Results of the Job 738603265567
Parameters
HapMap
CEU
GRCh37/hg19
merlin
Autosomal recessive
0.0001
0 0 1
CEU
GRCh37/hg19
| Family ID* | Sample ID* | Father | Mother | Sex | Affect | Sequencing Status | VCF File |
|---|---|---|---|---|---|---|---|
| 2 | 101 | Male | Control | No | |||
| 2 | 102 | Female | Control | No | |||
| 2 | 201 | Female | Control | No | |||
| 2 | 202 | 101 | 102 | Male | Control | No | |
| 2 | 203 | 101 | 102 | Female | Control | No | |
| 2 | 204 | Male | Control | No | |||
| 2 | 301 | 202 | 201 | Female | Control | No | |
| 2 | 302 | 204 | 203 | Male | Control | Yes | 302.vcf.zip |
| 2 | 401 | 302 | 301 | Male | Control | Yes | 401.vcf.zip |
| 2 | 402 | 302 | 301 | Male | Patient | Yes | 402.vcf.zip |
Autosomal recessive
0.0001
0 0 1
| Sample ID | Note | Chromosome | Genotype |
| 302 | 302_Male_Control | ||
| 401 | 401_Male_Control | ||
| 402 | 402_Male_Patient |
Results
1. Relationship Inference
Relationship inference is not working! Please check your vcf files or parameters in Step1.
2. Linkage Region
2.1 Genome-wide LOD Scores 
2.2 Chromosome LOD Scores
Chr1 
Chr2 
Chr3 
Chr4 
Chr5 
Chr6 
Chr7 
Chr8 
Chr9 
Chr10 
Chr11 
Chr12 
Chr13 
Chr14 
Chr15 
Chr16 
Chr17 
Chr18 
Chr19 
Chr20 
Chr21 
Chr22
3. Candidate Variants and Genes
3.1 Candidate Variants
2.2 Chromosome LOD Scores
3. Candidate Variants and Genes
3.1 Candidate Variants
( PedMiner offers a default filtration process to prioritize the candidate variants )
Follow autosomal recessive inheritance pattern: 10806 variants Detail
Protein sequence variant: 849 variants Detail
Within linkage region: 125 variants Detail
3.2 Genes within Linkage Region
( PedMiner provides information for genes in linkage region )
There are 796 genes within linkage region Detail