Detail Information of SG000239


General information  

SG000239
Upf2
Mus musculus
10090
ENSMUSG00000043241
ENSMUSP00000058375  ENSMUSP00000119348  

UPF2 regulator of nonsense transcripts homolog (yeast) [Mus musculus (house mouse)]

SpeciesUniprotGene stable IDGene Name
Rattus norvegicusD3ZT03RGD:1309178Upf2
Gallus gallusE1C0M6Ensembl:ENSGALG00000006694-
Caenorhabditis elegansC2BR97WormBase:WBGene00004881smg-3
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Reviewed functional gene

Functional information  

meiotic    
Sertoli cell    

1. Abstract
Nonsense-mediated mRNA decay (NMD) represents a highly conserved RNA surveillance mechanism through which mRNA transcripts bearing premature termination codons (PTCs) are selectively degraded to maintain transcriptomic fidelity in the cell. Numerous in ... PMID: [25503407]  

Bao, J., Tang, C., Yuan, S., Porse, B. T. and Yan, W. (2015) UPF2, a nonsense-mediated mRNA decay factor, is required for prepubertal Sertoli cell development and male fertility by ensuring fidelity of the transcriptome. Development 142(2): 352-62. PMID: [25503407]

Bao, J., Tang, C., Yuan, S., Porse, B. T. and Yan, W. (2015) UPF2, a nonsense-mediated mRNA decay factor, is required for prepubertal Sertoli cell development and male fertility by ensuring fidelity of the transcriptome. Development 142(2): 352-62. PMID: [25503407]

Bao, J., Tang, C., Yuan, S., Porse, B. T. and Yan, W. (2015) UPF2, a nonsense-mediated mRNA decay factor, is required for prepubertal Sertoli cell development and male fertility by ensuring fidelity of the transcriptome. Development 142(2): 352-62. PMID: [25503407]

Bao, J., Tang, C., Yuan, S., Porse, B. T. and Yan, W. (2015) UPF2, a nonsense-mediated mRNA decay factor, is required for prepubertal Sertoli cell development and male fertility by ensuring fidelity of the transcriptome. Development 142(2): 352-62. PMID: [25503407]

Bao, J., Tang, C., Yuan, S., Porse, B. T. and Yan, W. (2015) UPF2, a nonsense-mediated mRNA decay factor, is required for prepubertal Sertoli cell development and male fertility by ensuring fidelity of the transcriptome. Development 142(2): 352-62. PMID: [25503407]

Bao, J., Tang, C., Yuan, S., Porse, B. T. and Yan, W. (2015) UPF2, a nonsense-mediated mRNA decay factor, is required for prepubertal Sertoli cell development and male fertility by ensuring fidelity of the transcriptome. Development 142(2): 352-62. PMID: [25503407]

UPF2, a nonsense-mediated mRNA decay factor, is required for prepubertal Sertoli cell development and male fertility by ensuring fidelity of the transcriptome.Ablation of Upf2, in murine embryonic Sertoli cells (SCs) leads to severe testicular atrophy and male sterility owing to rapid depletion of both SCs and germ cells during prepubertal testicular development
 
ReactomeID: R-MMU-975957
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)
N/A

Expression and location  

Expressed highest in testis
Expressed highest in spermatocyte
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-

Mutation in human orthology  

1000G (Phase 3): 3842   ESP6500 (SI-V2): 179   ExAC (r0.3.1): 966   dbSNP(Build 147): 7939

Chinese health control (254): 5  European health control (283): 2   Chinese patients (168):  

Gene NameDNMR-averageDNMR-SC
UPF20.0000474950.0000477401

Other information  

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Sub-OntologiesAccessionTermEvidence
Biological ProcessGO:0000184nuclear-transcribed mRNA catabolic process, nonsense-mediated decayIEA
Biological ProcessGO:0001889liver developmentIMP
Biological ProcessGO:0006986response to unfolded proteinISO
Biological ProcessGO:0031100animal organ regenerationIMP
Cellular ComponentGO:0000932P-bodyIEA
Cellular ComponentGO:0005634nucleusIEA
Cellular ComponentGO:0005737cytoplasmIEA
Cellular ComponentGO:0005829cytosolIEA
Cellular ComponentGO:0005844polysomeIBA
Cellular ComponentGO:0035145exon-exon junction complexIEA
Cellular ComponentGO:0048471perinuclear region of cytoplasmISO
Molecular FunctionGO:0003723RNA bindingIEA
Molecular FunctionGO:0042162telomeric DNA bindingIEA
Protein AGene name AProtein BGene name BEvidence
ENSMUSP00000058375Upf2ENSMUSP00000058432Rps21predicted
ENSMUSP00000058375Upf2ENSMUSP00000058919predicted
ENSMUSP00000058375Upf2ENSMUSP00000058941predicted
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A2AT37