	C	rs2286713	N	2.88602223009e-06	0.851238					intronic	MICB								U-266/84	lymph node
chr6	31483752	31483752	A	G	rs3131632	N	2.26507215761e-10	0.829673					intergenic
chr6	31484032	31484032	T	C	rs3094001	N	1.48953416268e-09	0.878195					intergenic
chr6	31484054	31484054	T	C	rs3094000	N	1.21570375988e-09	0.829473					intergenic
chr6	31488145	31488145	A	G	rs3130637	N	8.17546641496e-10	0.814297					intergenic
chr6	31495523	31495525	AAT	AAAAGGCAT		N	0.124987080693						intergenic
chr6	31496776	31496776	T	G	rs3130054	N	2.05958561317e-09	0.883986					5-UTR	MCCD1	NM_001011700							Daudi	kidney
chr6	31496915	31496915	G	A	rs2259435	N	1.10784547758e-07	0.170927	N	N	N	N	nonsynonymous SNV	MCCD1	NM_001011700	1	124	42	E=>K			Daudi	kidney
chr6	31496925	31496925	G	A	rs3093983	N	1.62344757863e-12	0.878794	N	N	N	N	nonsynonymous SNV	MCCD1	NM_001011700	1	134	45	S=>N			Daudi	kidney
chr6	31497835	31497835	G	C	rs3115537	N	5.86348069191e-05	0.878994					3-UTR	MCCD1	NM_001011700							Daudi	kidney
chr6	31502861	31502861	A	G	rs3093976	N	4.81625420434e-06	0.879193					ncRNA	ATP6V1G2-DDX39B
chr6	31508761	31508761	C	T	rs2523508	N	0.00173603580333	0.878594					ncRNA	ATP6V1G2-DDX39B
chr6	31510105	31510105	A	G	rs2239528	N	0.486632794142	0.785343					ncRNA	DDX39B-AS1
chr6	31540141	31540141	A	C	rs2239704	N	3.70614761103e-09	0.649561					5-UTR	LTA	NM_000595						lymphotoxin A	HDLM-2	lymph node
chr6	31540481	31540507	GTCTCTCTCTCTCTCTCTCTTTCTCTG	GTCTCTCTCTCTCTCTCTCTCTTTCTCTG		D	0.747808516026						intronic	LTA							lymphotoxin A	HDLM-2	lymph node
chr6	31542308	31542308	T	C	rs1799964	N	0.153701469302	0.21905					downstream	LTA							lymphotoxin A	HDLM-2	lymph node
chr6	31556581	31556581	T	A	rs1052248	N	1.04835301329e-07	0.301717					3-UTR	LST1	NM_205838 NM_205839 NM_205837 NM_001166538 NM_007161 NM_205840						leukocyte specific transcript 1	THP-1	bone marrow
chr6	31583827	31583827	T	G	rs2259571	N	0.000339551304933	0.354233					5-UTR	AIF1	NM_032955						allograft inflammatory factor 1	NB-4	spleen
chr6	31595882	31595882	C	A	rs1046080	N	9.99556340475e-11	0.815495	N	N	N	N	nonsynonymous SNV	PRRC2A	NM_080686 NM_004638	12,12	2,1631,2,1631	544,544	T=>K,T=>K		proline-rich coiled-coil 2A	NB-4	testis
chr6	31628733	31628733	C	T	rs805262	N	0.0183449592441	0.382388					upstream,downstream	C6orf47;GPANK1
chr6	31637734	31637734	A	T	rs5872	N	0.00158759241458	0.249002					3-UTR	CSNK2B	NM_001282385 NM_001320						casein kinase 2, beta polypeptide	NB-4	skin
chr6	31745284	31745284	C	T	rs2736426	N	0.00261759874411	0.635383					upstream,downstream	VWA7;VARS
chr6	31762843	31762844	GG	CT		N	0.00325003755279						nonframeshift substitution	VARS	NM_006295	2	151				valyl-tRNA synthetase	Karpas-707	testis
chr6	31777946	31777946	C	T	rs2075800	N	5.59397376492e-05	0.255192	D	D	P	N	nonsynonymous SNV	HSPA1L	NM_005527	2	1804	602	E=>K		heat shock protein 1-like	HEK-293	testis
chr6	31839309	31839309	C	T	rs2242665	N	0.486632794142	0.618411	N	N	N	N	nonsynonymous SNV	SLC44A4	NM_001178045 NM_001178044 NM_025257	8,7,8	44,331,44,433,44,559	111,145,187	V=>I,V=>I,V=>I		solute carrier family 44, member 4	CAPAN-2	stomach
chr6	31861141	31861141	A	T	rs2844457	N	9.21915707295e-05	0.329073					5-UTR	EHMT2	NM_001318833						euchromatic histone lysine N-methyltransferase 2	NB-4	ovary
chr6	31864547	31864547	G	T	rs7887	N	0.000239587490796	0.329073	N	N	N	N	nonsynonymous SNV	EHMT2	NM_025256 NM_006709 NM_001289413	3,3,2	164,164,335	55,55,112	T=>N,T=>N,T=>N		euchromatic histone lysine N-methyltransferase 2	NB-4	ovary
chr6	31904983	31905003	CAAAAAAAAAAAAAAAATTGC	CAAAAAAAAAAAAAAATTGC		N	0.0239724311978						ncRNA	C2-AS1
chr6	31929014	31929014	A	C	rs437179	N	2.05880503756e-08	0.816693	N	N	N	N	nonsynonymous SNV	SKIV2L	NM_006929	8	640	214	M=>L		superkiller viralicidic activity 2-like (S. cerevisiae)	HeLa	spleen
chr6	32006597	32006597	C	T	rs6462	N	1.19855144476e-06	0.711462					intronic	CYP21A2								HDLM-2	adrenal gland
chr6	32026107	32026107	C	T	rs1009382	N	3.03148999592e-06	0.696086	N	N	N	N	nonsynonymous SNV	TNXB	NM_019105	22	7553	2518	G=>E		tenascin XB	U-2197	adrenal gland
chr6	32050067	32050067	T	C	rs185819	N	7.73961588152e-08	0.586262	N	N	N	N	nonsynonymous SNV	TNXB	NM_019105	9	3482	1161	H=>R		tenascin XB	U-2197	adrenal gland
chr6	32222706	32222706	A	G	rs3115570	N	4.8317181367e-09	0.470048					upstream	LOC101929163
chr6	32427572	32427572	C	G	rs9268830	N	0.0135277826339	0.253794					intergenic
chr6	32489671	32489672	AC	GA		N	7.7588178101e-05						intronic	HLA-DRB5								HDLM-2	lung
chr6	32489734	32489735	GG	AT		N	0.00527250906453						nonframeshift substitution	HLA-DRB5	NM_002125	2	317					HDLM-2	lung
chr6	32489744	32489744	G	T	rs1059598	N	1.63387194334e-05		N	N	N	N	nonsynonymous SNV	HLA-DRB5	NM_002125	2	308	103	A=>E			HDLM-2	lung
chr6	32489766	32489766	A	G	rs41562819	N	5.6641312085e-08		N	N	N	N	nonsynonymous SNV	HLA-DRB5	NM_002125	2	286	96	F=>L			HDLM-2	lung
chr6	32489813	32489813	G	C	rs79606458	N	0.00717746652663		D	D	D	N	nonsynonymous SNV	HLA-DRB5	NM_002125	2	239	80	T=>R			HDLM-2	lung
chr6	32489933	32489940	TCCTGCTG	AGCAGCTC		N	4.06193521485e-06						nonframeshift substitution	HLA-DRB5	NM_002125	2	112					HDLM-2	lung
chr6	32497960	32497962	CTT	AAC		N	0.411585688591						nonframeshift substitution	HLA-DRB5	NM_002125	1	40					HDLM-2	lung
chr6	32546626	32546626	C	G	rs1064715	N	0.486632794142						3-UTR	HLA-DRB1	NM_001243965 NM_002124							HDLM-2	lung
chr6	32546743	32546743	C	T	rs1064707	N	0.122919552028	0.704073					3-UTR	HLA-DRB1	NM_001243965 NM_002124							HDLM-2	lung
chr6	32546849	32546855	GAATGTG	AAATT		N	0.00256343721412						3-UTR	HLA-DRB1	NM_001243965 NM_002124							HDLM-2	lung
chr6	32549607	32549611	TAGGT	GAGGA		N	0.0060053546913						nonframeshift substitution	HLA-DRB1	NM_002124	3	375					HDLM-2	lung
chr6	32549607	32549611	TAGGT	TAGGA		N	0.0060053546913						nonframeshift substitution	HLA-DRB1	NM_002124	3	375					HDLM-2	lung
chr6	32551991	32551999	ACTCAGCGT	ACTCGGCAT		N	3.76722482542e-06						nonframeshift substitution	HLA-DRB1	NM_002124	2	257					HDLM-2	lung
chr6	32551991	32551999	ACTCAGCGT	GCTCCGCAG		N	3.76722482542e-06						nonframeshift substitution	HLA-DRB1	NM_002124	2	257					HDLM-2	lung
chr6	32552056	32552059	ACGG	ACGA		N	2.12985531989e-11						nonframeshift substitution	HLA-DRB1	NM_002124	2	197					HDLM-2	lung
chr6	32552056	32552059	ACGG	GCGT		N	2.12985531989e-11						nonframeshift substitution	HLA-DRB1	NM_002124	2	197					HDLM-2	lung
chr6	32552075	32552075	A	G	rs1064664	N	1.35379378606e-13	0.309505	N	N	N	N	nonsynonymous SNV	HLA-DRB1	NM_002124	2	181	61	Y=>H			HDLM-2	lung
chr6	32557552	32557552	A	C	rs1059546	N	0.435580611229	0.402157					5-UTR	HLA-DRB1	NM_001243965 NM_002124							HDLM-2	lung
chr6	32557552	32557552	A	G	rs1059546	N	0.486632794142	0.294529					5-UTR	HLA-DRB1	NM_001243965 NM_002124							HDLM-2	lung
chr6	32709204	32709204	G	C	rs9276401	N	1.22317516116e-08	0.17492					5-UTR	HLA-DQA2	NM_020056							HDLM-2	lymph node
chr6	32713188	32713188	C	T	rs2213565	N	1.10326119795e-07	0.852436					intronic	HLA-DQA2								HDLM-2	lymph node
chr6	32781776	32781776	C	A	rs2856997	N	6.91059369728e-08	0.506789					intronic	HLA-DOB								Daudi	lymph node
chr6	32784753	32784753	T	C	rs2071470	N	1.50966548355e-30	0.308906					5-UTR	HLA-DOB	NM_002120							Daudi	lymph node
chr6	32796521	32796521	C	T	rs17034	N	4.94654086651e-05	0.297724					3-UTR	TAP2	NM_000544 NM_001290043						transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	HEL	lymph node
chr6	32797168	32797168	G	A	rs241442	N	6.92783578415e-05	0.291534					intronic	TAP2							transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	HEL	lymph node
chr6	32797876	32797876	A	G	rs241436	N	1.23426787013e-07	0.434305					intronic	TAP2							transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	HEL	lymph node
chr6	32904981	32904981	G	A	rs1042337	N	2.45308894725e-12	0.784545	N	N	N	N	nonsynonymous SNV	HLA-DMB	NM_002118	3	590	197	T=>I			HDLM-2	lymph node
chr6	32948607	32948607	C	T	rs1049414	N	2.01457588389e-08	0.684904					3-UTR	BRD2	NM_005104 NM_001113182 NM_001291986 NM_001199455 NM_001199456						bromodomain containing 2	HEK-293	bone marrow
chr6	33036287	33036288	GG	AA		N	0.0120911998674						intronic	HLA-DPA1								HDLM-2	lymph node
chr6	33036312	33036312	A	G	rs72879609	N	0.000144625417306	0.438898					intronic	HLA-DPA1								HDLM-2	lymph node
chr6	33036399	33036401	CTC	CTTT		D	0.980794966221						intronic	HLA-DPA1								HDLM-2	lymph node
chr6	33036950	33036951	CA	CG		D	0.955665290356						nonframeshift substitution	HLA-DPA1	NM_033554 NM_001242524 NM_001242525	3,4,4	473,473,473					HDLM-2	lymph node
chr6	33036950	33036951	CA	TG		D	0.955665290356						nonframeshift substitution	HLA-DPA1	NM_033554 NM_001242524 NM_001242525	3,4,4	473,473,473					HDLM-2	lymph node
chr6	33037080	33037082	GGA	AGG		N	0.0410279072821						intronic	HLA-DPA1								HDLM-2	lymph node
chr6	33037412	33037413	GC	CA		N	0.486632794142						intronic	HLA-DPA1								HDLM-2	lymph node
chr6	33037424	33037424	T	C	rs1126542	N	0.0248123537749	0.439097	N	N	N	N	nonsynonymous SNV	HLA-DPA1	NM_033554 NM_001242524 NM_001242525	2,3,3	340,114,340,114,340,114	114,114,114	T=>A,T=>A,T=>A			HDLM-2	lymph node
chr6	33037579	33037580	AT	TG		N	0.407891154289						nonframeshift substitution	HLA-DPA1	NM_033554 NM_001242524 NM_001242525	2,3,3	184,184,184					HDLM-2	lymph node
chr6	33048457	33048461	CTTTT	GTGTA		N	0.000498974637594						nonframeshift substitution	HLA-DPB1	NM_002121	2	109					HDLM-2	lymph node
chr6	33048661	33048663	ATG	GTA		N	0.000387588632293						nonframeshift substitution	HLA-DPB1	NM_002121	2	313					HDLM-2	lymph node
chr6	33048686	33048694	GCGGGCCCA	ACGAGGCCG		N	0.486632794142						nonframeshift substitution	HLA-DPB1	NM_002121	2	338					HDLM-2	lymph node
chr6	33052717	33052723	ACGCTCC	CCACTCG		N	0.00569336861372						intronic	HLA-DPB1								HDLM-2	lymph node
chr6	33052736	33052736	G	A	rs1126537	N	7.23011817172e-06		N	N	N	N	nonsynonymous SNV	HLA-DPB1	NM_002121	3	374	125	R=>K			HDLM-2	lymph node
chr6	33054325	33054325	G	C	rs1126719	N	0.000287799717626	0.368011					3-UTR	HLA-DPB1	NM_002121							HDLM-2	lymph node
chr6	33054331	33054331	T	C	rs1126723	N	0.038886860013						3-UTR	HLA-DPB1	NM_002121							HDLM-2	lymph node
chr6	33054342	33054342	T	A	rs1042448	N	0.000394385715481	0.364018					3-UTR	HLA-DPB1	NM_002121							HDLM-2	lymph node
chr6	33054353	33054355	GAA	AAC		N	0.00757699040696						3-UTR	HLA-DPB1	NM_002121							HDLM-2	lymph node
chr6	33054373	33054373	C	T	rs1042467	N	2.50294069701e-05	0.36262					3-UTR	HLA-DPB1	NM_002121							HDLM-2	lymph node
chr6	33054378	33054381	GCAT	ACAC		N	0.00703751295805						3-UTR	HLA-DPB1	NM_002121							HDLM-2	lymph node
chr6	33054378	33054381	GCAT	GCAC		N	0.00703751295805						3-UTR	HLA-DPB1	NM_002121							HDLM-2	lymph node
chr6	33054386	33054386	C	T	rs1042497	N	3.23442291119e-05	0.360224					3-UTR	HLA-DPB1	NM_002121							HDLM-2	lymph node
chr6	33054400	33054404	TTCAA	CTCAG		N	0.0129381325096						3-UTR	HLA-DPB1	NM_002121							HDLM-2	lymph node
chr6	33054410	33054414	AAATT	CAAGA		N	0.0303678028286						3-UTR	HLA-DPB1	NM_002121							HDLM-2	lymph node
chr6	33054457	33054457	A	G	rs1042544	N	2.39802029682e-05	0.46266					3-UTR	HLA-DPB1	NM_002121							HDLM-2	lymph node
chr6	33055047	33055047	A	G	rs9277538	N	6.65887057494e-07	0.460064					3-UTR	HLA-DPB1	NM_002121							HDLM-2	lymph node
chr6	33172905	33172905	T	C	rs365339	N	0.0129108978435	0.878395					intronic	HSD17B8								U-266/70	liver
chr6	33254556	33254563	CCCACCAG	CGCCACCAG		D	0.941022098064						intronic	WDR46							WD repeat domain 46	U-266/84	lymph node
chr6	33256984	33256984	C	T	rs463260	N	0.486632794142	0.585264					5-UTR	WDR46	NM_001164267 NM_005452						WD repeat domain 46	U-266/84	lymph node
chr6	33272712	33272712	C	A	rs2071889	N	0.000103198908619	0.48722					intronic	TAPBP							TAP binding protein	Karpas-707	spleen
chr6	33272855	33272855	G	C	rs2071888	N	7.74284217187e-06	0.591254	N	P	N	N	nonsynonymous SNV	TAPBP	NM_172208 NM_172209 NM_003190	4,3,4	779,518,779	260,173,260	T=>R,T=>R,T=>R		TAP binding protein	Karpas-707	spleen
chr6	33283766	33283766	T	C	rs3130100	N	8.16369208678e-07	0.534345	N	N	N	N	nonsynonymous SNV	ZBTB22	NM_005453 NM_001145338	2,2	928,310,928,310	310,310	T=>A,T=>A			MCF-7	ovary
chr6	33286388	33286407	CTTTTTTTTTTTTTTAAAGA	CTTTTTTTTTTTTTTTAAAGA		N	0.113190636039						3-UTR	DAXX	NM_001141969 NM_001141970 NM_001254717 NM_001350						Fas death domain-associated protein	HEL	lymph node
chr6	33290547	33290547	T	A	rs2073524	N	0.00542533770204	0.526757					intronic	DAXX							Fas death domain-associated protein	HEL	lymph node
chr6	33290825	33290825	A	G	rs2073525	N	0.486632794142	0.592452					upstream	DAXX							Fas death domain-associated protein	HEL	lymph node
chr6	33307400	33307402	TAT	TGAT		N	0.00876371562481						intergenic
chr6	33646328	33646328	T	C	rs2274195	N	1.94532702835e-07	0.769169					intronic	ITPR3							inositol 1,4,5-triphosphate receptor 3	HeLa	skin
chr6	33647651	33647651	A	G	rs4713654	N	0.402362376451						intronic	ITPR3							inositol 1,4,5-triphosphate receptor 3	HeLa	skin
chr6	33648228	33648228	C	T	rs2229638	N	2.7870254371e-07	0.913738					intronic	ITPR3(NM_002224:exon32:c.4345+2C>T)
chr6	33679596	33679596	A	C	rs2274458	N	0.486632794142	0.53135					upstream	UQCC2								THP-1	heart muscle
chr6	33690796	33690797	CA	TG		N	0.000540353183169						nonframeshift substitution	IP6K3	NM_054111 NM_001142883	6,7	933,933				inositol hexaphosphate kinase 3	RH-30	thyroid gland
chr6	33864998	33864998	G	A	rs3800341	N	4.62641338572e-08	0.707668					upstream	LINC01016
chr6	33867897	33867900	ACCG	GCCA		N	0.00059123930987						downstream	MIR7159
chr6	34725478	34725478	G	A	rs7743724	N	0.0987121388316	0.14397					intronic	SNRPC								U-937	heart muscle
chr6	34725658	34725658	G	T	rs28398813	N	0.137333005667		D				intronic	SNRPC								U-937	heart muscle
chr6	34735652	34735677	CTTTTTTTTTTTTTTTTTCCTCACCC	CTTTTTTTTTTTTTTTTCCTCACCC		N	0.466496288776						intronic	SNRPC								U-937	heart muscle
chr6	34759881	34759884	AAAG	GAAC		N	0.24266409874						5-UTR	UHRF1BP1	NM_017754						UHRF1 (ICBP90) binding protein 1	K-562	testis
chr6	34824636	34824636	A	G	rs11755393	N	0.00353674474172	0.467652	N	N	N	N	nonsynonymous SNV	UHRF1BP1	NM_017754	11	1361	454	Q=>R		UHRF1 (ICBP90) binding protein 1	K-562	testis
chr6	34826921	34826921	G	C	rs61732793	N	7.0438880357e-05	0.0253594	N	N	N	N	nonsynonymous SNV	UHRF1BP1	NM_017754	14	2788	930	E=>Q		UHRF1 (ICBP90) binding protein 1	K-562	testis
chr6	34831856	34831856	T	C	rs13205210	N	0.0152435526252	0.14377	D	P	N	N	nonsynonymous SNV	UHRF1BP1	NM_017754	15	3293	1098	M=>T		UHRF1 (ICBP90) binding protein 1	K-562	testis
chr6	34840398	34840398	G	A	rs3734261	N	0.312443315983	0.118011					3-UTR	UHRF1BP1	NM_017754						UHRF1 (ICBP90) binding protein 1	K-562	testis
chr6	34855748	34855748	G	C	rs1051115	N	0.194150388241	0.155551					5-UTR	TAF11	NM_001270488 NM_005643							U-266/84	testis
chr6	35258539	35258539	C	A	rs763157	N	1.73004500539e-05	0.921126					intronic	ZNF76								SCLC-21H	thyroid gland
chr6	35479574	35479574	G	C	rs7764472	N	2.75655281712e-07	0.874401	N	N	N	N	nonsynonymous SNV	TULP1	NM_003322	4	200	67	T=>R	RETINITIS PIGMENTOSA 14	tubby like protein 1	BEWO	prostate
chr6	35656563	35656563	T	C	rs9462103	N	0.486632794142	0.785343					5-UTR	FKBP5	NM_001145776						FK506 binding protein 5	U-698	adipose tissue
chr6	36098191	36098191	C	A	rs12210904	N	0.18297997117	0.228834					upstream	MAPK13							mitogen-activated protein kinase 13	RPMI-8226	esophagus
chr6	36165213	36165213	C	T	rs4713936	N	0.0464880801737	0.608427					intronic	BRPF3							bromodomain and PHD finger containing, 3	SCLC-21H	testis
chr6	36823502	36823506	GAATT	GAAATT		D	0.999563276768						3-UTR	PPIL1	NM_016059						peptidylprolyl isomerase (cyclophilin)-like 1	K-562	adrenal gland
chr6	36989846	36989846	G	C	rs831500	N	2.38945858655e-08	0.751398					intronic	FGD2							FYVE, RhoGEF and PH domain containing 2	HDLM-2	spleen
chr6	37450914	37450914	T	C	rs10692	N	1.1012261325e-07	0.670927					3-UTR	CCDC167	NM_138493						coiled-coil domain containing 167	U-698	lymph node
chr6	4020658	4020658	G	A	rs1969836	N	0.0274502243847	0.505791					upstream	PRPF4B							PRP4 pre-mRNA processing factor 4 homolog B (yeast)	K-562	bone marrow
chr6	4020695	4020695	A	G	rs1969837	N	0.00956621393561	0.507588					upstream	PRPF4B							PRP4 pre-mRNA processing factor 4 homolog B (yeast)	K-562	bone marrow
chr6	4066120	4066120	G	A	rs866165	N	3.93922050534e-08	0.958267					downstream	PRPF4B							PRP4 pre-mRNA processing factor 4 homolog B (yeast)	K-562	bone marrow
chr6	41462386	41462418	ATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTC	ATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTC		N	0.140242367983						intergenic
chr6	41715311	41715311	G	A	rs2027525	N	0.00149599497672	0.992412					upstream	PGC							progastricsin (pepsinogen C)	Hep-G2	stomach
chr6	43394764	43394764	A	C	rs10948077	N	8.32119549159e-05	0.497204					upstream	ABCC10							ATP-binding cassette, sub-family C (CFTR/MRP), member 10	NB-4	lymph node
chr6	43399837	43399837	A	G	rs700008	N	5.37895914476e-08	0.884385					5-UTR	ABCC10	NM_033450						ATP-binding cassette, sub-family C (CFTR/MRP), member 10	NB-4	lymph node
chr6	44122416	44122427	TCTCCTCCTTCA	TCTCCTTCA		N	0.416048079729						intronic	TMEM63B							transmembrane protein 63b	K-562	lung
chr6	44184153	44184153	G	A	rs9462976	N	1.88051572536e-07	0.329273					upstream	LOC101929726
chr6	44244970	44244970	C	G	rs16871694	N	0.000177933528903	0.144768					3-UTR	TMEM151B	NM_001137560							SCLC-21H	cerebral cortex
chr6	44245930	44245930	C	T	rs325018	N	6.6547066524e-08	0.639577					3-UTR	TMEM151B	NM_001137560							SCLC-21H	cerebral cortex
chr6	44255459	44255459	G	A	rs324146	N	1.82075723387e-08	0.644569	D	N	N	N	nonsynonymous SNV	TCTE1	NM_182539	2	104	35	P=>L		t-complex-associated testis expressed 1	Karpas-707	testis
chr6	46107752	46107752	C	G	rs7451713	N	5.46582941752e-06	0.451677	N	N	N	N	nonsynonymous SNV	ENPP4	NM_014936	2	432	144	H=>Q		ectonucleotide pyrophosphatase/phosphodiesterase 4	U-266/84	bone marrow
chr6	52109408	52109425	GTTTTTTTTTTTATTCCA	GTTTTTTTTTTATTCCA		N	1.67373618751e-05						upstream	IL17F								Karpas-707	urinary bladder
chr6	52695563	52695563	A	T	rs4712019	N	8.52728609946e-10	0.974241					downstream	GSTA5								BEWO	adrenal gland
chr6	52735206	52735206	A	G	rs9474335	N	5.66747537789e-10	0.476038					intergenic
chr6	52966315	52966315	T	C	rs2013517	N	9.42646738444e-10	0.797324					downstream	FBXO9							f-box protein 9	SCLC-21H	adrenal gland
chr6	69772817	69772817	C	G	rs2793459	N	1.56784562932e-06	0.595447					intronic	ADGRB3
chr6	70778378	70778379	GC	CT		N	0.000883327797055						intronic	COL19A1							collagen, type XIX, alpha 1	RH-30	lymph node
chr6	70812123	70812123	A	G	rs7772672	N	1.49427350493e-07	0.845647					intronic	COL19A1							collagen, type XIX, alpha 1	RH-30	lymph node
chr6	74036592	74036592	C	G	rs517471	N	0.0284995101392	0.940895					intergenic
chr6	78174209	78174209	T	C	rs1778258	N	0.00109576876275	0.931709					upstream	HTR1B								TIME	stomach
chr6	80816296	80816296	T	C	rs2298307	N	0.486632794142	0.582468					upstream	BCKDHB							branched chain ketoacid dehydrogenase E1, beta polypeptide	RH-30	liver
chr6	84290137	84290161	TAAAGAAAAAAAAAAAAAACTAGAT	TAAAAAAAAAAAAAACTAGAT		N	0.147144600749						intronic	SNAP91							synaptosomal-associated protein 91	SCLC-21H	cerebral cortex
chr6	84419006	84419006	C	G	rs217281	N	9.36528920192e-07	0.959864					5-UTR	SNAP91	NM_014841						synaptosomal-associated protein 91	SCLC-21H	cerebral cortex
chr6	89772615	89772615	A	G	rs10447337	N	6.59551369608e-06	0.266573					intergenic
chr6	90039670	90039670	G	C	rs10502	N	8.05024342299e-07	0.682308	N	N	N	N	nonsynonymous SNV	UBE2J1	NM_016021	8	685	229	L=>V		ubiquitin-conjugating enzyme E2J 1	U-266/70	lymph node
chr6	97064813	97064813	C	A	rs57425973	N	8.25263759907e-06	0.461861					3-UTR	FHL5	NM_001170807 NM_020482 NM_001322466 NM_001322467						four and a half LIM domains 5	A-431	testis
chr6	97120988	97120988	G	A	rs9374032	N	9.25914178662e-10	0.977436					intergenic
chr6	99622532	99622551	CAAAAAAAAAAAAAGAGTTT	CAAAAAAAAAAAAAAGAGTTT		N	0.103372104466						intergenic
chr7	100091795	100091795	T	C	rs12539172	N	1.39139338939e-10	0.759585					3-UTR	NYAP1	NM_173564						neuronal tyrosine-phosphorylated phosphoinositide 3-kinase adaptor 1	SH-SY5Y	cerebral cortex
chr7	100240771	100240771	A	T	rs1052897	N	1.85780973938e-11	0.886182					3-UTR	ACTL6B	NM_016188						actin-like 6B	SCLC-21H	cerebral cortex
chr7	100271521	100271521	T	C	rs221789	N	0.0021371350158	0.859026					5-UTR	GNB2	NM_005273						guanine nucleotide binding protein (G protein), beta 2	MCF-7	esophagus
chr7	100284913	100284913	C	G	rs221796	N	0.486632794142	0.909944					intronic	GIGYF1							GRB10 interacting GYF protein 1	NB-4	ovary
chr7	100285974	100285974	A	C	rs221797	N	7.9450301893e-10	0.920327					5-UTR	GIGYF1	NM_022574						GRB10 interacting GYF protein 1	NB-4	ovary
chr7	100817676	100817676	A	G	rs740107	N	1.47277601226e-09	0.786741					intronic	NAT16								SH-SY5Y	thyroid gland
chr7	100933785	100933791	CGGGGCA	CGGGGGCA		N	0.188157975674						intergenic
chr7	100933792	100933792	G	C	rs2410812	N	0.0112245762721	0.419529					intergenic
chr7	101005735	101005735	C	T	rs10228118	N	0.00270113511942	0.622005					upstream	COL26A1
chr7	101459161	101459161	T	C	rs28650922	N	0.400593876839	1					upstream	CUX1							cut-like homeobox 1	U-698	thyroid gland
chr7	102113563	102113575	TGGGGGGGGGTCT	TGGGGGGGGTCT		D	0.86116206646						3-UTR	LRWD1	NM_001317721 NM_152892 NM_006234						leucine-rich repeats and WD repeat domain containing 1	U-266/84	testis
chr7	102122620	102122620	G	C	rs3988061	N	0.0086124362424						downstream	RASA4B								U-138-MG	uterus
chr7	102574999	102575015	TGAAGAAGAAAAGGAAC	TGAAGAAAAGGAAC		N	1.16269520731e-05						nonframeshift substitution	LRRC17	NM_001031692 NM_005824	2,2	639,639					RH-30	ovary
chr7	102743893	102743893	C	T	rs3181009	N	8.55135056099e-08	0.863618	N	N	N	N	nonsynonymous SNV	NAPEPLD	NM_001122838 NM_198990	5,5	1165,1165	389,389	D=>N,D=>N		N-acyl phosphatidylethanolamine phospholipase D	U-2197	kidney
chr7	10492863	10492863	C	T	rs6464013	N	1.04395225797e-09	0.795527					intergenic
chr7	107880612	107880612	A	G	rs1269634	N	4.12936795868e-09	0.451677					5-UTR	NRCAM	NM_001037132 NM_001193582 NM_001193583 NM_001193584 NM_005010						neuron-glia-CAM-related cell adhesion molecule	EFO-21	cerebral cortex
chr7	108204479	108204479	A	G	rs40943	N	0.0174575448036	0.636981					3-UTR	THAP5	NM_001287598 NM_182529 NM_001130475 NM_001287599 NM_001287601							U-266/70	thyroid gland
chr7	111202501	111202501	G	T	rs12154613	N	0.175942152739	0.79992					intronic	IMMP2L							IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	SK-MEL-30	thyroid gland
chr7	117024820	117024820	T	G	rs1029396	N	2.38867073676e-07	0.224241	D	P	N	N	nonsynonymous SNV	ASZ1	NM_001301821 NM_001301822 NM_130768	6,5,6	647,23,647	216,8,216	K=>T,K=>T,K=>T		ankyrin repeat, SAM and basic leucine zipper domain containing 1	U-266/70	testis
chr7	117176568	117176597	AGATTGATTGATTGATTGATTGATTGATTT	AGATTGATTGATTGATTGATTGATTT		N	0.425431638956						intronic	CFTR						CYSTIC FIBROSIS	cystic fibrosis transmembrane conductance regulator	MOLT-4	pancreas
chr7	117188660	117188690	ATGTGTGTGTGTGTGTGTGTGTGTTTTTTTA	ATGTGTGTGTGTGTGTGTGTGTGTGTTTTTTTA		N	0.00990120880306						intronic	CFTR						CYSTIC FIBROSIS	cystic fibrosis transmembrane conductance regulator	MOLT-4	pancreas
chr7	117825549	117825549	T	G	rs9655829	N	0.000734488130547	0.743411					intronic	LSM8
chr7	120765954	120765954	T	C	rs798949	N	0.000153955887072	0.505591					intronic	CPED1								K-562	ovary
chr7	120773954	120773954	A	G	rs61128227	N	3.74746377929e-05	0.374201					intronic	CPED1								K-562	ovary
chr7	12609988	12609988	G	C	rs2240571	N	3.13375358019e-06	0.52476					upstream	SCIN							scinderin	SK-BR-3	small intestine
chr7	1271819	1271819	G	A	rs10249139	N	1.41352107796e-09	0.96865					upstream	UNCX								NB-4	kidney
chr7	127232201	127232201	A	G	rs10808230	N	3.74147106186e-07	0.994808					downstream	ARF5								SCLC-21H	esophagus
chr7	127847324	127847324	C	A	rs11766170	N	1.41030298551e-09	0.747604					upstream	MIR129-1
chr7	130149326	130149326	G	A	rs12706943	N	4.89545925575e-07	0.429113					intronic	COPG2							coatomer protein complex, subunit gamma 2	RT-4	ovary
chr7	130613566	130613566	C	T	rs207244	N	6.68761117595e-07	0.954273					intergenic
chr7	133984127	133984127	A	G	rs2075371	N	3.50556539352e-09	0.475639					intronic	SLC35B4							solute carrier family 35, member B4	U-266/84	placenta
chr7	134849213	134849213	G	A	rs3800592	N	2.18773334382e-06	0.455871	N	N	N	N	nonsynonymous SNV	TMEM140	NM_018295	2	20	7	R=>Q			U-266/70	adipose tissue
chr7	135347239	135347253	GCCCCCCCCGCGCAT	GCCCCCCCCCGCGCAT		N	0.486632794142						5-UTR	C7orf73	NM_001130929							U-87-MG	esophagus
chr7	13932601	13932601	C	T	rs28557435	N	9.03214303349e-09	0.634585					3-UTR	ETV1	NM_001163150 NM_001163151 NM_001163152 NM_001163147 NM_004956 NM_001163149 NM_001163148						ets variant gene 1	U-87-MG	salivary gland
chr7	141947082	141947082	A	C	rs916011	N	6.90085869337e-07	0.562101					upstream	MOXD2P
chr7	141998321	141998321	C	T	rs116809379	N	3.68818636656e-13	0.978035					intergenic
chr7	142216750	142216750	A	T		N	0.00103328528348						intergenic
chr7	142216818	142216818	A	C		N	0.00448559224606						intergenic
chr7	142216823	142216824	AG	GA		N	0.0206724759191						intergenic
chr7	142216842	142216842	G	A	rs376929540	N	0.0330319702625						intergenic
chr7	142216863	142216863	T	C		N	0.0421542152762						intergenic
chr7	142379096	142379096	T	C	rs115675145	N	3.38658046051e-10	0.979633					intergenic
chr7	142481269	142481269	A	T		N	0.000246282172156						ncRNA	PRSS3P2
chr7	142481287	142481292	GCCCAT	TCCCGC		N	0.000365683750715						ncRNA	PRSS3P2
chr7	142482410	142482410	T	C		N	0.000166833531694						downstream	PRSS3P2
chr7	142482434	142482439	GCTCTC	CCTCCT		N	0.000278146821074						downstream	PRSS3P2
chr7	142482455	142482455	C	T		N	0.000282798224362						downstream	PRSS3P2
chr7	148799338	148799338	C	T	rs62507512	N	2.20962338062e-05	0.603435					downstream	ZNF425								MCF-7	ovary
chr7	149321976	149321976	G	C	rs3213668	N	0.486632794142	0.241214					upstream	ZNF767P
chr7	149322876	149322876	T	C	rs171343	N	0.139902055264	0.771366					upstream	ZNF767P
chr7	154860139	154860155	AGGGGGGAAGGAGAGAC	AGGGGAAGGAGAGAC		N	0.0231105796993						ncRNA	HTR5A-AS1								PC-3	cerebral cortex
chr7	154876385	154876386	AC	TT		N	0.00200123502873						3-UTR	HTR5A	NM_024012						5-hydroxytryptamine (serotonin) receptor 5A	Karpas-707	cerebral cortex
chr7	154997261	154997271	ACCCCCCCATT	ACCCCCCATT		N	0.486632794142						intergenic
chr7	155327307	155327307	A	G	rs4716676	N	1.30296654637e-17	0.367013					upstream	CNPY1							canopy 1 homolog (zebrafish)	RPMI-8226	pancreas
chr7	158498053	158498053	T	C	rs4909097	N	0.0137962987646	0.997204					upstream	NCAPG2							non-SMC condensin II complex, subunit G2	MCF-7	testis
chr7	1787003	1787003	G	C	rs1534788	N	2.00686017138e-07	0.43151					3-UTR	ELFN1	NM_001128636							U-2-OS	liver
chr7	19813018	19813018	T	C	rs12673970	N	0.0441311262548	0.38778					upstream	TMEM196								SCLC-21H	cerebral cortex
chr7	20418926	20418926	T	C	rs1042277	N	0.00584353040904	0.335663					intronic	ITGB8							integrin beta 8	WM-115	kidney
chr7	20817492	20817496	CAAGC	CAAAGC		N	0.274779945612						intergenic
chr7	23531399	23531399	G	C	rs6975966	N	3.7957320842e-08	0.983227					downstream	RPS2P32
chr7	23872024	23872037	CTTTGGTTTGGTTA	CTTTGTTTGGTTTGGTTA		N	0.00369210611098						3-UTR	STK31	NM_001260505 NM_031414 NM_001260504 NM_032944						serine threonine kinase 31	CACO-2	testis
chr7	27201532	27201532	C	A	rs875896	N	5.97685669845e-08	0.538538					downstream	HOXA10-HOXA9 HOXA9
chr7	27203139	27203139	G	A	rs7810502	N	4.22222424124e-13	0.63139					ncRNA	HOXA10-HOXA9
chr7	27240015	27240023	AGGCGGCCC	AGGGCGGCCC		N	0.415506571531						upstream	HOTTIP HOXA13
chr7	31003423	31003423	C	T	rs2302019	N	5.44722115592e-06	0.58107					upstream	GHRHR							growth hormone releasing hormone receptor	NTERA-2	cerebral cortex
chr7	32982559	32982559	T	C	rs3750077	N	0.275846779346	0.548522					ncRNA	RP9P
chr7	37924737	37924737	T	G	rs1530822	N	1.68203973772e-06	0.553315					intronic	NME8							NME/NM23 family member 8	U-937	bone marrow
chr7	38279663	38279663	T	C	rs1053771	N	2.59792477664e-06						intergenic
chr7	38468695	38468695	C	T	rs2392572	N	3.90334076172e-09	0.899561					intronic	AMPH							amphiphysin	U-138-MG	cerebral cortex
chr7	39649055	39649055	A	G	rs4723883	N	0.0872747525573	0.260783					intronic	YAE1D1								NTERA-2	testis
chr7	42960618	42960618	C	A	rs591875	N	2.46056219844e-09	0.851837					intronic	PSMA2							proteasome (prosome, macropain) subunit, alpha type 2	NB-4	liver
chr7	43540782	43540810	CTTTTTTTTTTTTTTTTTTTTCATATGCA	CTTTTTTTTTTTTTTTTCATATGCA		N	0.00110069324728						intronic	HECW1							HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1	A-549	kidney
chr7	43540782	43540810	CTTTTTTTTTTTTTTTTTTTTCATATGCA	CTTTTTTTTTTTTTTTTTCATATGCA		N	0.000221249472816						intronic	HECW1							HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1	A-549	kidney
chr7	43847709	43847709	G	A	rs589570	N	4.51261650269e-09	0.478435					downstream	BLVRA								RPMI-8226	spleen
chr7	43916727	43916727	T	G	rs2232108	N	5.51608763999e-07	0.510982	D	N	N	N	nonsynonymous SNV	URGCP	NM_001290075 NM_001290076 NM_001077664 NM_017920 NM_001077663	6,7,6,5,6	2206,2206,2206,2308,2335	736,736,736,770,779	M=>L,M=>L,M=>L,M=>L,M=>L		upregulator of cell proliferation	U-266/84	adrenal gland
chr7	44084292	44084292	C	G	rs4430012	N	0.486632794142	0.448682					5-UTR	DBNL	NM_001014436 NM_001122956 NM_014063 NM_001284313 NM_001284315						drebrin-like	WM-115	esophagus
chr7	44147485	44147485	C	A	rs2537188	N	5.98847336164e-08	0.357428	N	N	N	N	nonsynonymous SNV	AEBP1	NM_001129	5	817	273	P=>T		AE binding protein 1	WM-115	gallbladder
chr7	44749426	44749426	C	T	rs1076274	N	6.03993503319e-05	0.249401					downstream	OGDH							oxoglutarate dehydrogenase (lipoamide)	RPMI-8226	heart muscle
chr7	44839997	44840023	CTTTTTTTTTTTTTTTCTTTTCTCAGA	CTTTTTTTTTTTTTTTTCTTTTCTCAGA		N	0.45138502121						intronic	PPIA								NB-4	lymph node
chr7	44959936	44959936	A	G	rs4724334	N	5.77013659075e-10	0.559505					intergenic
chr7	45119515	45119515	A	G	rs111979067	N	7.44714556689e-09	0.0652955					downstream	NACAD							NAC alpha domain containing	SCLC-21H	cerebral cortex
chr7	45119946	45119946	T	G	rs35199312	N	4.66896313278e-12	0.219249					downstream	NACAD							NAC alpha domain containing	SCLC-21H	cerebral cortex
chr7	45122464	45122464	A	C	rs10243185	N	2.95360402802e-09	0.485623	N	N	N	N	nonsynonymous SNV	NACAD	NM_001146334	2	3315	1105	D=>E		NAC alpha domain containing	SCLC-21H	cerebral cortex
chr7	45124008	45124008	T	C	rs7777835	N	6.51299487799e-05	0.636581	N	N	N	N	nonsynonymous SNV	NACAD	NM_001146334	2	1771	591	K=>E		NAC alpha domain containing	SCLC-21H	cerebral cortex
chr7	45148667	45148667	G	A	rs2304693	N	3.11826688915e-08	0.126398	N	N	N	N	nonsynonymous SNV	TBRG4	NM_001261834 NM_004749 NM_030900 NM_199122	2,2,2,2	203,170,170,170	68,57,57,57	P=>L,P=>L,P=>L,P=>L		transforming growth factor beta regulated gene 4	K-562	appendix
chr7	45854001	45854001	C	T	rs112123244	N	1.54922181537e-05	0.120807					intergenic
chr7	47317510	47317510	G	A	rs3750163	N	4.54099199487e-06	0.28155					3-UTR	TNS3	NM_022748						tensin 3	A-549	placenta
chr7	47835027	47835027	A	G	rs9719534	N	5.79933683298e-08	0.665335					nonsynonymous SNV	C7orf69	NM_025031	1	94	32	K=>E			U-138-MG	adipose tissue
chr7	47988552	47988552	T	C	rs2708860	N	1.20668952608e-09	0.850839					upstream	PKD1L1							polycystic kidney disease 1 like 1	U-266/70	testis
chr7	48315796	48315796	C	A	rs1880736	N	7.51989759351e-09	0.812899	N	N	N	N	nonsynonymous SNV	ABCA13	NM_152701	17	6533	2178	A=>E		ATP-binding cassette, sub-family A (ABC1), member 13	U-2-OS	bone marrow
chr7	48318811	48318811	C	T	rs2222648	N	4.42744720885e-08	0.852236	N	N	N	N	nonsynonymous SNV	ABCA13	NM_152701	18	8020	2674	R=>W		ATP-binding cassette, sub-family A (ABC1), member 13	U-2-OS	bone marrow
chr7	48887548	48887548	G	C	rs4404869	N	3.83120914194e-06	0.58766					intergenic
chr7	48964209	48964217	TGGGCCGCC	TGGCCGCC		N	0.0209951922297						ncRNA	CDC14C
chr7	48965427	48965427	A	G	rs388312	N	4.84271879486e-07	0.529553					ncRNA	CDC14C
chr7	49815390	49815390	C	G	rs769604	N	0.486632794142	0.494209	N	N	N	N	nonsynonymous SNV	VWC2	NM_198570	2	359,120	120	A=>G		von Willebrand factor C domain containing 2	U-266/70	heart muscle
chr7	50023122	50023122	C	T	rs988392	N	2.907969332e-08	0.783347					intronic	ZPBP							zona pellucida binding protein	HDLM-2	testis
chr7	50156916	50156916	C	G	rs6959792	N	3.44663995122e-08	0.844649					intronic	C7orf72								U-698	testis
chr7	50173777	50173777	A	G	rs998928	N	1.3766353959e-06	0.586262	N	N	N		nonsynonymous SNV	C7orf72	NM_001161834	4	802,268	268	T=>A			U-698	testis
chr7	51083569	51083569	G	T	rs7804555	N	7.14729253559e-08	0.453474					downstream	COBL							cordon-bleu	HeLa	salivary gland
chr7	51085127	51085133	ATTTGGC	ATTTTGGC		N	0.00112780020572						3-UTR	COBL	NM_001287436 NM_015198						cordon-bleu	HeLa	salivary gland
chr7	5156472	5156472	C	A	rs4400288	N	3.96637324229e-06	0.302915					intergenic
chr7	5257490	5257490	T	C	rs7791896	N	7.4203853782e-14	0.960463					intronic	WIPI2							WD repeat domain, phosphoinositide interacting 2	U-2-OS	testis
chr7	53071722	53071724	TGC	TGGC		N	0.00346326548606						intergenic
chr7	53931742	53931742	A	G	rs12532893	N	6.23637379249e-06	0.432109					intergenic
chr7	55412661	55412682	GCGCCCGCCCGCCTCTCCTGCC	GCGCCCGCCCGCCTCTCCTGCCGCCCGCCCGCCTCTCCTGCC		N	0.486632794142						intergenic
chr7	55658927	55658927	T	C	rs62455009	N	0.000312147982186	0.309505					intergenic
chr7	55659693	55659693	G	A	rs11974462	N	0.000111845110951	0.197484					intergenic
chr7	55659698	55659715	ACCCCCCCTCTTTTCCTG	ACCCCCCTCTTTTCCTG		N	0.00918830931187						intergenic
chr7	55659732	55659732	T	G	rs7798941	N	2.76126513654e-07	0.816693					intergenic
chr7	55724445	55724445	A	C	rs9656709	N	1.42323087857e-05	0.414337					intergenic
chr7	56122058	56122058	A	T	rs6593297	N	2.32399434026e-05	0.642372					intronic	CCT6A							chaperonin containing Tcp1, subunit 6a (zeta)	A-431	appendix
chr7	56443361	56443361	T	G	rs6965270	N	2.93013813213e-09	0.719449					intergenic
chr7	57188016	57188016	A	G	rs11981414	N	6.67953810752e-13	0.321685	N	N	N	N	nonsynonymous SNV	ZNF479	NM_033273	5	1106	369	M=>T			A-431	testis
chr7	57188526	57188526	T	C	rs7805171	N	3.76982055598e-13	0.321286	N	N	N	N	nonsynonymous SNV	ZNF479	NM_033273	5	596	199	H=>R			A-431	testis
chr7	57233554	57233554	G	C	rs34820155	N	5.93840425722e-08	0.230232					ncRNA	GUSBP10
chr7	57473285	57473285	G	C	rs6557577	N	6.76480382822e-08	0.84365					downstream	MIR3147
chr7	57484131	57484131	G	A	rs6557578	N	1.59739474981e-08	0.602636					intergenic
chr7	57485650	57485650	C	T	rs7809672	N	0.00012572221749	0.261981					intergenic
chr7	57710955	57710956	CC	GG		N	0.033300794661						intergenic
chr7	57711076	57711076	T	C	rs377454694	N	0.00608692783862						intergenic
chr7	62809369	62809369	T	C	rs2241015	N	1.76069381297e-08	0.63758					ncRNA	LOC102724738
chr7	63071498	63071498	T	C	rs3857654	N	0.00250526564196						intergenic
chr7	63815621	63815621	G	C	rs603101	N	6.8398850317e-07	0.538938					3-UTR	ZNF736	NM_001170905							AN3-CA	testis
chr7	64498641	64498659	CGCGGCGGCGGCCGCGGCA	CGCGGCGGCGGCGGCGGCGGCGGCGGCCGCGGCA		N	0.486632794142						upstream	CCT6P3
chr7	64727725	64727726	GC	TT		N	0.0242482963949						intergenic
chr7	65228507	65228507	C	T	rs1799103	N	8.9441316959e-05						ncRNA	CCT6P1
chr7	6523396	6523396	C	G	rs12113949	N	0.041035681963	0.796925					intronic	KDELR2							KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2	WM-115	stomach
chr7	6683454	6683454	A	G	rs2253869	N	2.17507658817e-06	0.709665					nonsynonymous SNV	ZNF316	NM_001278559	7	467	156	E=>G
chr7	6692605	6692605	T	C	rs1474419	N	1.51656269765e-08	0.838458					nonsynonymous SNV	ZNF316	NM_001278559	9	1378	460	S=>P
chr7	67235848	67235848	T	C	rs60373586	N	2.44749376321e-09	0.742612					intergenic
chr7	6863474	6863474	C	G	rs2711231	N	0.0309472139925						intronic	CCZ1B								THP-1	skin
chr7	6894849	6894849	G	A	rs10276823	N	3.31698083755e-06	0.858027					intergenic
chr7	6894855	6894855	G	T	rs10276825	N	3.67310985894e-06	0.858027					intergenic
chr7	73279482	73279482	T	C	rs13227841	N	5.02850372452e-10	0.561701	N	N	N	N	nonsynonymous SNV	WBSCR28	NM_182504	2	232	78	W=>R		Williams-Beuren syndrome chromosome region 28 (human)	MCF-7	testis
chr7	73523685	73523685	G	A	rs150865	N	2.84473644641e-09	0.826078					intronic	LIMK1							LIM-domain containing, protein kinase	U-87-MG	cerebral cortex
chr7	73814749	73814749	G	C	rs2522943	N	1.41159812728e-08	0.988818	N	N	N	N	nonsynonymous SNV	CLIP2	NM_003388 NM_032421	15,14	2930,2825	977,942	R=>P,R=>P		CAP-GLY domain containing linker protein 2	HDLM-2	cerebral cortex
chr7	74489486	74489486	T	C	rs6955671	N	0.486632794142	0.467652					nonsynonymous SNV	RCC1L	NM_030798 NM_001281441 NM_148842	1,1,1	88,88,88	30,30,30	R=>G,R=>G,R=>G
chr7	74776225	74776225	G	T	rs34472859	N	0.000313413795084	0.11262					ncRNA	GTF2IP1 PMS2P5
chr7	76828953	76828953	C	T	rs2075761	N	0.000229055935051	0.151757	N	N	N	N	nonsynonymous SNV	FGL2	NM_006682	1	158	53	G=>E			WM-115	spleen
chr7	76889256	76889315	AGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTA	AGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTA		N	0.229392066598						intronic	CCDC146							coiled-coil domain containing 146	NB-4	testis
chr7	77165919	77165919	A	G	rs3763404	N	0.00599025050178	0.365415					upstream	PTPN12							protein tyrosine phosphatase, non-receptor type 12	WM-115	lung
chr7	77584159	77584174	ATTTTTTTTTTTCTAG	ATTTTTTTTTTTTCTAG		D	0.665250003338						intronic	PHTF2							putative homeodomain transcription factor 2	U-138-MG	lymph node
chr7	77708131	77708131	A	G	rs73136595	N	5.33016027475e-05	0.214856					intronic	MAGI2							membrane associated guanylate kinase, WW and PDZ domain containing 2	Karpas-707	cerebral cortex
chr7	79764742	79764742	A	G	rs2465480	N	4.52794984085e-06	0.835064					intronic	GNAI1							guanine nucleotide binding protein (G protein), alpha inhibiting 1	A-549	adipose tissue
chr7	81579832	81579866	TAAAAAAAAAAGAAAAGAACAGAAAAAGAAAAATC	TAAAAAAAAAAAGAAAAGAACAGAAAAAGAAAAATC		N	0.0011714581633						intronic	CACNA2D1							calcium channel, voltage-dependent, alpha2/delta subunit 1	SH-SY5Y	heart muscle
chr7	89964044	89964049	TCCCGA	TCCCCGA		N	0.026404781267						upstream	LOC101927446
chr7	90838708	90838722	GTCTCTCTCTCTCTG	GTCTCTCTCTCTCTCTG		N	0.292998969555						3-UTR	CDK14	NM_001287135 NM_012395 NM_001287136 NM_001287137						cyclin-dependent kinase 14	Karpas-707	cerebral cortex
chr7	91599825	91599825	A	C	rs2188155	N	3.40417900588e-05	0.372404					intronic	AKAP9							A kinase (PRKA) anchor protein (yotiao) 9	MCF-7	colon
chr7	91652178	91652182	AAACT	AAACAACT		N	0.350123465061						nonframeshift substitution	AKAP9	NM_147185 NM_005751	14,14	4003,4003				A kinase (PRKA) anchor protein (yotiao) 9	MCF-7	colon
chr7	91707197	91707197	C	T	rs733957	N	0.0026357343886	0.36242					intronic	AKAP9							A kinase (PRKA) anchor protein (yotiao) 9	MCF-7	colon
chr7	91713016	91713018	TAA	TT		N	0.0603901259601						intronic	AKAP9							A kinase (PRKA) anchor protein (yotiao) 9	MCF-7	colon
chr7	92071302	92071302	C	T	rs38804	N	1.28179702963e-10	0.9998					intergenic
chr7	92129161	92129186	CAAAAAAAAAAAATATGAAAAAGAGC	CAAAAAAAAAAATATGAAAAAGAGC		N	0.16381829977						intronic	PEX1						PEROXISOME BIOGENESIS DISORDER 1A (ZELLWEGER), PEROXISOME BIOGENESIS DISORDER 1B, INCLUDED	peroxisomal biogenesis factor 1	SK-BR-3	skin
chr7	95125050	95125070	CTTTTTTTTTTTTTTTTCAGG	CTTTTTTTTTTTTTTCAGG		N	0.158232197165						nonframeshift substitution	ASB4	NM_016116 NM_145872	2,2	188,188				ankyrin repeat and SOCS box-containing 4	Hep-G2	adrenal gland
chr7	97066787	97066787	C	A	rs78471983	N	0.00014095120423	0.186701					intergenic
chr7	98444287	98444287	C	T	rs1047035	N	4.4689824108e-07	0.208866					3-UTR	TMEM130	NM_001134450 NM_001134451 NM_152913						transmembrane protein 130	SH-SY5Y	cerebral cortex
chr7	98648517	98648531	TGGGGGGGGGGTCTC	TGGGGGGGGGTCTC		N	0.323937445879						intronic	SMURF1							SMAD specific E3 ubiquitin protein ligase 1	U-2197	testis
chr7	99816272	99816275	ACCG	GCCC		D	0.692001461983						intronic	GATS
chr7	99818927	99818927	C	T	rs705867	N	0.486632794142	0.482428					3-UTR	PVRIG	NM_024070							MOLT-4	lymph node
chr7	99819004	99819009	CTCTGT	CT		N	0.486632794142						3-UTR	PVRIG	NM_024070							MOLT-4	lymph node
chr8	10339480	10339480	A	G	rs4476970	N	3.52899363065e-08	0.997404					ncRNA	LINCR-0001
chr8	11189535	11189535	T	C	rs12681991	N	5.62656941838e-06	0.429712	N	N	N	N	nonsynonymous SNV	SLC35G5	NM_054028	1	35,920	307	L=>P			HeLa	testis
chr8	113241088	113241088	T	G	rs1592624	N	7.23543223557e-07	0.71226	N	D	P	N	nonsynonymous SNV	CSMD3	NM_198124 NM_198123 NM_052900	71,70,68	10741,10861,10354	3581,3621,3452	N=>H,N=>H,N=>H		CUB and Sushi multiple domains 3	SCLC-21H	testis
chr8	116635872	116635874	TAG	TAAG		D	0.996821880341						5-UTR	TRPS1	NM_001282903 NM_014112						trichorhinophalangeal syndrome I (human)	SK-BR-3	esophagus
chr8	117799012	117799012	A	G	rs1867840	N	4.25755608546e-09	0.798722					intergenic
chr8	12294359	12294359	G	C	rs2980473	N	0.486632794142	0.757388					upstream	FAM86B2 LOC100506990
chr8	12437086	12437086	A	C	rs632696	N	1.69771581682e-07	0.989217					ncRNA	LOC729732
chr8	12485890	12485890	T	C	rs624361	N	4.52644322024e-09	0.990016					ncRNA	LOC729732
chr8	12516729	12516729	T	G	rs658131	N	1.2159523605e-12	0.95028					ncRNA	LOC729732
chr8	125321494	125321494	G	C	rs35076079	N	0.0005616323906	0.143371					intergenic
chr8	136246261	136246261	G	A	rs1115836	N	9.19494524965e-09	0.792133					upstream	LINC01591
chr8	139096378	139096378	T	G	rs3861782	N	3.35255208483e-06	0.566294					intergenic
chr8	139141428	139141428	C	A	rs6577874	N	4.92006613229e-09	0.879393					downstream	FAM135B							family with sequence similarity 135, member B	RH-30	testis
chr8	141528090	141528090	C	T	rs4961330	N	9.71017698248e-07	0.773363					downstream	CHRAC1								MOLT-4	lymph node
chr8	142217172	142217172	C	T	rs10098385	N	3.49976297942e-11	0.324481					downstream	SLC45A4							solute carrier family 45, member 4	HMC-1	testis
chr8	142220532	142220537	GAAAGT	GAAGT		D	0.853348433971						3-UTR	SLC45A4	NM_001080431 NM_001286646						solute carrier family 45, member 4	HMC-1	testis
chr8	142443150	142443150	T	C	rs7823705	N	1.82284082939e-07	0.55611					downstream	MROH5 PTP4A3
chr8	142443841	142443841	A	C	rs6578182	N	5.19186213119e-12	0.516174					downstream	MROH5
chr8	142517222	142517222	A	G	rs2748421	N	1.56195505951e-06	0.368211					exonic	MROH5
chr8	143603318	143603318	C	T	rs7462471	N	1.02533050494e-07	0.547724					intronic	ADGRB1
chr8	143653753	143653753	T	G	rs7386652	N	2.17270368807e-07	0.63099					intergenic
chr8	143722537	143722537	C	T	rs6984406	N	6.91464774327e-10	0.509185					downstream	LOC101928087
chr8	143743611	143743611	G	A	rs2976400	N	8.32489133185e-10	0.492212					3-UTR	JRK	NM_003724
chr8	144391452	144391452	G	A	rs11136285	N	8.14193754195e-07	0.615615					downstream	TOP1MT							DNA topoisomerase 1, mitochondrial	MOLT-4	ovary
chr8	144391728	144391728	A	G	rs7386475	N	5.75092751198e-11	0.584665					intronic	TOP1MT							DNA topoisomerase 1, mitochondrial	MOLT-4	ovary
chr8	144391924	144391925	CT	TC		N	0.000437081005657						intronic	TOP1MT							DNA topoisomerase 1, mitochondrial	MOLT-4	ovary
chr8	144399885	144399886	AG	CT		N	0.00581039953977						intronic	TOP1MT							DNA topoisomerase 1, mitochondrial	MOLT-4	ovary
chr8	144649541	144649550	GCCCCGGGCA	GCCCCCGGGCG		N	0.486632794142						frameshift substitution	MROH6	NM_001100878	14	2019					SK-BR-3	bone marrow
chr8	144649541	144649550	GCCCCGGGCA	GCCCCGGGCG		N	0.486632794142						nonframeshift substitution	MROH6	NM_001100878	14	2019					SK-BR-3	bone marrow
chr8	144676098	144676098	A	C	rs1057556	N	5.1706177534e-11	0.73742					5-UTR	EEF1D	NM_001130055						eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)	U-2-OS	ovary
chr8	144681777	144681777	G	T	rs10282929	N	1.44145251291e-09	0.59984	N	N	N	N	nonsynonymous SNV	TIGD5	NM_032862	1	1704	568	M=>I			PC-3	spleen
chr8	144686512	144686512	G	A	rs755217	N	3.7582569945e-08	0.242412					3-UTR	PYCRL	NM_023078						pyrroline-5-carboxylate reductase-like	PC-3	salivary gland
chr8	145004546	145004546	G	A	rs11780911	N	3.7351604476e-08	0.571885					intronic	PLEC							plectin	PC-3	skin
chr8	145063412	145063412	T	C	rs11784833	N	3.86550347287e-09	0.208267					upstream	GRINA								MCF-7	adipose tissue
chr8	145167922	145167922	G	C	rs4977194	N	1.43555634047e-09	0.872404					intronic	WDR97
chr8	145223191	145223191	G	A	rs6982878	N	3.92951730183e-12	0.844449					intronic	MROH1								PC-3	thyroid gland
chr8	145741702	145741702	C	G	rs4244612	N	0.00247919908725	0.447684		N	N		nonsynonymous SNV	RECQL4	NM_004260	5	801	267	E=>D		RecQ protein-like 4	MCF-7	bone marrow
chr8	145750138	145750138	T	C	rs2721138	N	0.00387325603515	0.558706					3-UTR	LRRC14	NM_001272036 NM_014665						leucine rich repeat containing 14	U-2-OS	prostate
chr8	145752467	145752467	A	T	rs2721142	N	0.486632794142	0.443091					3-UTR	C8orf82	NM_001001795							PC-3	prostate
chr8	146221823	146221823	A	T	rs2978409	N	3.39534764748e-08	1					ncRNA	TMED10P1
chr8	1677399	1677399	A	C	rs2977181	N	5.22332666009e-09	0.837061					intergenic
chr8	16850416	16850416	A	G	rs2640901	N	3.79589124577e-08	0.953474					3-UTR	FGF20	NM_019851							CAPAN-2	ovary
chr8	20231244	20231288	AGAGGAGGAGGAAGAAGAGGAGGAGAGAAAGGAGGAGGAAGAAAA	AGAGGAGGAAGAAGAGGAGGAAGAAGAGGAGAGAAAGGAGGAGGAAGAAAA		N	0.0338137149811						intergenic
chr8	21940121	21940121	T	G	rs1872224	N	3.57628859859e-09	0.897364					downstream	DMTN								HEL	cerebral cortex
chr8	21940818	21940818	G	A	rs6557784	N	5.3149510677e-06	0.738618					downstream	DMTN								HEL	cerebral cortex
chr8	26722992	26723003	GGTTGGGTAGCG	GG		N	0.268242955208						5-UTR	ADRA1A	NM_001322503 NM_033303 NM_001322502 NM_033302 NM_033304 NM_000680 NM_001322504						adrenergic receptor, alpha 1a	U-2-OS	liver
chr8	26723006	26723017	GCGCTACAGGTT	TCT		N	0.0268783215433						5-UTR	ADRA1A	NM_001322503 NM_033303 NM_001322502 NM_033302 NM_033304 NM_000680 NM_001322504						adrenergic receptor, alpha 1a	U-2-OS	liver
chr8	30623996	30623996	T	C	rs2956016	N	5.22957996907e-08	0.979433					3-UTR	UBXN8	NM_001282189 NM_001282199 NM_005671						UBX domain protein 8
chr8	36134848	36134848	C	T	rs55884086	N	3.59092496183e-07	0.697883					intergenic
chr8	39331447	39331447	C	T	rs62510460	N	0.00023288858938	0.264377					ncRNA	ADAM3A
chr8	40259573	40259573	C	G	rs210884	N	5.06302276335e-05	0.267971					intergenic
chr8	40259598	40259598	C	T	rs57480539	N	0.000107727129944	0.217652					intergenic
chr8	40259876	40259876	C	T	rs12679419	N	0.000222130445763	0.216054					intergenic
chr8	40259958	40259958	G	A	rs35401145	N	0.000178851536475	0.228634					intergenic
chr8	41386620	41386620	G	T	rs3808638	N	0.486632794142	0.101038					upstream	GINS4							GINS complex subunit 4 (Sld5 homolog)	WM-115	lymph node
chr8	41508168	41508168	A	C	rs6981607	N	3.53572613676e-05	0.589457					intergenic
chr8	43234194	43234194	T	C	rs2020394	N	2.17132836156e-07	0.821486					intergenic
chr8	47996957	47996957	C	T	rs1846505	N	1.81874952432e-06	0.648762					intergenic
chr8	55435931	55435931	A	G	rs7840175	N	2.09796985473e-06	0.679912					intergenic
chr8	57135889	57135889	T	C	rs6984782	N	3.50338741555e-05	0.214257					intergenic
chr8	6699486	6699486	C	G	rs2951830	N	1.02658441392e-06	0.327077					ncRNA	GS1-24F4.2
chr8	70041707	70041707	T	C	rs10090741	N	3.01085614773e-11	0.890176					intergenic
chr8	72691504	72691504	C	T	rs13281926	N	3.67712971183e-07	0.907548					intergenic
chr8	81262544	81262544	C	T	rs62517192	N	5.18492424817e-06	0.4375					intergenic
chr8	8997975	8997975	G	A	rs13264959	D	0.976458013058	0.0177716					3-UTR	PPP1R3B	NM_024607 NM_001201329						protein phosphatase 1, regulatory (inhibitor) subunit 3B	BEWO	liver
chr8	90424729	90424729	G	A	rs11777120	N	5.25322785272e-10	0.988818					intergenic
chr8	96047806	96047826	TAAAAAAAAAAAAATACCACT	TAAAAAAAAAAAAAATACCACT		D	0.997671425343						intronic	NDUFAF6							NADH dehydrogenase (ubiquinone) complex I, assembly factor 6	U-698	thyroid gland
chr8	97173484	97173484	T	C	rs2245091	N	0.000966396473814	0.271965					upstream	GDF6								BEWO	placenta
chr8	98787930	98787950	GTGCTTGGAGCTCCAGCAGCT	GTGCTTGGAGCTCCAGCAGCTGCTTGGAGCTCCAGCAGCT		N	0.486632794142						5-UTR	LAPTM4B	NM_018407						lysosomal-associated protein transmembrane 4B	HEL	heart muscle
chr9	100087345	100087345	A	G	rs3747496	N	1.74523584473e-09	0.598043					synonymous SNV	CCDC180	NM_020893	14	1548	516	S=>S			U-266/70	testis
chr9	100092968	100092987	AGAGGAGGAGGAGGAGAAGC	AGAGGAGGAGGAGGAGGAGGAGAAGC		N	0.000660509162117						nonframeshift substitution	CCDC180	NM_020893	18	2325					U-266/70	testis
chr9	100132194	100132194	C	A	rs2169456	N	8.01962514174e-08	0.579673					ncRNA	LOC100499484-C9ORF174
chr9	100843417	100843417	A	G	rs4237190	N	1.26032102798e-06	0.653554					intronic	NANS								SK-BR-3	colon
chr9	101748234	101748234	G	A	rs2075662	N	5.83659448239e-06	0.244808	N	N	N	N	nonsynonymous SNV	COL15A1	NM_001855	3	488	163	R=>H		collagen, type XV, alpha 1	U-2197	placenta
chr9	101832263	101832280	GTTTTTTTTTTTTACTAC	GGTTTTTTTTTTTTTACTAC		N	0.121702454984						3-UTR	COL15A1	NM_001855						collagen, type XV, alpha 1	U-2197	placenta
chr9	104161154	104161154	C	A	rs2253258	N	0.486632794142	0.88119					5-UTR	ZNF189	NM_001278231 NM_001278232 NM_001278240 NM_003452 NM_197977							RH-30	gallbladder
chr9	106761709	106761709	A	C	rs628605	N	1.58181814869e-10	0.98722					upstream	LOC101928523
chr9	111929420	111929421	CG	GC		N	0.486632794142						exonic	FRRS1L
chr9	115866704	115866704	C	G	rs6477985	N	1.91434210706e-07	0.839657					downstream	FAM225B
chr9	115913145	115913145	T	C	rs4602967	N	0.0374681763351	0.777356					upstream	SLC31A2							solute carrier family 31, member 2	HaCaT	salivary gland
chr9	116192592	116192592	A	G	rs818715	N	1.26381308196e-10	0.996805					downstream	C9orf43								SiHa	testis
chr9	123150453	123150453	A	G	rs4836819	N	1.06795550181e-08	0.682109					downstream	CDK5RAP2							CDK5 regulatory subunit associated protein 2	RH-30	testis
chr9	127956061	127956061	A	G	rs12238347	N	0.000450677180197	0.0473243					intergenic
chr9	130668278	130668278	T	A	rs2094333	N	9.80363217635e-15	0.759984					upstream	ST6GALNAC6								HDLM-2	colon
chr9	130742834	130742834	T	G	rs113481265	N	0.16609582305	0.751797					upstream	FAM102A							family with sequence similarity 102, member A	A-549	stomach
chr9	132805814	132805814	T	G	rs7037717	N	0.0744350254536	0.965855					upstream	FNBP1							formin binding protein 1	MOLT-4	lymph node
chr9	132806941	132806941	A	G	rs2417174	N	2.03827039513e-06	0.963858					intergenic
chr9	132887249	132887268	TAAAAAAAAAAAAAATCCTC	TAAAAAAAAAAAAATCCTC		N	0.132149532437						intronic	GPR107							G protein-coupled receptor 107	HaCaT	thyroid gland
chr9	135972557	135972557	A	G	rs581854	N	5.5169881108e-08	0.830272					downstream	RALGDS							ral guanine nucleotide dissociation stimulator	HDLM-2	skin
chr9	136080416	136080416	A	G	rs9411462	N	3.97679241967e-12	0.980831					downstream	OBP2B							odorant binding protein 2B	RPMI-8226	testis
chr9	136208193	136208193	T	C	rs622415	N	4.00153608165e-12	0.916733					3-UTR	MED22	NM_133640 NM_181491						mediator complex subunit 22	REH	ovary
chr9	137735232	137735241	GCTATCTATC	GCTATC		N	0.343778967857						ncRNA	LOC101448202
chr9	138853386	138853386	T	C	rs6537922	N	0.486632794142	0.986022					upstream	UBAC1							ubiquitin associated domain containing 1	K-562	bone marrow
chr9	139622866	139622866	A	G	rs9411222	N	0.486632794142	0.756589					upstream	SNHG7
chr9	139776194	139776194	G	C	rs3739943	N	8.08198877369e-22	0.772963					intergenic
chr9	139870090	139870090	C	T	rs3814500	N	9.99101111088e-14	0.714257					intergenic
chr9	140004959	140004959	C	T	rs6420281	N	7.33652097407e-11	0.804113					downstream	DPP7							dipeptidylpeptidase 7	RPMI-8226	spleen
chr9	140085210	140085210	G	C	rs67506437	N	7.1343530042e-12	0.266374					downstream	SSNA1 TPRN
chr9	140144732	140144732	A	G	rs1133439	N	6.53079312851e-10	0.852835					ncRNA	C9orf173-AS1
chr9	14612188	14612188	T	G	rs1143025	N	2.58709842456e-05	0.315695					3-UTR	ZDHHC21	NM_178566							HEL	esophagus
chr9	16412718	16412765	GGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAC	GGAGAGAGAGAGAGAGAGAGAC		N	0.00384630542248						3-UTR	BNC2	NM_017637 NM_001317940 NM_001317939						basonuclin 2	Karpas-707	ovary
chr9	20332699	20332699	A	G	rs178607	N	1.95185663188e-08	0.994209					intergenic
chr9	21032203	21032203	A	G	rs10738576	N	5.21714290692e-13	0.974641					upstream	HACD4
chr9	27297656	27297656	G	A	rs10116338	N	9.13613629194e-09	0.832268					upstream	EQTN							equatorin, sperm acrosome associated	BEWO	testis
chr9	33103427	33103427	C	G	rs546688	N	0.000231678917771	0.433506					intergenic
chr9	34366134	34366134	A	C	rs4879779	N	6.18591457169e-07	0.773762					downstream	KIAA1161								SK-BR-3	duodenum
chr9	37753709	37753709	T	C	rs7847996	N	0.0176478195935	0.995807					upstream	TRMT10B							tRNA methyltransferase 10 homolog B (S. cerevisiae)	HL-60	ovary
chr9	38407090	38407091	CT	TC		N	4.65632666646e-07						3-UTR	IGFBPL1	NM_001007563						insulin-like growth factor binding protein-like 1	SCLC-21H	thyroid gland
chr9	38620366	38620386	TCCGCGATCTCCCCCGCAACC	TC		N	0.319996476173						upstream	ANKRD18A FAM201A
chr9	38620366	38620386	TCCGCGATCTCCCCCGCAACC	TCCGCGATCCCCCCCGCAACC		N	0.217867955565						upstream	ANKRD18A FAM201A
chr9	42438220	42438220	T	C	rs1111028	N	0.000756075023673						intergenic
chr9	43066620	43066620	G	T	rs4929402	N	8.3874372649e-05						intergenic
chr9	43066801	43066801	G	A	rs2218955	N	0.00195105781313						intergenic
chr9	45363394	45363394	T	G	rs4913217	N	1.81219002116e-05	0.599241					intergenic
chr9	45729172	45729172	G	T	rs62556706	D	0.999886155128						intergenic
chr9	45729178	45729178	T	A	rs62556707	D	0.999664902687						intergenic
chr9	45729226	45729226	G	A	rs62556708	D	0.999405384064						intergenic
chr9	5720172	5720172	C	G	rs10758700	N	2.00603736289e-07	0.495208					intronic	RIC1
chr9	67335129	67335129	T	C	rs4929654	N	2.18325430978e-06	0.986422					downstream	LOC102724580
chr9	67791288	67791288	G	C	rs36140591	D	1.0						intergenic
chr9	67791423	67791423	C	G	rs112591433	D	1.0						intergenic
chr9	68410520	68410526	CGTCTGT	TGTCTGTGT		N	0.000456925277831						intergenic
chr9	68412896	68412897	CT	CC		D	0.828700363636						intergenic
chr9	68412896	68412897	CT	TC		D	0.828700363636						intergenic
chr9	68413415	68413418	TGCA	AGCG		N	0.486632794142						intergenic
chr9	68413415	68413418	TGCA	CGCG		N	0.486632794142						intergenic
chr9	68415064	68415065	TC	CA		D	1.0						upstream,downstream	MIR4477B;MIR4477A
chr9	68415064	68415065	TC	TA		D	1.0						upstream,downstream	MIR4477B;MIR4477A
chr9	68415838	68415838	A	G	rs79907211	D	1.0						upstream,downstream	MIR4477A;MIR4477B
chr9	68415937	68415945	GTGGTAAGT	TTCGTGAGG		D	1.0						upstream,downstream	MIR4477A;MIR4477B
chr9	68415937	68415945	GTGGTAAGT	TTGGTAAGG		D	1.0						upstream,downstream	MIR4477A;MIR4477B
chr9	68416029	68416036	ATAACTAA	CTAATTAA		D	1.0						upstream,downstream	MIR4477A;MIR4477B
chr9	68416029	68416036	ATAACTAA	CTAATTAT		D	1.0						upstream,downstream	MIR4477A;MIR4477B
chr9	69180084	69180084	T	C		N	0.013135981746						ncRNA	LOC440896
chr9	69451885	69451885	T	A	rs4143374	N	0.0019093042938						intergenic
chr9	71629117	71629117	C	T	rs12555211	N	5.49346350454e-06	0.324681					upstream	PRKACG								A-431	testis
chr9	72374969	72374969	T	C	rs2252130	N	0.486632794142	0.891573					upstream	PTAR1							protein prenyltransferase alpha subunit repeat containing 1	WM-115	bone marrow
chr9	73736531	73736531	C	T	rs59612871	N	6.69914061291e-06	0.0942492					upstream	TRPM3							transient receptor potential cation channel, subfamily M, member 3	TIME	kidney
chr9	74980199	74980223	CCGGCGGCGGCGGCGGCGGCGGGGA	CCGGCGGCGGCGGCGGCGGGGA		N	0.486632794142						upstream	ZFAND5							zinc finger, AN1-type domain 5	HDLM-2	adipose tissue
chr9	77643519	77643519	C	G	rs719507	N	0.139269277453	0.746805					upstream	CARNMT1
chr9	78808329	78808337	GAAAAAAGC	GAAAAAAAAAAGC		N	0.117762081325						3-UTR	PCSK5	NM_006200						proprotein convertase subtilisin/kexin type 5	HaCaT	small intestine
chr9	79608272	79608272	C	T	rs10781405	N	4.59443690488e-05	0.397564					intergenic
chr9	85817037	85817059	CAAAAAAAAAAGAAAAACCACCC	CAAAAAAAAAAAGAAAAACCACCC		N	0.0052143689245						intergenic
chr9	88420602	88420606	TCCTA	GCCTC		N	0.103743523359						upstream	LOC389765
chr9	88420602	88420606	TCCTA	TCCTC		N	0.103743523359						upstream	LOC389765
chr9	92219921	92219921	A	C	rs3138499	N	0.486632794142	0.410743					upstream	GADD45G								HDLM-2	liver
chr9	93345047	93345047	A	G	rs689720	N	1.41194549386e-08	0.68111					upstream	LINC01501
chr9	93837853	93837853	G	A	rs177039	N	3.53088435077e-05	0.452875					upstream	LOC100129316
chr9	95570876	95570876	C	T	rs1830693	N	0.000170055529452	0.969649					upstream	LOC101929748
chr9	95858077	95858077	C	G	rs115317746	N	0.0447296276689						upstream	CARD19
chr9	95874428	95874428	G	A	rs10821071	N	0.000278444291325	0.452276					intronic	CARD19
chr9	98691137	98691137	T	C	rs2274654	N	0.173482909799	0.227037	D	D	D	N	nonsynonymous SNV	ERCC6L2	NM_001010895 NM_020207	11,11	1775,1775	592,592	V=>A,V=>A			RH-30	thyroid gland
chr9	99122511	99122532	TAAAAAAAAAAGAAGAAATATT	TAAAAAAAAAAAGAAGAAATATT		N	0.444748193026						intronic	SLC35D2							solute carrier family 35, member D2	Hep-G2	small intestine
chr9	99154525	99154525	C	T	rs35592391	N	0.281735479832	0.0219649					intronic	ZNF367								RH-30	bone marrow