Detail Information of SG000020


General information  

SG000020
NPAS2
MOP4, PASD4, bHLHe9
Homo sapiens
9606
ENSG00000170485
ENSP00000338283  ENSP00000397595  ENSP00000388528  ENSP00000395265  
ENSP00000392125  ENSP00000393396  

Neuronal PAS domain protein 2 [Homo sapiens (human)]

SpeciesUniprotGene stable IDGene Name
Mus musculusP97460MGI:109232Npas2
Rattus norvegicusF1MAG2RGD:1309681Npas2
Gallus gallusQ5ZQU2Gene:NPAS2NPAS2
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Reviewed functional gene

Functional information  

meiotic    
Spermatid    

1. Abstract
OBJECTIVE PMID: [25956372]  

Ramasamy, R., Bakircioglu, M. E., Cengiz, C., Karaca, E., Scovell, J., Jhangiani, S. N., Akdemir, Z. C., Bainbridge, M., Yu, Y., Huff, C., Gibbs, R. A., Lupski, J. R. and Lamb, D. J. (2015) Whole-exome sequencing identifies novel homozygous mutation in NPAS2 in family with nonobstructive azoospermia. Fertil Steril 104(2): 286-91. PMID: [25956372]

Neuronal PAS 2 domain (NPAS2) protein is expressed in the brain, more specifically the cerebral cortex, testis, and the prostate in both mouse and human. This expression data is consistent with the role of NPAS2 function in circadian rhythm, fertility and suggest NPAS2 as one of the potential causative genes for NOA
 
ReactomeID: R-HSA-400253
Circadian Clock
603347
N/A

Expression and location  

Expressed highest in esophagus
Expressed highest in spermatogonium
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Nucleus

Mutation  

1000G (Phase 3): 4535   ESP6500 (SI-V2): 188   ExAC (r0.3.1): 831   dbSNP(Build 147): 8962

Chinese health control (254): 13  European health control (283): 5   Chinese patients (168):  

Gene Name: NPAS2   DNMR-average: 0.0000402625    DNMR-SC: 0.0000419342

Other information  

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Sub-OntologiesAccessionTermEvidence
Biological ProcessGO:0006351transcription, DNA-templatedIEA
Biological ProcessGO:0006355regulation of transcription, DNA-templatedIEA
Biological ProcessGO:0006974cellular response to DNA damage stimulusIEA
Biological ProcessGO:0007417central nervous system developmentTAS
Biological ProcessGO:0007623circadian rhythmTAS
Biological ProcessGO:0019216regulation of lipid metabolic processTAS
Biological ProcessGO:0032922circadian regulation of gene expressionISS
Biological ProcessGO:0045739positive regulation of DNA repairIMP
Biological ProcessGO:0045893positive regulation of transcription, DNA-templatedIDA
Biological ProcessGO:0045944positive regulation of transcription from RNA polymerase II promoterIGI
Biological ProcessGO:0048511rhythmic processIEA
Biological ProcessGO:0051775response to redox stateIDA
Biological ProcessGO:0060548negative regulation of cell deathIMP
Biological ProcessGO:2001020regulation of response to DNA damage stimulusIMP
Cellular ComponentGO:0005634nucleusIEA
Cellular ComponentGO:0005654nucleoplasmTAS
Cellular ComponentGO:0005667transcription factor complexIPI
Cellular ComponentGO:0005737cytoplasmIEA
Cellular ComponentGO:0005829cytosolTAS
Molecular FunctionGO:0001047core promoter bindingISS
Molecular FunctionGO:0003677DNA bindingIPI
Molecular FunctionGO:0003700transcription factor activity, sequence-specific DNA bindingTAS
Molecular FunctionGO:0005515protein bindingIPI
Molecular FunctionGO:0046872metal ion bindingIEA
Molecular FunctionGO:0046983protein dimerization activityIEA
Molecular FunctionGO:0051879Hsp90 protein bindingIDA
Protein AGene name AProtein BGene name BEvidence
ENSMUSP00000054719Npas2ENSMUSP00000055919Csnk2a2experimental
ENSMUSP00000054719Npas2ENSMUSP00000056226predicted
ENSMUSP00000054719Npas2ENSMUSP00000056464Rnf112predicted
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Q99743